pycom11g23030

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015860
Physical Location & Seq
Reverse (-)
26062052 .. 26065714
3663 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g23030.2

Sequence Viewer

Length: 570 bp
ATGGCGAACAGTAATCTTCCCCGACGAATCATCAAGGAAACTCAACGTCTCCTCAGTGAACCTGCTCCGGGAATTAGTGCTTCACCGTCAGAAGACAATATGCGATATTTCAATGTGATGATCCTTGGCCCGACACAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAACTCTTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTTCGATTTCTCACCAAAATTTATCATCCTAACATTGACAAGCTGGGAAGGATATGCCTAGATATTTTGAAAGATAAGTGGAGTCCTGCTCTCCAGATTCGAACTGTACTTTTGAGTATTCAGGCACTTTTGAGTGCCCCAAACCCCGATGATCCACTCTCAGAGAACATCGCAAAGCATTGGAAATCAAATGAGGCCGAAGCTGTTGAAACAGGTGTGTTGAAAGCTCGCTTGTCTTACCACTGGTTTCCCCCAGCTTACCTATTATTTGAATGTCAATCAACAACGTTGAAGCTAATGCATTCTTCCTTGATCCGTGCAGCCAAGGAATGGACCCGTTTATATGCAAGCGGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04624 map04120 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

190

Amino Acids

21.39

Weight (kDa)

