MD11G1260900.v1.1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015860
Physical Location & Seq
Reverse (-)
37527294 .. 37531439
4146 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1260900.v1.1.491

Sequence Viewer

Length: 462 bp
ATGGCGAACAGTAATCTTCCCCGACGAATCATCAAGGAAACTCAACGTCTCCTTAGTGAACCTGCACCGGGAATTAGTGCTTCACCGTCAGAAGACAATATGCGATATTTCAATGTGATGATCCTTGGCCCGACACAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAACTCTTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTTCGATTTCTCACCAAAATTTATCATCCTAACATTGACAAGCTGGGAAGGATATGCCTTGATATTTTGAAAGATAAGTGGAGTCCTGCTCTCCAGATTCGAACTGTACTTTTGAGTATTCAGGCACTTTTGAGTGCCCCAAACCCCGATGATCCGCTCTCAGAGAACATCGCAAAGCATTGGAAATCGAATGAGGCTGAAGCTGTTGAAACAGCCAAGGAATGGACCCGTTTATATGCAAGCGGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04624 map04120 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

154

Amino Acids

17.23

Weight (kDa)

6.74

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 9 - 145 6.9e-51 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78870
fragaria_vesca FvH4_3g18500
malus_domestica MD03G1241600.v1.1 MD11G1260900.v1.1
prunus_persica Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1
pyrus_communis pycom03g18840 pycom11g23030
rosa_chinensis RchiOBHm_Chr5g0031261
rosa_laevigata RLG00000033295
rosa_roxburghii Rroxscaffold_1G00049030
rosa_rugosa Rorug05G0123300
rosa_samantha Rh5CG240000
rosa_wichuraiana Rw5G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccB7I CCANNNNNTGG 1 cut(s) 432
AccBSI CCGCTC 1 cut(s) 367
AciI CCGC 2 cut(s) 365, 453
AclWI GGATC 2 cut(s) 115, 356
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 2 cut(s) 204, 429
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 3 cut(s) 68, 149, 432
AgsI TTSAA 4 cut(s) 112, 163, 280, 419
AluBI AGCT 2 cut(s) 253, 413
AluI AGCT 2 cut(s) 253, 413
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 2 cut(s) 115, 356
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 128, 435
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 75, 214
AsuII TTCGAA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 2 cut(s) 128, 435
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 124, 426
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 149, 432
BseDI CCNNGG 2 cut(s) 124, 426
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 3 cut(s) 68, 149, 432
BseMII CTCAG 1 cut(s) 384
BseRI GAGGAG 1 cut(s) 168
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 48
BshFI GGCC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 68, 149, 432
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 2 cut(s) 120, 361
BspACI CCGC 2 cut(s) 365, 453
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 383
BspLI GGNNCC 1 cut(s) 437
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 2 cut(s) 115, 356
BspT104I TTCGAA 1 cut(s) 310
BsrBI CCGCTC 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 124, 426
BssMI GATC 2 cut(s) 120, 361
BssT1I CCWWGG 2 cut(s) 124, 426
Bst4CI ACNGT 3 cut(s) 11, 87, 316
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 53, 370
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 2 cut(s) 123, 364
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 120, 361
BstSCI CCNGG 1 cut(s) 67
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 235
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 451
Cfr13I GGNCC 2 cut(s) 128, 435
Csp6I GTAC 1 cut(s) 317
CviJI RGCY 6 cut(s) 129, 200, 253, 407, 413, 425
CviKI_1 RGCY 6 cut(s) 129, 200, 253, 407, 413, 425
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 53, 370
DpnI GATC 2 cut(s) 122, 363
DpnII GATC 2 cut(s) 120, 361
Eco130I CCWWGG 2 cut(s) 124, 426
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 2 cut(s) 204, 429
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 124, 426
ErhI CCWWGG 2 cut(s) 124, 426
Esp3I CGTCTC 1 cut(s) 53
FaiI YATR 5 cut(s) 101, 147, 265, 445, 447
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 68
HinfI GANTC 3 cut(s) 27, 292, 307
HpaII CCGG 1 cut(s) 68
HphI GGTGA 2 cut(s) 75, 214
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 91, 373
Hpy188III TCNNGA 1 cut(s) 304
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 143, 252
HpyCH4III ACNGT 3 cut(s) 11, 87, 316
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 65, 449
HpyF3I CTNAG 2 cut(s) 53, 370
HpySE526I ACGT 1 cut(s) 46
Kzo9I GATC 2 cut(s) 120, 361
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 7 cut(s) 75, 81, 195, 239, 309, 317, 317
Lsp1109I GCAGC 1 cut(s) 187
MaeII ACGT 1 cut(s) 46
MalI GATC 2 cut(s) 122, 363
MbiI CCGCTC 1 cut(s) 367
MboI GATC 2 cut(s) 120, 361
MboII GAAGA 3 cut(s) 8, 104, 197
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 2 cut(s) 72, 228
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 146, 397
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 69
NciI CCSGG 1 cut(s) 69
NdeII GATC 2 cut(s) 120, 361
NlaIV GGNNCC 1 cut(s) 437
NspV TTCGAA 1 cut(s) 310
PfeI GAWTC 2 cut(s) 27, 307
PflMI CCANNNNNTGG 1 cut(s) 432
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 2 cut(s) 128, 435
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 120, 361
Sau96I GGNCC 2 cut(s) 128, 435
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 349
SetI ASST 5 cut(s) 49, 64, 213, 255, 415
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 1 cut(s) 435
Sse9I AATT 2 cut(s) 72, 228
SsiI CCGC 2 cut(s) 365, 453
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 2 cut(s) 124, 426
TaaI ACNGT 3 cut(s) 11, 87, 316
TaiI ACGT 1 cut(s) 49
TaqI TCGA 3 cut(s) 214, 310, 398
TasI AATT 2 cut(s) 72, 228
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 2 cut(s) 27, 307
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 162
Van91I CCANNNNNTGG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 435
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.