Rmu_sc0007200.1_g000002
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007200.1
OG0011541
Physical Location & Seq
Forward (+)
28779 .. 31668
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007200.1_g000002.1.cds

Sequence Viewer

Length: 1134 bp
atgggggggaagggaagaacaccatgttgtgataagagccaagtgaagagaggtccctggagtccttctgaggacttgaggcttatcagcttcattcagaaacacggccatggtaactggagggctctccctaaacaagcaggtctactgcgatgtgggaaaagttgtcgtttgagatggattaactaccttcggcctgatctgaagcgaggtaacttcacaaaagaggaagaggagtccataattaagctacatgaaacttggggaaacaagtggtccaaaattgcatcccattttcctggaagaacagacaacgaaatcaagaatgtgtggaacactcatctgcggaagagattggctttgaagaaatcttgtggagatgatcaatcaaaggatttatcttccataacttcctcttcctcatcttcttctagtgcttcatttcagttgtctagaggaaaaccaagtgtaggatccaccgctgaattcgagcatcaatctaaccacgaatgcaacatgtccaaaaaccggaacgactgtgaactgcccaattcgacgacaatccaagaaaaacttgatcaaaatatactaatggaagtaacaaatcaagttagggttgatgatgctaaaggcgtgaaaacgttgaccataagttcttccttttcatctcatgactcctcaaacggctcaagttccagccaaggcggcggtatttcaaggcctgatgatttggtatttgactttgaaggagcttatgaacctcaaattgcagacaaggaagtctttgaaattccattcgagtctgaccatgatttctggaacatgttagatgagtttgtgccctttcagtcaaaccctgaacctctattacctcaggcggatcagacctaccagagctcaaacttagagctagttgaaagtggaaagtggctcagttacttggagagtgagcttggccttgaggattcaacaaagaccgagatcaacaaccaggattttgtgatgaaggatgcaactgaacaattagtgccggagaagtactgtgacaagttgccaaagcctgcagaaattgaccaggacatggatgattacttcggaatgtggccttcttggccagacaactctggcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

377

Amino Acids

42.57

Weight (kDa)

