Prupe.4G167300_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015860
Physical Location & Seq
Forward (+)
9703098 .. 9707995
4898 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G167300.1

Sequence Viewer

Length: 462 bp
ATGGCCAACAGTAACCTTCCCCGGAGAATCATCAAGGAAACTCAACGTCTCCTCAGTGAGCCTGCACCGGGAATTAGCGCTTCACCATCGGAAGACAATATGCGATATTTCAATGTGATGATCCTTGGCCCAACACAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGGTTCGATTTCTCACCAAAATTTATCATCCTAACATTGACAAGCTGGGAAGGATATGCCTTGACATTTTGAAAGACAAATGGAGTCCTGCTCTCCAGATACGAACTGTACTTTTGAGTATTCAGGCACTTTTGAGTGCTCCAAACCCCGACGATCCGCTCTCTGAGAACATCGCCAAACATTGGAAATCGAATGAGGCTGAAGCGGTTGAAACAGCAAAGGAATGGACCCGTTTATATGCAAGTGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04624 map04120 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

154

Amino Acids

17.23

Weight (kDa)

6.74

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78870
fragaria_vesca FvH4_3g18500
malus_domestica MD03G1241600.v1.1 MD11G1260900.v1.1
prunus_persica Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1
pyrus_communis pycom03g18840 pycom11g23030
rosa_chinensis RchiOBHm_Chr5g0031261
rosa_laevigata RLG00000033295
rosa_roxburghii Rroxscaffold_1G00049030
rosa_rugosa Rorug05G0123300
rosa_samantha Rh5CG240000
rosa_wichuraiana Rw5G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 390
AccBSI CCGCTC 1 cut(s) 367
AciI CCGC 2 cut(s) 365, 413
AclWI GGATC 2 cut(s) 115, 356
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 1 cut(s) 318
AfeI AGCGCT 1 cut(s) 79
AfiI CCNNNNNNNGG 3 cut(s) 68, 149, 390
AgsI TTSAA 4 cut(s) 112, 163, 280, 419
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 2 cut(s) 115, 356
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 2 cut(s) 3, 127
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 228
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 128, 435
AsuC2I CCSGG 2 cut(s) 22, 69
AsuHPI GGTGA 2 cut(s) 75, 214
AvaII GGWCC 1 cut(s) 435
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 94
BcnI CCSGG 2 cut(s) 22, 69
BcoDI GTCTC 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 81
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 22, 69
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 2 cut(s) 128, 435
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 22, 69
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 22, 69
BsaJI CCNNGG 2 cut(s) 20, 124
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 149, 390
BseDI CCNNGG 2 cut(s) 20, 124
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 3 cut(s) 68, 149, 390
BseMII CTCAG 2 cut(s) 67, 363
BseRI GAGGAG 2 cut(s) 41, 168
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 48
BshFI GGCC 2 cut(s) 5, 129
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 2 cut(s) 22, 68
BslI CCNNNNNNNGG 3 cut(s) 68, 149, 390
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsnI GGCC 2 cut(s) 5, 129
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 2 cut(s) 120, 361
BspACI CCGC 2 cut(s) 365, 413
BspANI GGCC 2 cut(s) 5, 129
BspCNI CTCAG 2 cut(s) 66, 364
BspLI GGNNCC 1 cut(s) 437
BspPI GGATC 2 cut(s) 115, 356
BsrBI CCGCTC 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 20, 124
BssMI GATC 2 cut(s) 120, 361
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 11, 316
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 53, 372
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 2 cut(s) 123, 364
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 120, 361
BstSCI CCNGG 2 cut(s) 20, 67
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 2 cut(s) 5, 129
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 128, 435
Csp6I GTAC 1 cut(s) 317
CviJI RGCY 6 cut(s) 5, 61, 129, 200, 253, 407
CviKI_1 RGCY 6 cut(s) 5, 61, 129, 200, 253, 407
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 53, 372
DpnI GATC 2 cut(s) 122, 363
DpnII GATC 2 cut(s) 120, 361
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 435
Eco47III AGCGCT 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 53
FaiI YATR 5 cut(s) 101, 147, 265, 445, 447
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 201
GlaI GCGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 2 cut(s) 5, 129
HapII CCGG 2 cut(s) 22, 68
HhaI GCGC 1 cut(s) 80
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 2 cut(s) 27, 292
HpaII CCGG 2 cut(s) 22, 68
HphI GGTGA 2 cut(s) 75, 214
Hpy188I TCNGA 2 cut(s) 91, 373
Hpy188III TCNNGA 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 3 cut(s) 26, 143, 252
HpyCH4III ACNGT 2 cut(s) 11, 316
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 65, 449
HpyF3I CTNAG 2 cut(s) 53, 372
HpySE526I ACGT 1 cut(s) 46
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 120, 361
LmnI GCTCC 2 cut(s) 208, 352
LpnPI CCDG 8 cut(s) 35, 75, 81, 195, 239, 309, 317, 317
Lsp1109I GCAGC 1 cut(s) 187
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 122, 363
MbiI CCGCTC 1 cut(s) 367
MboI GATC 2 cut(s) 120, 361
MboII GAAGA 2 cut(s) 104, 197
MhlI GDGCHC 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 72, 228
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 62, 146, 397
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 22, 68
MspR9I CCNGG 2 cut(s) 22, 69
NciI CCSGG 2 cut(s) 22, 69
NdeII GATC 2 cut(s) 120, 361
NlaIV GGNNCC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 2 cut(s) 128, 435
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 120, 361
Sau96I GGNCC 2 cut(s) 128, 435
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 22, 69
SduI GDGCHC 1 cut(s) 349
SetI ASST 4 cut(s) 18, 49, 213, 255
SinI GGWCC 1 cut(s) 435
Sse9I AATT 2 cut(s) 72, 228
SsiI CCGC 2 cut(s) 365, 413
StyD4I CCNGG 2 cut(s) 20, 67
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 11, 316
TaiI ACGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 214, 398
TasI AATT 2 cut(s) 72, 228
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 1 cut(s) 27
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 1 cut(s) 61
Van91I CCANNNNNTGG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 435
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.