FvH4_3g18500

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015860
Physical Location & Seq
Forward (+)
11818639 .. 11822994
4356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18500.t1

Sequence Viewer

Length: 462 bp
ATGGCGAACAGTAACCTTCCCCGGCGGATCATCAAGGAAACTCAGCGTCTTCTTAGTGAACCCGCTCCTGGGATTAGTGCTTCACCGTCGGAAGATAACATGCGCTATTTCAATGTGATGATCCTTGGCCCCACTCAGTCTCCTTATGAAGGTGGAGTTTTCAAGTTGGAACTATTTTTACCTGAAGAATATCCAATGGCTGCTCCTAAGGTTCGGTTTCTCACTAAAATTTACCATCCTAACATAGACAAGCTGGGAAGGATATGCCTTGACATTTTGAAAGACAAGTGGAGTCCTGCTCTCCAGATACGAACTGTTCTTCTAAGTATTCAAGCACTTTTGAGTGCTCCAAATCCCGATGATCCACTCTCGGAGAACATTGCTAAGCATTGGAAATCAAATGAGGCGGAAGCTGTTGAAACAGCCAAGGAATGGACCCGTTTATATGCAAGTGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04624 map04120 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

154

Amino Acids

17.23

Weight (kDa)

6.74

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 9 - 145 6.9e-51 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78870
fragaria_vesca FvH4_3g18500
malus_domestica MD03G1241600.v1.1 MD11G1260900.v1.1
prunus_persica Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1
pyrus_communis pycom03g18840 pycom11g23030
rosa_chinensis RchiOBHm_Chr5g0031261
rosa_laevigata RLG00000033295
rosa_roxburghii Rroxscaffold_1G00049030
rosa_rugosa Rorug05G0123300
rosa_samantha Rh5CG240000
rosa_wichuraiana Rw5G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 432
AccBSI CCGCTC 1 cut(s) 65
AciI CCGC 3 cut(s) 25, 63, 407
AclWI GGATC 3 cut(s) 35, 115, 356
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 204
AfiI CCNNNNNNNGG 4 cut(s) 68, 69, 149, 432
AgsI TTSAA 5 cut(s) 112, 163, 280, 332, 419
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 253, 413
AluI AGCT 2 cut(s) 253, 413
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 3 cut(s) 35, 115, 356
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 228
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 128, 435
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 75
AvaII GGWCC 1 cut(s) 435
AxyI CCTNAGG 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 69
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 144
BisI GCNGC 1 cut(s) 201
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 22, 69
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 2 cut(s) 128, 435
BmiI GGNNCC 2 cut(s) 130, 437
BmrFI CCNGG 2 cut(s) 22, 69
BpiI GAAGAC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 1 cut(s) 287
Bpu1102I GCTNAGC 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 22
BsaJI CCNNGG 4 cut(s) 20, 68, 124, 426
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 69, 149, 432
Bse21I CCTNAGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 4 cut(s) 20, 68, 124, 426
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 4 cut(s) 68, 69, 149, 432
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 56, 149
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 253
BshFI GGCC 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 4 cut(s) 68, 69, 149, 432
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 3 cut(s) 27, 120, 361
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 3 cut(s) 25, 63, 407
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 2 cut(s) 55, 148
BspLI GGNNCC 2 cut(s) 130, 437
BspPI GGATC 3 cut(s) 35, 115, 356
BsrBI CCGCTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 378
BssECI CCNNGG 4 cut(s) 20, 68, 124, 426
BssMI GATC 3 cut(s) 27, 120, 361
BssT1I CCWWGG 2 cut(s) 124, 426
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 3 cut(s) 11, 87, 316
BstDEI CTNAG 6 cut(s) 42, 53, 135, 207, 323, 384
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 30, 123, 364
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 3 cut(s) 27, 120, 361
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 20, 67
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 41
Bsu36I CCTNAGG 1 cut(s) 207
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 235
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 128, 435
CseI GACGC 1 cut(s) 35
CviAII CATG 1 cut(s) 100
CviJI RGCY 5 cut(s) 129, 200, 253, 413, 425
CviKI_1 RGCY 5 cut(s) 129, 200, 253, 413, 425
DdeI CTNAG 6 cut(s) 42, 53, 135, 207, 323, 384
DpnI GATC 3 cut(s) 29, 122, 363
DpnII GATC 3 cut(s) 27, 120, 361
EciI GGCGGA 2 cut(s) 40, 422
Eco130I CCWWGG 2 cut(s) 124, 426
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 204
Eco81I CCTNAGG 1 cut(s) 207
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 124, 426
ErhI CCWWGG 2 cut(s) 124, 426
FaeI CATG 1 cut(s) 103
FaiI YATR 6 cut(s) 101, 147, 245, 265, 445, 447
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 201
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 22
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 292
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 91, 373
Hpy188III TCNNGA 2 cut(s) 304, 356
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 3 cut(s) 26, 143, 252
HpyCH4III ACNGT 3 cut(s) 11, 87, 316
HpyCH4V TGCA 1 cut(s) 449
HpyF3I CTNAG 6 cut(s) 42, 53, 135, 207, 323, 384
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 3 cut(s) 27, 120, 361
LmnI GCTCC 3 cut(s) 70, 208, 352
LpnPI CCDG 7 cut(s) 35, 54, 81, 195, 239, 309, 317
Lsp1109I GCAGC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 11
MalI GATC 3 cut(s) 29, 122, 363
MbiI CCGCTC 1 cut(s) 65
MboI GATC 3 cut(s) 27, 120, 361
MboII GAAGA 4 cut(s) 41, 104, 197, 311
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 1 cut(s) 228
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 2 cut(s) 69, 147
MnlI CCTC 1 cut(s) 397
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 2 cut(s) 22, 69
MvaI CCWGG 1 cut(s) 69
NciI CCSGG 1 cut(s) 22
NdeII GATC 3 cut(s) 27, 120, 361
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 2 cut(s) 130, 437
NspI RCATGY 1 cut(s) 103
PflMI CCANNNNNTGG 1 cut(s) 432
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 130, 437
PspPI GGNCC 2 cut(s) 128, 435
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 3 cut(s) 27, 120, 361
Sau96I GGNCC 2 cut(s) 128, 435
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 22, 69
SduI GDGCHC 1 cut(s) 349
SetI ASST 6 cut(s) 18, 154, 184, 213, 255, 415
SinI GGWCC 1 cut(s) 435
Sse9I AATT 1 cut(s) 228
SsiI CCGC 3 cut(s) 25, 63, 407
StyD4I CCNGG 2 cut(s) 20, 67
StyI CCWWGG 2 cut(s) 124, 426
TaaI ACNGT 3 cut(s) 11, 87, 316
TasI AATT 1 cut(s) 228
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 162
Van91I CCANNNNNTGG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 435
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 1 cut(s) 228
XceI RCATGY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.