Rorug05G0144300

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
13374566 .. 13380822
6257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0144300.1

Sequence Viewer

Length: 828 bp
ATGGCAGTGTCCAGAAAGACAGTAATGACAATTAAATCTTACCAAAATCAGGCTGAAACGCTGGTTAAAAGCTACTTACTAGCGGATCCGTTTATGCCATATACTTCCGTTCTTGGAGGAATATTTTTGTGCAAAATGGTGTATGATCTTACCCAGTTAATTAGTACCTTTTACATCAAGAGTTATGCTAGTCTTACAAAAATCCAACGAATTGAGTGGAACAGTCGAGGAATCTCTAGCATCCATGCCATTTTTATCACAGTTCTATCCTTGTACCTTGTTTTCTGGTCCGATCTCTTTTCAGACCAACAGCTTGCTGGCCTTGTTACATTTCGAAGCTCACCATTGTCTGTTTTTGGATTAGGGGTTTCTGTTGGGTACTTCTGTGCGGATCTAGGAATGCTACTGTGGCTATACCCTTCTTTAGGTGGAATGGAGTATGTCCTCCATCACTCACTTTCTGGAATTGCAGTAGCATACTCAATGTTTTCTGGGGAAGGGCAACTTTATACATACATGATCCTCATCTCTGAGATCACTACTCCAGAGATCAATATGAGATGGTATCTTGATACAGCTGGTATGAAGAGGTCCAGCGCATATCTCATTAACGGCATTGTGATATTTTTTTCATGGCTGGGGGCAAGAATTCTGCTGTTCGGGTACATGTTTTACCATGTTTACTTGCACTATGATCAGGTCATCCAGATGCACCCCTTTGGATATCTGTTGGTCTTTGCTGTACCAGCAGTGCTAGCAATAATGAACTTGATGTGGTTTGGAAAGATTATCAAGGGGTTGATGAAGCAATTAGCGAAGACGCAATGA

Protein Analysis

275

Amino Acids

31.27

Weight (kDa)

