Rw5G021240

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016289
Physical Location & Seq
Forward (+)
28388965 .. 28389684
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021240.1

Sequence Viewer

Length: 720 bp
ATGAGCAGCATGATCTCTAACCCAAGTGCTCTTTTCCATCAATCTCCTGCTCACCCCTGCACTCTTTTATCTTTCATTTTCGCCCTTGGAATCGTCGCCATCTTGTTTTTACTAAGCCAGGACAAGTTTACACCTTCAGGCCGTCTCGCAATCTGGATAGCACTTGCCAAATTAACTCTCTGCACCGAAATTCTATTTCTCATCGCGCTCATGCATCACATTAGTGGAGTCATATGTTCTTGGCTTCCATATGGACGCCGTAATGACCGAGATATTGAATCAGCCGGGGTAAGAAGCCACATTCTAACTGGAATTGTTCATGTTGAGCCATCTGATTTCCATCACGATCCCGATGAAGAAACATGGTCGCAACCACCGGTGCAAAATGTTGTAACTATGTTTCAAATGTTCTTGATGGAAGTGCTTGACAGAGTTTGGGAGGACATGGTAATAGAGGAAGGGCAACAGCAAAGCTTCCAGGCCATTCAAACTCAAGCCATTGAGGCACTTCCGGGGCCTCTGCAATACTGCAAAGCTAGCCTGGAAATATCGAGCTGCTGCAGCGATCGGTGTGCCATTTGCTTAGAAGATTTCGTGGCTGGCGAGTCTTGTCGTGTTTTCGAGTGCAAACACATCTTTCATGCTAATTGCATTGATAATTGGTTAAAGAATGGTCTAACTTGCCCGATTTGTAGAAACTCTCTTGTGAAGATAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

239

Amino Acids

26.85

Weight (kDa)

