Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015860

Physical Location & Seq

Genomic Coordinates Reverse (-)

32662876 .. 32667064

Gene Structure 4189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1241600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGAACAGTAATCTTCCCCGACGAATCATCAAGGAAACTCAACGTCTGCTCAGTGAACCTGCACCGGGGATTAGTGCTTCACCGTCAGAAGAGAACATGCGATACTTCAATGTGATGATCCTTGGCCCAACACAATCTCCTTATGAAGGAGGAGTCTTCAAGTTGGAACTCTTTTTGCCTGAAGAATACCCAATGGCAGCTCCAAAGGTTCGATTTCTCACTAAAATTTATCATCCTAACATTGACAAGCTGGGAAGGATATGCCTTGATATATTGAAAGACAAGTGGAGTCCTGCTCTCCAGATCCGAACTGTACTTTTGAGTATTCAGGCACTGTTGAGTGCCCCAAACCCCGACGACCCGCTCTCAGAGAACATCGCAAAGCATTGGAAATCAAATGAGGCTGAAGCTGTTGAAACAGCCAAGGAATGGACCCGTTTATATGCAAGCGGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04624 map04120 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

154

Amino Acids

17.25

Weight (kDa)

6.74

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 145	9.1e-51	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78870
fragaria_vesca	FvH4_3g18500
malus_domestica	MD03G1241600.v1.1 MD11G1260900.v1.1
prunus_persica	Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1
pyrus_communis	pycom03g18840 pycom11g23030
rosa_chinensis	RchiOBHm_Chr5g0031261
rosa_laevigata	RLG00000033295
rosa_roxburghii	Rroxscaffold_1G00049030
rosa_rugosa	Rorug05G0123300
rosa_samantha	Rh5CG240000
rosa_wichuraiana	Rw5G019830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccB7I	CCANNNNNTGG	1 cut(s)	432
AccBSI	CCGCTC	1 cut(s)	367
AciI	CCGC	2 cut(s)	365, 453
AclWI	GGATC	2 cut(s)	115, 301
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	2 cut(s)	204, 429
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	3 cut(s)	68, 149, 432
AgsI	TTSAA	4 cut(s)	112, 163, 280, 419
AluBI	AGCT	3 cut(s)	203, 253, 413
AluI	AGCT	3 cut(s)	203, 253, 413
AlwI	GGATC	2 cut(s)	115, 301
AlwNI	CAGNNNCTG	1 cut(s)	337
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	128, 435
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	2 cut(s)	201, 454
BlsI	GCNGC	2 cut(s)	202, 455
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	128, 435
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpmI	CTGGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	68, 124, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 149, 432
BseDI	CCNNGG	3 cut(s)	68, 124, 426
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	3 cut(s)	68, 149, 432
BseMII	CTCAG	2 cut(s)	67, 384
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	68, 149, 432
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	120, 306
BspACI	CCGC	2 cut(s)	365, 453
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	66, 383
BspLI	GGNNCC	1 cut(s)	437
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	2 cut(s)	115, 301
BsrBI	CCGCTC	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	68, 124, 426
BssMI	GATC	2 cut(s)	120, 306
BssT1I	CCWWGG	2 cut(s)	124, 426
Bst4CI	ACNGT	4 cut(s)	11, 87, 316, 339
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	2 cut(s)	53, 370
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	2 cut(s)	123, 309
BstMBI	GATC	2 cut(s)	120, 306
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	61, 335
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	128, 435
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	6 cut(s)	129, 203, 253, 407, 413, 425
CviKI_1	RGCY	6 cut(s)	129, 203, 253, 407, 413, 425
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	2 cut(s)	53, 370
DpnI	GATC	2 cut(s)	122, 308
DpnII	GATC	2 cut(s)	120, 306
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	124, 426
Eco47I	GGWCC	1 cut(s)	435
Eco57I	CTGAAG	2 cut(s)	204, 429
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	124, 426
ErhI	CCWWGG	2 cut(s)	124, 426
FaeI	CATG	1 cut(s)	103
FaiI	YATR	6 cut(s)	101, 147, 265, 275, 445, 447
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	201, 454
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	201, 454
GluI	GCNGC	2 cut(s)	201, 454
GsaI	CCCAGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	3 cut(s)	27, 156, 292
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	3 cut(s)	91, 311, 373
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	1 cut(s)	59
Hpy99I	CGWCG	2 cut(s)	27, 362
HpyAV	CCTTC	2 cut(s)	143, 252
HpyCH4III	ACNGT	4 cut(s)	11, 87, 316, 339
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	65, 449
HpyF3I	CTNAG	2 cut(s)	53, 370
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	120, 306
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	7 cut(s)	75, 81, 195, 239, 309, 317, 317
Lsp1109I	GCAGC	1 cut(s)	212
MaeII	ACGT	1 cut(s)	46
MalI	GATC	2 cut(s)	122, 308
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	2 cut(s)	120, 306
MboII	GAAGA	4 cut(s)	8, 104, 151, 197
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	165, 301
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	2 cut(s)	146, 397
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	69
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	120, 306
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	432
PkrI	GCNGC	2 cut(s)	202, 455
PleI	GAGTC	2 cut(s)	164, 300
PpsI	GAGTC	2 cut(s)	164, 300
PspFI	CCCAGC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	2 cut(s)	128, 435
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PstNI	CAGNNNCTG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	306
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SatI	GCNGC	2 cut(s)	201, 454
Sau3AI	GATC	2 cut(s)	120, 306
Sau96I	GGNCC	2 cut(s)	128, 435
SchI	GAGTC	2 cut(s)	165, 301
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	6 cut(s)	49, 64, 205, 213, 255, 415
SinI	GGWCC	1 cut(s)	435
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	365, 453
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	2 cut(s)	124, 426
TaaI	ACNGT	4 cut(s)	11, 87, 316, 339
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	214
TasI	AATT	1 cut(s)	228
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	27
TscAI	CASTG	2 cut(s)	61, 342
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	2 cut(s)	61, 342
Van91I	CCANNNNNTGG	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	435
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.