9.03

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 72 - 265 8.1e-31 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 83, 389
AclWI GGATC 4 cut(s) 80, 93, 399, 514
AcsI RAATTY 1 cut(s) 648
AfaI GTAC 5 cut(s) 166, 275, 380, 665, 744
AfiI CCNNNNNNNGG 2 cut(s) 49, 425
AflIII ACRYGT 1 cut(s) 666
AluBI AGCT 4 cut(s) 72, 313, 339, 578
AluI AGCT 4 cut(s) 72, 313, 339, 578
AlwI GGATC 4 cut(s) 80, 93, 399, 514
AoxI GGCC 1 cut(s) 319
ApoI RAATTY 1 cut(s) 648
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 2 cut(s) 288, 591
AsuHPI GGTGA 1 cut(s) 333
AsuII TTCGAA 1 cut(s) 334
AsuNHI GCTAGC 1 cut(s) 754
AvaII GGWCC 2 cut(s) 288, 591
BaeI ACNNNNGTAYC 2 cut(s) 370, 403
BamHI GGATCC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 824
BccI CCATC 2 cut(s) 456, 555
BceAI ACGGC 1 cut(s) 628
BclI TGATCA 1 cut(s) 694
BfaI CTAG 5 cut(s) 80, 189, 237, 395, 755
Bme18I GGWCC 2 cut(s) 288, 591
BmgT120I GGNCC 2 cut(s) 288, 591
BmiI GGNNCC 1 cut(s) 87
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 249, 699
BmtI GCTAGC 1 cut(s) 758
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 824
BpmI CTGGAG 1 cut(s) 528
Bpu14I TTCGAA 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 524
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 425
Bse1I ACTGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 524
BseGI GGATG 2 cut(s) 240, 702
BseJI GATNNNNATC 1 cut(s) 524
BseLI CCNNNNNNNGG 2 cut(s) 49, 425
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 637
BshFI GGCC 1 cut(s) 321
BslI CCNNNNNNNGG 2 cut(s) 49, 425
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 334
Bsp143I GATC 8 cut(s) 85, 145, 292, 391, 519, 534, 549, 694
BspACI CCGC 2 cut(s) 83, 389
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 1 cut(s) 87
BspOI GCTAGC 1 cut(s) 758
BspPI GGATC 4 cut(s) 80, 93, 399, 514
BspT104I TTCGAA 1 cut(s) 334
BsrI ACTGG 1 cut(s) 154
BssMI GATC 8 cut(s) 85, 145, 292, 391, 519, 534, 549, 694
Bst4CI ACNGT 4 cut(s) 22, 224, 262, 408
Bst6I CTCTTC 1 cut(s) 581
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 3 cut(s) 315, 319, 756
BstDEI CTNAG 1 cut(s) 531
BstENI CCTNNNNNAGG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 240, 702
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 8 cut(s) 88, 148, 295, 394, 522, 537, 552, 697
BstMBI GATC 8 cut(s) 85, 145, 292, 391, 519, 534, 549, 694
BstMWI GCNNNNNNNGC 3 cut(s) 409, 746, 755
BstNSI RCATGY 1 cut(s) 670
BstV2I GAAGAC 1 cut(s) 824
BstX2I RGATCY 2 cut(s) 85, 391
BstYI RGATCY 2 cut(s) 85, 391
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 2 cut(s) 240, 702
BtsI GCAGTG 2 cut(s) 12, 756
BtsIMutI CAGTG 2 cut(s) 12, 756
Cac8I GCNNGC 3 cut(s) 315, 319, 756
CfoI GCGC 1 cut(s) 599
Cfr13I GGNCC 2 cut(s) 288, 591
Csp6I GTAC 5 cut(s) 165, 274, 379, 664, 743
CviAII CATG 5 cut(s) 245, 517, 633, 667, 677
CviJI RGCY 8 cut(s) 53, 72, 313, 321, 339, 412, 578, 637
CviKI_1 RGCY 8 cut(s) 53, 72, 313, 321, 339, 412, 578, 637
CviQI GTAC 5 cut(s) 165, 274, 379, 664, 743
DdeI CTNAG 1 cut(s) 531
DpnI GATC 8 cut(s) 87, 147, 294, 393, 521, 536, 551, 696
DpnII GATC 8 cut(s) 85, 145, 292, 391, 519, 534, 549, 694
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
Eco32I GATATC 1 cut(s) 725
Eco47I GGWCC 2 cut(s) 288, 591
EcoNI CCTNNNNNAGG 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 648
EcoRV GATATC 1 cut(s) 725
FaeI CATG 5 cut(s) 248, 520, 636, 670, 680
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FatI CATG 5 cut(s) 244, 516, 632, 666, 676
FbaI TGATCA 1 cut(s) 694
FokI GGATG 2 cut(s) 227, 689
FspBI CTAG 5 cut(s) 80, 189, 237, 395, 755
GlaI GCGC 1 cut(s) 598
GsaI CCCAGC 1 cut(s) 641
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 1 cut(s) 321
HhaI GCGC 1 cut(s) 599
Hin1II CATG 5 cut(s) 248, 520, 636, 670, 680
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HinfI GANTC 1 cut(s) 231
HphI GGTGA 1 cut(s) 333
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 3 cut(s) 292, 304, 532
Hpy188III TCNNGA 6 cut(s) 12, 178, 462, 545, 569, 706
Hpy8I GTNNAC 1 cut(s) 682
HpyAV CCTTC 2 cut(s) 429, 491
HpyCH4III ACNGT 4 cut(s) 22, 224, 262, 408
HpyCH4V TGCA 4 cut(s) 132, 470, 688, 712
HpyF10VI GCNNNNNNNGC 3 cut(s) 409, 746, 755
HpyF3I CTNAG 1 cut(s) 531
Hsp92II CATG 5 cut(s) 248, 520, 636, 670, 680
HspAI GCGC 1 cut(s) 597
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 8 cut(s) 85, 145, 292, 391, 519, 534, 549, 694
LweI GCATC 2 cut(s) 249, 699
MaeI CTAG 5 cut(s) 80, 189, 237, 395, 755
MaeIII GTNAC 1 cut(s) 325
MalI GATC 8 cut(s) 87, 147, 294, 393, 521, 536, 551, 696
MboI GATC 8 cut(s) 85, 145, 292, 391, 519, 534, 549, 694
MboII GAAGA 1 cut(s) 598
MflI RGATCY 2 cut(s) 85, 391
MluCI AATT 6 cut(s) 30, 159, 210, 465, 648, 809
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 5 cut(s) 110, 221, 455, 533, 582
MseI TTAA 4 cut(s) 33, 66, 158, 609
MslI CAYNNNNRTG 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 578
Mva1269I GAATGC 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 409, 746, 755
NdeII GATC 8 cut(s) 85, 145, 292, 391, 519, 534, 549, 694
NheI GCTAGC 1 cut(s) 754
NlaIII CATG 5 cut(s) 248, 520, 636, 670, 680
NlaIV GGNNCC 1 cut(s) 87
NspI RCATGY 1 cut(s) 670
NspV TTCGAA 1 cut(s) 334
PciI ACATGT 1 cut(s) 666
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 231
PscI ACATGT 1 cut(s) 666
PspFI CCCAGC 1 cut(s) 637
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 2 cut(s) 288, 591
PsuI RGATCY 2 cut(s) 85, 391
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 5 cut(s) 166, 275, 380, 665, 744
RsaNI GTAC 5 cut(s) 165, 274, 379, 664, 743
RseI CAYNNNNRTG 1 cut(s) 707
SaqAI TTAA 4 cut(s) 33, 66, 158, 609
Sau3AI GATC 8 cut(s) 85, 145, 292, 391, 519, 534, 549, 694
Sau96I GGNCC 2 cut(s) 288, 591
SetI ASST 9 cut(s) 74, 170, 279, 315, 341, 430, 580, 593, 702
SfaNI GCATC 2 cut(s) 249, 699
SfuI TTCGAA 1 cut(s) 334
SinI GGWCC 2 cut(s) 288, 591
SmiMI CAYNNNNRTG 1 cut(s) 707
Sse9I AATT 6 cut(s) 30, 159, 210, 465, 648, 809
SsiI CCGC 2 cut(s) 83, 389
SspI AATATT 1 cut(s) 123
SspMI CTAG 5 cut(s) 80, 189, 237, 395, 755
TaaI ACNGT 4 cut(s) 22, 224, 262, 408
TaqI TCGA 2 cut(s) 226, 334
TasI AATT 6 cut(s) 30, 159, 210, 465, 648, 809
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 4 cut(s) 33, 66, 158, 609
Tru9I TTAA 4 cut(s) 33, 66, 158, 609
TscAI CASTG 2 cut(s) 12, 756
TspDTI ATGAA 4 cut(s) 599, 621, 779, 818
TspGWI ACGGA 2 cut(s) 78, 97
TspRI CASTG 2 cut(s) 12, 756
VpaK11BI GGWCC 2 cut(s) 288, 591
XagI CCTNNNNNAGG 1 cut(s) 423
XapI RAATTY 1 cut(s) 648
XceI RCATGY 1 cut(s) 670
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XspI CTAG 5 cut(s) 80, 189, 237, 395, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.