5.2

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
Acc36I ACCTGC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 1081
AccI GTMKAC 1 cut(s) 145
AciI CCGC 5 cut(s) 346, 480, 705, 708, 878
AclI AACGTT 1 cut(s) 641
AclWI GGATC 3 cut(s) 468, 481, 888
AcoI YGGCCR 2 cut(s) 106, 1112
AcsI RAATTY 2 cut(s) 485, 789
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 1040
AfiI CCNNNNNNNGG 3 cut(s) 470, 528, 1081
AflIII ACRYGT 2 cut(s) 516, 822
AgsI TTSAA 6 cut(s) 364, 717, 746, 788, 917, 969
AjnI CCWGG 4 cut(s) 56, 298, 990, 1074
AluBI AGCT 6 cut(s) 90, 250, 752, 897, 910, 952
AluI AGCT 6 cut(s) 90, 250, 752, 897, 910, 952
Alw21I GWGCWC 1 cut(s) 899
AlwI GGATC 3 cut(s) 468, 481, 888
AoxI GGCC 6 cut(s) 106, 194, 719, 955, 1103, 1112
ApoI RAATTY 2 cut(s) 485, 789
AspS9I GGNCC 2 cut(s) 53, 276
AvaII GGWCC 2 cut(s) 53, 276
AxyI CCTNAGG 1 cut(s) 873
BaeGI GKGCMC 1 cut(s) 843
BalI TGGCCA 1 cut(s) 1114
BamHI GGATCC 1 cut(s) 473
BanII GRGCYC 2 cut(s) 127, 899
Bbv12I GWGCWC 1 cut(s) 899
BccI CCATC 1 cut(s) 171
BceAI ACGGC 2 cut(s) 121, 700
BciT130I CCWGG 4 cut(s) 58, 300, 992, 1076
BclI TGATCA 2 cut(s) 382, 577
BfaI CTAG 3 cut(s) 432, 453, 911
BfmI CTRYAG 1 cut(s) 1062
BfuAI ACCTGC 1 cut(s) 131
BglI GCCNNNNNGGC 2 cut(s) 705, 1111
BisI GCNGC 1 cut(s) 706
BlsI GCNGC 1 cut(s) 707
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 4 cut(s) 58, 300, 992, 1076
Bme18I GGWCC 2 cut(s) 53, 276
BmgT120I GGNCC 2 cut(s) 53, 276
BmiI GGNNCC 2 cut(s) 55, 475
BmrFI CCNGG 4 cut(s) 58, 300, 992, 1076
BmsI GCATC 4 cut(s) 296, 502, 613, 1000
BpmI CTGGAG 2 cut(s) 79, 139
BpuEI CTTGAG 3 cut(s) 97, 673, 980
BsaJI CCNNGG 3 cut(s) 56, 109, 700
BsaWI WCCGGW 1 cut(s) 528
Bsc4I CCNNNNNNNGG 3 cut(s) 470, 528, 1081
Bse1I ACTGG 1 cut(s) 122
Bse21I CCTNAGG 1 cut(s) 873
BseBI CCWGG 4 cut(s) 58, 300, 992, 1076
BseDI CCNNGG 3 cut(s) 56, 109, 700
BseGI GGATG 3 cut(s) 287, 1015, 1090
BseLI CCNNNNNNNGG 3 cut(s) 470, 528, 1081
BseMII CTCAG 3 cut(s) 60, 887, 946
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 2 cut(s) 248, 667
BseSI GKGCMC 1 cut(s) 843
BshFI GGCC 6 cut(s) 108, 196, 721, 957, 1105, 1114
BsiHKAI GWGCWC 1 cut(s) 899
BsiSI CCGG 2 cut(s) 529, 1031
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 3 cut(s) 470, 528, 1081
BsmFI GGGAC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 515
BsnI GGCC 6 cut(s) 108, 196, 721, 957, 1105, 1114
Bsp1286I GDGCHC 3 cut(s) 127, 843, 899
Bsp143I GATC 6 cut(s) 199, 382, 473, 577, 880, 981
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 5 cut(s) 346, 480, 705, 708, 878
BspANI GGCC 6 cut(s) 108, 196, 721, 957, 1105, 1114
BspCNI CTCAG 3 cut(s) 61, 886, 945
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 55, 475
BspMAI CTGCAG 1 cut(s) 1066
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 3 cut(s) 468, 481, 888
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 56, 109, 700
BssMI GATC 6 cut(s) 199, 382, 473, 577, 880, 981
BssT1I CCWWGG 2 cut(s) 109, 700
Bst2UI CCWGG 4 cut(s) 58, 300, 992, 1076
Bst4CI ACNGT 2 cut(s) 539, 1043
Bst6I CTCTTC 4 cut(s) 41, 225, 344, 421
BstC8I GCNNGC 1 cut(s) 1062
BstDEI CTNAG 4 cut(s) 69, 873, 904, 932
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 287, 1015, 1090
