MD05G1224100.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011541
Physical Location & Seq
Forward (+)
35678670 .. 35681650
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1224100.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGGGGGGAAAGGGAAGATCGCCATGTTGTGATAAGGAGAAAGTGAAGAGGGGTCCTTGGAGCCCTGCTGAGGACTTGAGGCTCATTACTTTCATTCAGAAAAATGGCCATGATAACTGGAGGGCTCTCCCTAAGCGAGCAGGTTTGCTGAGATGTGGTAAAAGTTGCCGTTTGAGATGGATTAATTACCTTAGGCCTGATGTGAAGCGAGGGAACTTCACTATTGAGGAAGAGGAGTCCATAATCAGGCTACATGAAGCCTTGGGAAACAAGTGGTCAAAAATTGCAGCACATTTTCCGGGAAGAACGGACAATGAGATTAAGAATGTGTGGAACACTCATCTAAAGAAAAGATTGAAACGCCAAAATTTACCATCCTCTTCCTCGTCATCTTCTTCTACTACTACTACATTATTGTCTGGTGGAAAACCAAGTGTAGGAGGAGGGGAAGAACTAATTGAGCATCAATCTGCTGAAGAAACTAGCATGGCCACCCACAACAAACCTCATGAGCCATGCAGTTTGACAATTCAAGAAAACCCTAATCATCATGATTCTCCAATGGAATTAACAAATGATCCCAAGGAGTTGACAGGGTTGACCACTTCTTCTTCTAATGTTTCTTCTAATGAATCCAATGGCTCAAGTAGTTCCAGCCAAGTTGTTGGTATGTCAAGGCCAGGTGCAGAAGAGCAGCAAATGGATGATTCAAACTACTTTTCAGGAATTTTTGATTTTCCATTTGAGTCTGACTCTTATTTTTGGGACATGTTTAATGACTTTGAGCCACTCCAGTCAAATTTAGTCCAAGTACTTCATGAGGCTGATGAGGCTAATTGCCAGAGATCGGGCTTGGGACAAGTGGAAAATGGGAAGTGGCTTAGTTACTTGGAAAGTGAACTTGGACTTGAAGTAACACCAACAGAGAGTGAGAAAAATAACCAGGAGATTTTACCAAAGTATGCAACTGAACAACCAATCTTCCCAGAGGCCTTTGACAAAATGCCAAACCCTACAGAAGCTGACGAGAGCATGGATTACTTTAATTCAAACGTGGCCTTCGCCACACAACAATTCCTCCATTCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

364

Amino Acids

40.71

Weight (kDa)

5.25

Isoelectric Point (pI)

