FvH4_3g20220

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016289
Physical Location & Seq
Forward (+)
13278548 .. 13279815
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20220.t1

Sequence Viewer

Length: 720 bp
ATGATCTCTAACACCAGTGCTCTTTTCCATCAATCTCCTGCTCACCCCTGTACTCTTTTATCCTTCATTTTCGCCCTTGGAATCGTTGCCGTCTTGTTTTTGCTAAGCCAGGACAAGTTTACACCTTCAGGCCGTATCGCAATCTGGATAGCACTTGCCAAATTAACTCTCTGCACTGAAATTCTATTCCTCATTGCCCTCATGCATAATATTGTTGGGGTCATATGTTCTTGGCTTCCATATGGACGCCGTAATGACCGAGATATTGAATCGGCCGGGGTAAGAAGCCACATTTCAACCGGAATGGTTCACGCTGAGACATCTGATGAGGAGTCCCATCATGATCCCGATGAAGAAACATGGTCGCAAGCACCGGCGCAGAATGTTGTAACCATGTTGCATATGTTCTTGTTGGAAGTGCTTGACAGAGTTTGGGAGGAGATTGTAATAGAAGAAGAGCAAGAGCAACGGCTCCGGGCCATTCAAGCTCAAGCCATTGAGGCACTTCCGGAGCCTCTGCAGTTCTACAAAGCCGGCCTGGAAGCAACAGCAGCTGGAAGCAGCGATCGGTGTGCCATTTGCCTAGAAGATTTTGTGGATGGCGAGTCTTGTCGTGTTTTCGAGTGCAAGCACATCTTTCATGTTAATTGCATTGATCTTTGGTTAAAGAATAGTCTAACTTGTCCGATTTGTAGAAACTCTCTTGTGAAGATAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

240

Amino Acids

26.85

Weight (kDa)

5.05

Isoelectric Point (pI)