8.83

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78870
fragaria_vesca FvH4_3g18500
malus_domestica MD03G1241600.v1.1 MD11G1260900.v1.1
prunus_persica Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1
pyrus_communis pycom03g18840 pycom11g23030
rosa_chinensis RchiOBHm_Chr5g0031261
rosa_laevigata RLG00000033295
rosa_roxburghii Rroxscaffold_1G00049030
rosa_rugosa Rorug05G0123300
rosa_samantha Rh5CG240000
rosa_wichuraiana Rw5G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccB7I CCANNNNNTGG 1 cut(s) 540
AciI CCGC 1 cut(s) 561
AclI AACGTT 1 cut(s) 497
AclWI GGATC 3 cut(s) 115, 356, 517
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 3 cut(s) 68, 149, 540
AgsI TTSAA 7 cut(s) 112, 163, 280, 419, 433, 482, 502
AluBI AGCT 5 cut(s) 253, 413, 437, 467, 505
AluI AGCT 5 cut(s) 253, 413, 437, 467, 505
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 3 cut(s) 115, 356, 517
AoxI GGCC 2 cut(s) 127, 405
ApeKI GCWGC 2 cut(s) 200, 530
ApoI RAATTY 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 128, 543
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 75, 214
AsuII TTCGAA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 543
BaeGI GKGCMC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 187, 542
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 2 cut(s) 201, 531
BlsI GCNGC 2 cut(s) 202, 532
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 543
BmgT120I GGNCC 2 cut(s) 128, 543
BmiI GGNNCC 1 cut(s) 545
BmrFI CCNGG 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 124, 534
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 149, 540
Bse1I ACTGG 1 cut(s) 458
BseDI CCNNGG 2 cut(s) 124, 534
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 3 cut(s) 68, 149, 540
BseMII CTCAG 2 cut(s) 67, 384
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 2 cut(s) 41, 168
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 2 cut(s) 187, 542
BseYI CCCAGC 2 cut(s) 253, 463
BsgI GTGCAG 1 cut(s) 549
BshFI GGCC 2 cut(s) 129, 407
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 68, 149, 540
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 2 cut(s) 129, 407
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 3 cut(s) 120, 361, 522
BspACI CCGC 1 cut(s) 561
BspANI GGCC 2 cut(s) 129, 407
BspCNI CTCAG 2 cut(s) 66, 383
BspLI GGNNCC 1 cut(s) 545
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 3 cut(s) 115, 356, 517
BspT104I TTCGAA 1 cut(s) 310
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 124, 534
BssMI GATC 3 cut(s) 120, 361, 522
BssT1I CCWWGG 2 cut(s) 124, 534
Bst4CI ACNGT 3 cut(s) 11, 87, 316
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 439, 559
BstDEI CTNAG 2 cut(s) 53, 370
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 3 cut(s) 123, 364, 525
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 3 cut(s) 120, 361, 522
BstSCI CCNGG 1 cut(s) 67
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 2 cut(s) 187, 542
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 2 cut(s) 129, 407
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 61, 451
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 439, 559
Cfr13I GGNCC 2 cut(s) 128, 543
Csp6I GTAC 1 cut(s) 317
CviJI RGCY 9 cut(s) 129, 200, 253, 407, 413, 437, 467, 505, 533
CviKI_1 RGCY 9 cut(s) 129, 200, 253, 407, 413, 437, 467, 505, 533
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 53, 370
DpnI GATC 3 cut(s) 122, 363, 524
DpnII GATC 3 cut(s) 120, 361, 522
Eco130I CCWWGG 2 cut(s) 124, 534
Eco47I GGWCC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 124, 534
EcoT22I ATGCAT 1 cut(s) 513
ErhI CCWWGG 2 cut(s) 124, 534
Esp3I CGTCTC 1 cut(s) 53
FaiI YATR 5 cut(s) 101, 147, 265, 553, 555
Fnu4HI GCNGC 2 cut(s) 201, 531
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 2 cut(s) 201, 531
FspBI CTAG 1 cut(s) 269
GluI GCNGC 2 cut(s) 201, 531
GsaI CCCAGC 2 cut(s) 257, 467
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 2 cut(s) 129, 407
HapII CCGG 1 cut(s) 68
HinfI GANTC 3 cut(s) 27, 292, 307
HpaII CCGG 1 cut(s) 68
HphI GGTGA 2 cut(s) 75, 214
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 91, 373
Hpy188III TCNNGA 1 cut(s) 304
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 143, 252
HpyCH4III ACNGT 3 cut(s) 11, 87, 316
HpyCH4IV ACGT 2 cut(s) 46, 497
HpyCH4V TGCA 3 cut(s) 511, 530, 557
HpyF3I CTNAG 2 cut(s) 53, 370
HpySE526I ACGT 2 cut(s) 46, 497
Kzo9I GATC 3 cut(s) 120, 361, 522
LmnI GCTCC 2 cut(s) 70, 208
Lsp1109I GCAGC 2 cut(s) 187, 542
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 46, 497
MalI GATC 3 cut(s) 122, 363, 524
MboI GATC 3 cut(s) 120, 361, 522
MboII GAAGA 4 cut(s) 8, 104, 197, 507
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 2 cut(s) 72, 228
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 62, 146, 397
Mph1103I ATGCAT 1 cut(s) 513
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 511
NciI CCSGG 1 cut(s) 69
NdeII GATC 3 cut(s) 120, 361, 522
NlaIV GGNNCC 1 cut(s) 545
NsiI ATGCAT 1 cut(s) 513
NspV TTCGAA 1 cut(s) 310
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 2 cut(s) 27, 307
PflMI CCANNNNNTGG 1 cut(s) 540
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 2 cut(s) 202, 532
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 497
PspFI CCCAGC 2 cut(s) 253, 463
PspN4I GGNNCC 1 cut(s) 545
PspPI GGNCC 2 cut(s) 128, 543
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SatI GCNGC 2 cut(s) 201, 531
Sau3AI GATC 3 cut(s) 120, 361, 522
Sau96I GGNCC 2 cut(s) 128, 543
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 349
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 1 cut(s) 543
Sse9I AATT 2 cut(s) 72, 228
SsiI CCGC 1 cut(s) 561
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 2 cut(s) 124, 534
TaaI ACNGT 3 cut(s) 11, 87, 316
TaiI ACGT 2 cut(s) 49, 500
TaqI TCGA 2 cut(s) 214, 310
TasI AATT 2 cut(s) 72, 228
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 2 cut(s) 27, 307
TscAI CASTG 2 cut(s) 61, 458
TseI GCWGC 2 cut(s) 200, 530
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 2 cut(s) 61, 458
Van91I CCANNNNNTGG 1 cut(s) 540
VpaK11BI GGWCC 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 1 cut(s) 228
XspI CTAG 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.