63.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 1.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 79 1.5e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 115 1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 123 8.4e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AclWI GGATC 1 cut(s) 572
AcoI YGGCCR 2 cut(s) 106, 489
AcsI RAATTY 3 cut(s) 367, 726, 799
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 1 cut(s) 813
AfiI CCNNNNNNNGG 4 cut(s) 70, 246, 437, 847
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 6 cut(s) 358, 533, 711, 911, 1050, 1086
AjnI CCWGG 2 cut(s) 679, 942
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AluBI AGCT 1 cut(s) 1022
AluI AGCT 1 cut(s) 1022
AlwI GGATC 1 cut(s) 572
AlwNI CAGNNNCTG 1 cut(s) 1022
AoxI GGCC 6 cut(s) 106, 194, 489, 677, 990, 1056
ApeKI GCWGC 2 cut(s) 287, 694
ApoI RAATTY 3 cut(s) 367, 726, 799
AseI ATTAAT 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 300
AvaII GGWCC 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 191
BalI TGGCCA 2 cut(s) 108, 491
BanII GRGCYC 2 cut(s) 65, 127
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 299, 706
BccI CCATC 2 cut(s) 171, 382
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 2 cut(s) 681, 944
BcnI CCSGG 1 cut(s) 300
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 1014
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 2 cut(s) 288, 695
BlsI GCNGC 2 cut(s) 289, 696
BmcAI AGTACT 1 cut(s) 813
Bme1390I CCNGG 3 cut(s) 300, 681, 944
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 54, 62
BmrFI CCNGG 3 cut(s) 300, 681, 944
BmsI GCATC 1 cut(s) 472
BplI GAGNNNNNCTC 2 cut(s) 737, 769
BpmI CTGGAG 2 cut(s) 139, 776
Bpu10I CCTNAGC 2 cut(s) 69, 132
BpuEI CTTGAG 2 cut(s) 97, 628
BpuMI CCSGG 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 56, 261, 582
BsaXI ACNNNNNCTCC 2 cut(s) 1062, 1092
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 246, 437, 847
Bse1I ACTGG 2 cut(s) 122, 793
Bse21I CCTNAGG 1 cut(s) 191
BseBI CCWGG 2 cut(s) 681, 944
BseDI CCNNGG 3 cut(s) 56, 261, 582
BseGI GGATG 2 cut(s) 374, 709
BseLI CCNNNNNNNGG 4 cut(s) 70, 246, 437, 847
BseMII CTCAG 2 cut(s) 60, 140
BseNI ACTGG 2 cut(s) 122, 793
BseRI GAGGAG 2 cut(s) 248, 456
BseXI GCAGC 2 cut(s) 299, 706
BsgI GTGCAG 1 cut(s) 705
BshFI GGCC 6 cut(s) 108, 196, 491, 679, 992, 1058
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 2 cut(s) 779, 870
BslI CCNNNNNNNGG 4 cut(s) 70, 246, 437, 847
BsmFI GGGAC 2 cut(s) 779, 870
BsnI GGCC 6 cut(s) 108, 196, 491, 679, 992, 1058
Bsp1286I GDGCHC 2 cut(s) 65, 127
Bsp143I GATC 3 cut(s) 17, 577, 845
BspANI GGCC 6 cut(s) 108, 196, 491, 679, 992, 1058
BspCNI CTCAG 2 cut(s) 61, 141
BspHI TCATGA 3 cut(s) 508, 550, 817
BspLI GGNNCC 2 cut(s) 54, 62
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 572
BspQI GCTCTTC 1 cut(s) 684
BsrI ACTGG 2 cut(s) 122, 793
BssECI CCNNGG 3 cut(s) 56, 261, 582
BssMI GATC 3 cut(s) 17, 577, 845
BssT1I CCWWGG 3 cut(s) 56, 261, 582
Bst2UI CCWGG 2 cut(s) 681, 944
Bst6I CTCTTC 4 cut(s) 41, 225, 385, 684
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 5 cut(s) 69, 132, 149, 191, 881
BstF5I GGATG 2 cut(s) 374, 709
BstKTI GATC 3 cut(s) 20, 580, 848
BstMBI GATC 3 cut(s) 17, 577, 845
BstMWI GCNNNNNNNGC 1 cut(s) 830
BstNI CCWGG 2 cut(s) 681, 944
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 3 cut(s) 298, 679, 942
BstSFI CTRYAG 1 cut(s) 1014
BstV1I GCAGC 2 cut(s) 299, 706
BstXI CCANNNNNNTGG 1 cut(s) 665
Bsu36I CCTNAGG 1 cut(s) 191
BsuRI GGCC 6 cut(s) 108, 196, 491, 679, 992, 1058
BtsCI GGATG 2 cut(s) 374, 709
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 138
CaiI CAGNNNCTG 1 cut(s) 1022
CciI TCATGA 3 cut(s) 508, 550, 817
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 812
CviQI GTAC 1 cut(s) 812
DdeI CTNAG 5 cut(s) 69, 132, 149, 191, 881
DpnI GATC 3 cut(s) 19, 579, 847