62.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 190 - 232 7.3e-14 Ring finger domain
zf-C3HC4_2 PF13923 190 - 231 4.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 191 - 218 4.1e-09 RING-like zinc finger
zf-C3HC4 PF00097 191 - 231 1.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 191 - 229 2.7e-06 RING-type zinc-finger
zf-rbx1 PF12678 195 - 232 3.2e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20220
malus_domestica MD03G1226900.v1.1 MD11G1244100.v1.1
prunus_persica Prupe.4G182600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0034041
rosa_laevigata RLG00000033519
rosa_multiflora Rmu_co8356837.1_g000001
rosa_roxburghii Rroxscaffold_1G00046200
rosa_rugosa Rorug05G0144300
rosa_samantha Rh5AG235300 Rh5BG236000 Rh5CG265900 Rh5DG242900
rosa_wichuraiana Rw5G021240 Rw5G021430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 508
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 1 cut(s) 52
AgsI TTSAA 3 cut(s) 269, 297, 485
AjnI CCWGG 2 cut(s) 108, 537
AluBI AGCT 2 cut(s) 488, 554
AluI AGCT 2 cut(s) 488, 554
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 1 cut(s) 338
AlwNI CAGNNNCTG 1 cut(s) 554
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 4 cut(s) 130, 273, 477, 535
ApeKI GCWGC 2 cut(s) 551, 561
ApoI RAATTY 1 cut(s) 180
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 477
AsuC2I CCSGG 2 cut(s) 277, 476
AsuHPI GGTGA 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 563, 573
BccI CCATC 3 cut(s) 36, 345, 593
BceAI ACGGC 4 cut(s) 74, 117, 234, 485
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 2 cut(s) 110, 539
BcnI CCSGG 2 cut(s) 277, 476
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 518
BglI GCCNNNNNGGC 1 cut(s) 500
BisI GCNGC 2 cut(s) 552, 562
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 2 cut(s) 553, 563
Bme1390I CCNGG 4 cut(s) 110, 277, 476, 539
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 2 cut(s) 473, 513
BmrFI CCNGG 4 cut(s) 110, 277, 476, 539
Bpu1102I GCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 474
BpuMI CCSGG 2 cut(s) 277, 476
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 76, 276
BsaWI WCCGGW 2 cut(s) 299, 508
Bse118I RCCGGY 2 cut(s) 373, 533
Bse1I ACTGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 192
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 2 cut(s) 110, 539
BseDI CCNNGG 2 cut(s) 76, 276
BseGI GGATG 1 cut(s) 604
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 2 cut(s) 344, 452
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 563, 573
BsgI GTGCAG 1 cut(s) 157
Bsh1285I CGRYCG 2 cut(s) 276, 568
BshFI GGCC 4 cut(s) 132, 275, 479, 537
BsiEI CGRYCG 2 cut(s) 276, 568
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 6 cut(s) 276, 300, 374, 475, 509, 534
BslFI GGGAC 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 4 cut(s) 132, 275, 479, 537
Bsp1286I GDGCHC 1 cut(s) 22
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 4 cut(s) 3, 343, 565, 655
Bsp1720I GCTNAGC 1 cut(s) 104
BspANI GGCC 4 cut(s) 132, 275, 479, 537
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 508
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 473, 513
BspMAI CTGCAG 1 cut(s) 522
BspPI GGATC 1 cut(s) 338
BspQI GCTCTTC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 2 cut(s) 373, 533
BsrI ACTGG 1 cut(s) 15
BssAI RCCGGY 2 cut(s) 373, 533
BssECI CCNNGG 2 cut(s) 76, 276
BssMI GATC 4 cut(s) 3, 343, 565, 655
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 110, 539
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 247
BstC8I GCNNGC 3 cut(s) 369, 535, 629
BstDEI CTNAG 2 cut(s) 104, 315
BstF5I GGATG 1 cut(s) 604
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 4 cut(s) 6, 346, 568, 658
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 4 cut(s) 3, 343, 565, 655
BstMCI CGRYCG 2 cut(s) 276, 568
BstMWI GCNNNNNNNGC 3 cut(s) 485, 500, 551
BstNI CCWGG 2 cut(s) 110, 539
BstSCI CCNGG 4 cut(s) 108, 275, 474, 537
BstSFI CTRYAG 1 cut(s) 518
BstV1I GCAGC 2 cut(s) 563, 573
BstZI CGGCCG 1 cut(s) 273
BsuRI GGCC 4 cut(s) 132, 275, 479, 537
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 22, 174
Cac8I GCNNGC 3 cut(s) 369, 535, 629
CaiI CAGNNNCTG 1 cut(s) 554