5.5

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 190 - 232 3.3e-14 Ring finger domain
zf-C3HC4_2 PF13923 190 - 231 6e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 191 - 218 8.8e-09 RING-like zinc finger
zf-C3HC4 PF00097 191 - 231 1.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 191 - 229 1.8e-06 RING-type zinc-finger
zf-rbx1 PF12678 192 - 232 6e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20220
malus_domestica MD03G1226900.v1.1 MD11G1244100.v1.1
prunus_persica Prupe.4G182600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0034041
rosa_laevigata RLG00000033519
rosa_multiflora Rmu_co8356837.1_g000001
rosa_roxburghii Rroxscaffold_1G00046200
rosa_rugosa Rorug05G0144300
rosa_samantha Rh5AG235300 Rh5BG236000 Rh5CG265900 Rh5DG242900
rosa_wichuraiana Rw5G021240 Rw5G021430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 206
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 256
AgeI ACCGGT 1 cut(s) 376
AgsI TTSAA 3 cut(s) 278, 404, 488
AjnI CCWGG 3 cut(s) 117, 477, 540
AleI CACNNNNGTG 1 cut(s) 222
AluBI AGCT 3 cut(s) 474, 536, 555
AluI AGCT 3 cut(s) 474, 536, 555
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 341
AoxI GGCC 3 cut(s) 139, 480, 515
ApeKI GCWGC 4 cut(s) 6, 555, 558, 561
ApoI RAATTY 1 cut(s) 189
AsiGI ACCGGT 1 cut(s) 376
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 515
AsuC2I CCSGG 2 cut(s) 286, 513
AsuHPI GGTGA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 4 cut(s) 18, 542, 545, 573
BccI CCATC 5 cut(s) 45, 107, 337, 348, 409
BceAI ACGGC 2 cut(s) 126, 243
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 3 cut(s) 119, 479, 542
BcnI CCSGG 2 cut(s) 286, 513
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 559
BglI GCCNNNNNGGC 1 cut(s) 503
BisI GCNGC 4 cut(s) 7, 556, 559, 562
BlsI GCNGC 4 cut(s) 8, 557, 560, 563
Bme1390I CCNGG 5 cut(s) 119, 286, 479, 513, 542
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 5 cut(s) 119, 286, 479, 513, 542
BmsI GCATC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 477
BpuMI CCSGG 2 cut(s) 286, 513
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 256
BsaJI CCNNGG 3 cut(s) 85, 285, 512
BsaWI WCCGGW 1 cut(s) 376
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 3 cut(s) 119, 479, 542
BseDI CCNNGG 3 cut(s) 85, 285, 512
BseJI GATNNNNATC 1 cut(s) 339
BseNI ACTGG 1 cut(s) 313
BseXI GCAGC 4 cut(s) 18, 542, 545, 573
BsgI GTGCAG 2 cut(s) 43, 166
Bsh1236I CGCG 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 568
BshFI GGCC 3 cut(s) 141, 482, 517
BshTI ACCGGT 1 cut(s) 376
BsiEI CGRYCG 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 3 cut(s) 285, 377, 512
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsnI GGCC 3 cut(s) 141, 482, 517
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 12, 346, 565
BspANI GGCC 3 cut(s) 141, 482, 517
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 516
BspMAI CTGCAG 1 cut(s) 563
BspOI GCTAGC 1 cut(s) 540
BspPI GGATC 1 cut(s) 341
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 3 cut(s) 85, 285, 512
BssMI GATC 3 cut(s) 12, 346, 565
BssNI GRCGYC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 3 cut(s) 119, 479, 542
BstACI GRCGYC 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 538, 601
BstDEI CTNAG 2 cut(s) 113, 583
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 15, 349, 568
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 12, 346, 565
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 3 cut(s) 503, 537, 561
BstNI CCWGG 3 cut(s) 119, 479, 542
BstSCI CCNGG 5 cut(s) 117, 284, 477, 511, 540
BstSFI CTRYAG 1 cut(s) 559
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 4 cut(s) 18, 542, 545, 573
BsuRI GGCC 3 cut(s) 141, 482, 517
BtgZI GCGATG 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 538, 601
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 515
CseI GACGC 1 cut(s) 264
CspAI ACCGGT 1 cut(s) 376
CviAII CATG 6 cut(s) 10, 211, 320, 363, 445, 641
DdeI CTNAG 2 cut(s) 113, 583
DpnI GATC 3 cut(s) 14, 348, 567
DpnII GATC 3 cut(s) 12, 346, 565
Eco130I CCWWGG 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 3 cut(s) 117, 477, 540
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 6 cut(s) 13, 214, 323, 366, 448, 644
FatI CATG 6 cut(s) 9, 210, 319, 362, 444, 640
FauNDI CATATG 2 cut(s) 233, 250
Fnu4HI GCNGC 4 cut(s) 7, 556, 559, 562
Fsp4HI GCNGC 4 cut(s) 7, 556, 559, 562
FspBI CTAG 1 cut(s) 537
GlaI GCGC 1 cut(s) 207
GluI GCNGC 4 cut(s) 7, 556, 559, 562
HaeIII GGCC 3 cut(s) 141, 482, 517
HapII CCGG 3 cut(s) 285, 377, 512
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 6 cut(s) 13, 214, 323, 366, 448, 644
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 4 cut(s) 90, 228, 278, 605
HpaII CCGG 3 cut(s) 285, 377, 512
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 4 cut(s) 154, 344, 350, 412
Hpy8I GTNNAC 1 cut(s) 129
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 144, 452
HpyCH4V TGCA 9 cut(s) 60, 183, 214, 382, 523, 531, 561, 627, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 503, 537, 561
HpyF3I CTNAG 2 cut(s) 113, 583
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 6 cut(s) 13, 214, 323, 366, 448, 644
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 3 cut(s) 12, 346, 565
Lsp1109I GCAGC 4 cut(s) 18, 542, 545, 573
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 1 cut(s) 391
MalI GATC 3 cut(s) 14, 348, 567
MboI GATC 3 cut(s) 12, 346, 565
MboII GAAGA 2 cut(s) 368, 599
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 5 cut(s) 170, 189, 312, 646, 658
MlyI GAGTC 2 cut(s) 237, 614
MnlI CCTC 4 cut(s) 433, 448, 496, 528
Mph1103I ATGCAT 1 cut(s) 216
MseI TTAA 2 cut(s) 173, 665
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 3 cut(s) 285, 377, 512
MspR9I CCNGG 5 cut(s) 119, 286, 479, 513, 542
MvaI CCWGG 3 cut(s) 119, 479, 542
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 503, 537, 561
NciI CCSGG 2 cut(s) 286, 513
NdeI CATATG 2 cut(s) 233, 250
NdeII GATC 3 cut(s) 12, 346, 565
NheI GCTAGC 1 cut(s) 536
NlaIII CATG 6 cut(s) 13, 214, 323, 366, 448, 644
NlaIV GGNNCC 1 cut(s) 516
NsiI ATGCAT 1 cut(s) 216
OliI CACNNNNGTG 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PfeI GAWTC 2 cut(s) 90, 278
PinAI ACCGGT 1 cut(s) 376
PkrI GCNGC 4 cut(s) 8, 557, 560, 563
Ple19I CGATCG 1 cut(s) 568
PleI GAGTC 2 cut(s) 236, 613
PpsI GAGTC 2 cut(s) 236, 613
Psp6I CCWGG 3 cut(s) 117, 477, 540
PspGI CCWGG 3 cut(s) 117, 477, 540
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 1 cut(s) 515
PstI CTGCAG 1 cut(s) 563
PvuI CGATCG 1 cut(s) 568
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 173, 665
SatI GCNGC 4 cut(s) 7, 556, 559, 562
Sau3AI GATC 3 cut(s) 12, 346, 565
Sau96I GGNCC 1 cut(s) 515
SchI GAGTC 2 cut(s) 237, 614
ScrFI CCNGG 5 cut(s) 119, 286, 479, 513, 542
SduI GDGCHC 1 cut(s) 31
SetI ASST 4 cut(s) 136, 476, 538, 557
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 559
SgrAI CRCCGGYG 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 492
SmoI CTYRAG 1 cut(s) 492
Sse9I AATT 5 cut(s) 170, 189, 312, 646, 658
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 5 cut(s) 117, 284, 477, 511, 540
StyI CCWWGG 1 cut(s) 85
TaqI TCGA 2 cut(s) 551, 621
TaqII GACCGA 1 cut(s) 282
TasI AATT 5 cut(s) 170, 189, 312, 646, 658
TfiI GAWTC 2 cut(s) 90, 278
Tru1I TTAA 2 cut(s) 173, 665
Tru9I TTAA 2 cut(s) 173, 665
TseI GCWGC 4 cut(s) 6, 555, 558, 561
TspDTI ATGAA 4 cut(s) 64, 308, 369, 629
XapI RAATTY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XspI CTAG 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.