DpnII GATC 3 cut(s) 17, 577, 845
EaeI YGGCCR 2 cut(s) 106, 489
Eam1104I CTCTTC 4 cut(s) 41, 225, 385, 684
EarI CTCTTC 4 cut(s) 41, 225, 385, 684
Eco130I CCWWGG 3 cut(s) 56, 261, 582
Eco147I AGGCCT 2 cut(s) 196, 992
Eco24I GRGCYC 2 cut(s) 65, 127
Eco47I GGWCC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 495
Eco81I CCTNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 679, 942
EcoT14I CCWWGG 3 cut(s) 56, 261, 582
EcoT38I GRGCYC 2 cut(s) 65, 127
ErhI CCWWGG 3 cut(s) 56, 261, 582
FaqI GGGAC 2 cut(s) 779, 870
Fnu4HI GCNGC 2 cut(s) 288, 695
FokI GGATG 2 cut(s) 361, 716
FriOI GRGCYC 2 cut(s) 65, 127
Fsp4HI GCNGC 2 cut(s) 288, 695
FspBI CTAG 1 cut(s) 483
GluI GCNGC 2 cut(s) 288, 695
GsuI CTGGAG 2 cut(s) 139, 776
HaeIII GGCC 6 cut(s) 108, 196, 491, 679, 992, 1058
HapII CCGG 1 cut(s) 299
HincII GTYRAC 2 cut(s) 591, 600
HindII GTYRAC 2 cut(s) 591, 600
HinfI GANTC 6 cut(s) 236, 554, 632, 707, 746, 752
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 3 cut(s) 591, 600, 899
Hpy188I TCNGA 2 cut(s) 99, 751
Hpy188III TCNNGA 5 cut(s) 509, 533, 551, 723, 818
Hpy8I GTNNAC 3 cut(s) 591, 600, 899
HpyAV CCTTC 1 cut(s) 1069
HpyCH4IV ACGT 1 cut(s) 1053
HpyCH4V TGCA 4 cut(s) 287, 519, 686, 965
HpyF10VI GCNNNNNNNGC 1 cut(s) 830
HpyF3I CTNAG 5 cut(s) 69, 132, 149, 191, 881
HpySE526I ACGT 1 cut(s) 1053
Kzo9I GATC 3 cut(s) 17, 577, 845
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 1 cut(s) 60
Lsp1109I GCAGC 2 cut(s) 299, 706
LweI GCATC 1 cut(s) 472
MaeI CTAG 1 cut(s) 483
MaeII ACGT 1 cut(s) 1053
MaeIII GTNAC 2 cut(s) 884, 913
MalI GATC 3 cut(s) 19, 579, 847
MboI GATC 3 cut(s) 17, 577, 845
MhlI GDGCHC 2 cut(s) 65, 127
MlsI TGGCCA 2 cut(s) 108, 491
MluNI TGGCCA 2 cut(s) 108, 491
MlyI GAGTC 3 cut(s) 245, 746, 755
Mox20I TGGCCA 2 cut(s) 108, 491
MscI TGGCCA 2 cut(s) 108, 491
MseI TTAA 5 cut(s) 183, 321, 569, 774, 1044
Msp20I TGGCCA 2 cut(s) 108, 491
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 3 cut(s) 300, 681, 944
MvaI CCWGG 2 cut(s) 681, 944
MwoI GCNNNNNNNGC 1 cut(s) 830
NciI CCSGG 1 cut(s) 300
NdeII GATC 3 cut(s) 17, 577, 845
NlaIV GGNNCC 2 cut(s) 54, 62
NspI RCATGY 1 cut(s) 772
PagI TCATGA 3 cut(s) 508, 550, 817
PceI AGGCCT 2 cut(s) 196, 992
PciI ACATGT 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 684
PfeI GAWTC 3 cut(s) 554, 632, 707
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 2 cut(s) 289, 696
PleI GAGTC 3 cut(s) 244, 746, 754
PpsI GAGTC 3 cut(s) 244, 746, 754
PpuMI RGGWCCY 1 cut(s) 53
PscI ACATGT 1 cut(s) 768
PshBI ATTAAT 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 679, 942
PspGI CCWGG 2 cut(s) 679, 942
PspN4I GGNNCC 2 cut(s) 54, 62
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PstNI CAGNNNCTG 1 cut(s) 1022
RsaI GTAC 1 cut(s) 813
RsaNI GTAC 1 cut(s) 812
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 5 cut(s) 183, 321, 569, 774, 1044
SatI GCNGC 2 cut(s) 288, 695
Sau3AI GATC 3 cut(s) 17, 577, 845
Sau96I GGNCC 1 cut(s) 53
ScaI AGTACT 1 cut(s) 813
SchI GAGTC 3 cut(s) 245, 746, 755
ScrFI CCNGG 3 cut(s) 300, 681, 944
SduI GDGCHC 2 cut(s) 65, 127
SetI ASST 6 cut(s) 145, 192, 508, 685, 1024, 1056
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 1 cut(s) 1014
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 76, 643
SmoI CTYRAG 2 cut(s) 76, 643
SseBI AGGCCT 2 cut(s) 196, 992
SspMI CTAG 1 cut(s) 483
StuI AGGCCT 2 cut(s) 196, 992
StyD4I CCNGG 3 cut(s) 298, 679, 942
StyI CCWWGG 3 cut(s) 56, 261, 582
TaiI ACGT 1 cut(s) 1056
TatI WGTACW 1 cut(s) 811
TfiI GAWTC 3 cut(s) 554, 632, 707
Tru1I TTAA 5 cut(s) 183, 321, 569, 774, 1044
Tru9I TTAA 5 cut(s) 183, 321, 569, 774, 1044
TseI GCWGC 2 cut(s) 287, 694
TspDTI ATGAA 4 cut(s) 82, 270, 645, 806
TspGWI ACGGA 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 3 cut(s) 367, 726, 799
XceI RCATGY 1 cut(s) 772
XspI CTAG 1 cut(s) 483
ZrmI AGTACT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.