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 379
Cfr10I RCCGGY 2 cut(s) 373, 533
Cfr13I GGNCC 1 cut(s) 477
CseI GACGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 51
CviAII CATG 5 cut(s) 202, 341, 360, 394, 641
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 2 cut(s) 104, 315
DpnI GATC 4 cut(s) 5, 345, 567, 657
DpnII GATC 4 cut(s) 3, 343, 565, 655
EaeI YGGCCR 1 cut(s) 273
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 108, 537
EcoT14I CCWWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 5 cut(s) 205, 344, 363, 397, 644
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FaqI GGGAC 1 cut(s) 319
FatI CATG 5 cut(s) 201, 340, 359, 393, 640
FauNDI CATATG 3 cut(s) 224, 241, 402
Fnu4HI GCNGC 2 cut(s) 552, 562
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 2 cut(s) 552, 562
FspBI CTAG 1 cut(s) 584
GlaI GCGC 1 cut(s) 378
GluI GCNGC 2 cut(s) 552, 562
HaeIII GGCC 4 cut(s) 132, 275, 479, 537
HapII CCGG 6 cut(s) 276, 300, 374, 475, 509, 534
HgaI GACGC 1 cut(s) 255
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 5 cut(s) 205, 344, 363, 397, 644
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HinfI GANTC 4 cut(s) 81, 269, 332, 605
HpaII CCGG 6 cut(s) 276, 300, 374, 475, 509, 534
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 120, 310
Hpy188I TCNGA 2 cut(s) 325, 687
Hpy188III TCNNGA 4 cut(s) 145, 341, 347, 509
Hpy8I GTNNAC 2 cut(s) 120, 310
HpyAV CCTTC 2 cut(s) 73, 135
HpyCH4V TGCA 6 cut(s) 174, 205, 400, 520, 627, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 500, 551
HpyF3I CTNAG 2 cut(s) 104, 315
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 5 cut(s) 205, 344, 363, 397, 644
HspAI GCGC 1 cut(s) 377
Kpn2I TCCGGA 1 cut(s) 508
KroI GCCGGC 1 cut(s) 533
KroNI GCCGGC 1 cut(s) 535
Kzo9I GATC 4 cut(s) 3, 343, 565, 655
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 477, 511
Lsp1109I GCAGC 2 cut(s) 563, 573
MaeI CTAG 1 cut(s) 584
MaeIII GTNAC 1 cut(s) 388
MalI GATC 4 cut(s) 5, 345, 567, 657
MboI GATC 4 cut(s) 3, 343, 565, 655
MboII GAAGA 4 cut(s) 365, 464, 467, 599
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 3 cut(s) 161, 180, 646
MlyI GAGTC 2 cut(s) 341, 614
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 6 cut(s) 200, 209, 322, 430, 493, 525
Mph1103I ATGCAT 1 cut(s) 207
MroI TCCGGA 1 cut(s) 508
MroNI GCCGGC 1 cut(s) 533
MseI TTAA 3 cut(s) 164, 645, 665
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 6 cut(s) 276, 300, 374, 475, 509, 534
MspR9I CCNGG 4 cut(s) 110, 277, 476, 539
MvaI CCWGG 2 cut(s) 110, 539
MwoI GCNNNNNNNGC 3 cut(s) 485, 500, 551
NaeI GCCGGC 1 cut(s) 535
NciI CCSGG 2 cut(s) 277, 476
NdeI CATATG 3 cut(s) 224, 241, 402
NdeII GATC 4 cut(s) 3, 343, 565, 655
NgoMIV GCCGGC 1 cut(s) 533
NlaIII CATG 5 cut(s) 205, 344, 363, 397, 644
NlaIV GGNNCC 2 cut(s) 473, 513
NsiI ATGCAT 1 cut(s) 207
PagI TCATGA 1 cut(s) 340
PciSI GCTCTTC 1 cut(s) 450
PdiI GCCGGC 1 cut(s) 535
PfeI GAWTC 2 cut(s) 81, 269
PkrI GCNGC 2 cut(s) 553, 563
Ple19I CGATCG 1 cut(s) 568
PleI GAGTC 2 cut(s) 340, 613
PpsI GAGTC 2 cut(s) 340, 613
Psp6I CCWGG 2 cut(s) 108, 537
PspGI CCWGG 2 cut(s) 108, 537
PspN4I GGNNCC 2 cut(s) 473, 513
PspPI GGNCC 1 cut(s) 477
PstI CTGCAG 1 cut(s) 522
PstNI CAGNNNCTG 1 cut(s) 554
PvuI CGATCG 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 3 cut(s) 164, 645, 665
SatI GCNGC 2 cut(s) 552, 562
Sau3AI GATC 4 cut(s) 3, 343, 565, 655
Sau96I GGNCC 1 cut(s) 477
SchI GAGTC 2 cut(s) 341, 614
ScrFI CCNGG 4 cut(s) 110, 277, 476, 539
SduI GDGCHC 1 cut(s) 22
SetI ASST 3 cut(s) 127, 490, 556
SfcI CTRYAG 1 cut(s) 518
SgrAI CRCCGGYG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
Sse9I AATT 3 cut(s) 161, 180, 646
SspI AATATT 1 cut(s) 211
SspMI CTAG 1 cut(s) 584
StyD4I CCNGG 4 cut(s) 108, 275, 474, 537
StyI CCWWGG 1 cut(s) 76
TaqI TCGA 1 cut(s) 621
TaqII GACCGA 1 cut(s) 273
TasI AATT 3 cut(s) 161, 180, 646
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 2 cut(s) 81, 269
Tru1I TTAA 3 cut(s) 164, 645, 665
Tru9I TTAA 3 cut(s) 164, 645, 665
TscAI CASTG 2 cut(s) 22, 181
TseI GCWGC 2 cut(s) 551, 561
TspDTI ATGAA 3 cut(s) 55, 366, 629
TspRI CASTG 2 cut(s) 22, 181
XapI RAATTY 1 cut(s) 180
XspI CTAG 1 cut(s) 584
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.