BstKTI GATC 6 cut(s) 202, 385, 476, 580, 883, 984
BstMBI GATC 6 cut(s) 199, 382, 473, 577, 880, 981
BstMWI GCNNNNNNNGC 2 cut(s) 705, 1111
BstNI CCWGG 4 cut(s) 58, 300, 992, 1076
BstNSI RCATGY 2 cut(s) 520, 826
BstSCI CCNGG 4 cut(s) 56, 298, 990, 1074
BstSFI CTRYAG 1 cut(s) 1062
BstSLI GKGCMC 1 cut(s) 843
BstX2I RGATCY 1 cut(s) 473
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 473
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 6 cut(s) 108, 196, 721, 957, 1105, 1114
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 3 cut(s) 287, 1015, 1090
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 1062
CciI TCATGA 1 cut(s) 670
Cfr13I GGNCC 2 cut(s) 53, 276
Csp6I GTAC 1 cut(s) 1039
CviAII CATG 8 cut(s) 24, 110, 254, 517, 671, 809, 823, 1081
CviQI GTAC 1 cut(s) 1039
DdeI CTNAG 4 cut(s) 69, 873, 904, 932
DpnI GATC 6 cut(s) 201, 384, 475, 579, 882, 983
DpnII GATC 6 cut(s) 199, 382, 473, 577, 880, 981
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 2 cut(s) 106, 1112
Eam1104I CTCTTC 4 cut(s) 41, 225, 344, 421
EarI CTCTTC 4 cut(s) 41, 225, 344, 421
EciI GGCGGA 1 cut(s) 893
Ecl136II GAGCTC 1 cut(s) 897
Eco130I CCWWGG 2 cut(s) 109, 700
Eco147I AGGCCT 1 cut(s) 721
Eco24I GRGCYC 2 cut(s) 127, 899
Eco47I GGWCC 2 cut(s) 53, 276
Eco53kI GAGCTC 1 cut(s) 897
Eco57I CTGAAG 1 cut(s) 224
Eco81I CCTNAGG 1 cut(s) 873
EcoICRI GAGCTC 1 cut(s) 897
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 4 cut(s) 56, 298, 990, 1074
EcoT14I CCWWGG 2 cut(s) 109, 700
EcoT38I GRGCYC 2 cut(s) 127, 899
ErhI CCWWGG 2 cut(s) 109, 700
FaeI CATG 8 cut(s) 27, 113, 257, 520, 674, 812, 826, 1084
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 767, 799
FaqI GGGAC 1 cut(s) 39
FatI CATG 8 cut(s) 23, 109, 253, 516, 670, 808, 822, 1080
FbaI TGATCA 2 cut(s) 382, 577
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 706
FokI GGATG 3 cut(s) 274, 1022, 1097
FriOI GRGCYC 2 cut(s) 127, 899
Fsp4HI GCNGC 1 cut(s) 706
FspBI CTAG 3 cut(s) 432, 453, 911
GluI GCNGC 1 cut(s) 706
GsuI CTGGAG 2 cut(s) 79, 139
HaeIII GGCC 6 cut(s) 108, 196, 721, 957, 1105, 1114
HapII CCGG 2 cut(s) 529, 1031
Hin1II CATG 8 cut(s) 27, 113, 257, 520, 674, 812, 826, 1084
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HinfI GANTC 5 cut(s) 61, 236, 674, 800, 965
HpaII CCGG 2 cut(s) 529, 1031
Hpy166II GTNNAC 3 cut(s) 146, 542, 645
Hpy188I TCNGA 6 cut(s) 70, 99, 204, 805, 885, 1097
Hpy188III TCNNGA 4 cut(s) 322, 453, 671, 817
Hpy8I GTNNAC 3 cut(s) 146, 542, 645
Hpy99I CGWCG 1 cut(s) 559
HpyAV CCTTC 6 cut(s) 4, 75, 200, 740, 1000, 1116
HpyCH4III ACNGT 2 cut(s) 539, 1043
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 5 cut(s) 287, 513, 770, 1013, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 705, 1111
HpyF3I CTNAG 4 cut(s) 69, 873, 904, 932
HpySE526I ACGT 1 cut(s) 641
Hsp92II CATG 8 cut(s) 27, 113, 257, 520, 674, 812, 826, 1084
Ksp22I TGATCA 2 cut(s) 382, 577
Kzo9I GATC 6 cut(s) 199, 382, 473, 577, 880, 981
LmnI GCTCC 1 cut(s) 749
LweI GCATC 4 cut(s) 296, 502, 613, 1000
MaeI CTAG 3 cut(s) 432, 453, 911
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 5 cut(s) 113, 212, 598, 935, 1043
MalI GATC 6 cut(s) 201, 384, 475, 579, 882, 983
MboI GATC 6 cut(s) 199, 382, 473, 577, 880, 981
MflI RGATCY 1 cut(s) 473
MhlI GDGCHC 3 cut(s) 127, 843, 899
MlsI TGGCCA 1 cut(s) 1114
MluCI AATT 8 cut(s) 243, 282, 485, 550, 765, 789, 1022, 1068
MluNI TGGCCA 1 cut(s) 1114
MlyI GAGTC 4 cut(s) 70, 245, 668, 809
Mox20I TGGCCA 1 cut(s) 1114
MscI TGGCCA 1 cut(s) 1114
MseI TTAA 2 cut(s) 183, 246
MslI CAYNNNNRTG 1 cut(s) 108
Msp20I TGGCCA 1 cut(s) 1114
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 2 cut(s) 529, 1031
MspR9I CCNGG 4 cut(s) 58, 300, 992, 1076
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 4 cut(s) 58, 300, 992, 1076
MwoI GCNNNNNNNGC 2 cut(s) 705, 1111
NcoI CCATGG 1 cut(s) 109
NdeII GATC 6 cut(s) 199, 382, 473, 577, 880, 981
NlaIII CATG 8 cut(s) 27, 113, 257, 520, 674, 812, 826, 1084
NlaIV GGNNCC 2 cut(s) 55, 475
NmuCI GTSAC 1 cut(s) 1043
NspI RCATGY 2 cut(s) 520, 826
PagI TCATGA 1 cut(s) 670
PceI AGGCCT 1 cut(s) 721
PciI ACATGT 2 cut(s) 516, 822
PctI GAATGC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 965
PflMI CCANNNNNTGG 1 cut(s) 1081
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 1 cut(s) 707
PleI GAGTC 4 cut(s) 69, 244, 668, 808
PpsI GAGTC 4 cut(s) 69, 244, 668, 808
PpuMI RGGWCCY 1 cut(s) 53
PscI ACATGT 2 cut(s) 516, 822
Psp124BI GAGCTC 1 cut(s) 899
Psp1406I AACGTT 1 cut(s) 641
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 4 cut(s) 56, 298, 990, 1074
PspGI CCWGG 4 cut(s) 56, 298, 990, 1074
PspN4I GGNNCC 2 cut(s) 55, 475
PspPI GGNCC 2 cut(s) 53, 276
PspPPI RGGWCCY 1 cut(s) 53
PsrI GAACNNNNNNTAC 2 cut(s) 852, 884
PstI CTGCAG 1 cut(s) 1066
PsuI RGATCY 1 cut(s) 473
RsaI GTAC 1 cut(s) 1040
RsaNI GTAC 1 cut(s) 1039
RseI CAYNNNNRTG 1 cut(s) 108
SacI GAGCTC 1 cut(s) 899
SaqAI TTAA 2 cut(s) 183, 246
SatI GCNGC 1 cut(s) 706
Sau3AI GATC 6 cut(s) 199, 382, 473, 577, 880, 981
Sau96I GGNCC 2 cut(s) 53, 276
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 4 cut(s) 70, 245, 668, 809
ScrFI CCNGG 4 cut(s) 58, 300, 992, 1076
SduI GDGCHC 3 cut(s) 127, 843, 899
SfaNI GCATC 4 cut(s) 296, 502, 613, 1000
SfcI CTRYAG 1 cut(s) 1062
SfiI GGCCNNNNNGGCC 1 cut(s) 1111
SinI GGWCC 2 cut(s) 53, 276
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 3 cut(s) 76, 688, 959
SmoI CTYRAG 3 cut(s) 76, 688, 959
Sse9I AATT 8 cut(s) 243, 282, 485, 550, 765, 789, 1022, 1068
SseBI AGGCCT 1 cut(s) 721
SsiI CCGC 5 cut(s) 346, 480, 705, 708, 878
SspMI CTAG 3 cut(s) 432, 453, 911
SstI GAGCTC 1 cut(s) 899
StuI AGGCCT 1 cut(s) 721
StyD4I CCNGG 4 cut(s) 56, 298, 990, 1074
StyI CCWWGG 2 cut(s) 109, 700
TaaI ACNGT 2 cut(s) 539, 1043
TaiI ACGT 1 cut(s) 644
TaqI TCGA 3 cut(s) 489, 554, 798
TaqII GACCGA 1 cut(s) 992
TasI AATT 8 cut(s) 243, 282, 485, 550, 765, 789, 1022, 1068
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 1 cut(s) 708
TfiI GAWTC 1 cut(s) 965
Tru1I TTAA 2 cut(s) 183, 246
Tru9I TTAA 2 cut(s) 183, 246
TseFI GTSAC 1 cut(s) 1043
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 6 cut(s) 82, 270, 429, 654, 771, 1019
Van91I CCANNNNNTGG 1 cut(s) 1081
VpaK11BI GGWCC 2 cut(s) 53, 276
XapI RAATTY 2 cut(s) 485, 789
XbaI TCTAGA 1 cut(s) 452
XceI RCATGY 2 cut(s) 520, 826
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 3 cut(s) 432, 453, 911
ZrmI AGTACT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.