Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

42679031 .. 42682886

Gene Structure 3856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1294300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGAACAACTCTGAATTGTATAAAACTGCACGACTGTCTCCTCTTTCTCTCACATATTATGCTCGTTGCTTAGCAAATGGAAATTACACTGTGAAACTGCACTTTGCGGAAATAGTTATCAGAGACAACAGGTCTTATTATGGTGTTGGAAGACGAATTTTTAACGTTTATATCCAGGATAAACTGGTTTTGGAGGATTTTGATATTGAAAAGGAAGCACAAGGGGTTGATAAGGAAGTGATTAAGGTATTTAAAGCAGTAGTTAACGTTAAGACTTTAGAAATCCGCTTTCAGTGGGCTGGGAAAGGGACAACAAATGTTCCAAAATCAGGAACATATGGTTCTCTGATATCAGCTATCTCAGTGCAGTCTGATTTCAAACCACCTGATGATAGCAAATGGAAGAAATTCATTGTGATTGGAGTTGTTTCGGCGTTATTCCTTGTTTTCGTAATTTTGGGCATTCTTTGGTTGAAAGGCTGTTTCGGAGGCAGGACAACCAGGGAACAAGATCTCATGGGATTTGATCTTCAAACTGGTTTCTTTAAATTCAAGCAACTTAAAGCTGCAACTAACAACTTCGATGCTGCAAACAAGCTTGGGGAAGGTGGCTTTGGAGCTGTTTACAAGGGCGAACTATTAGATGGCACATTTATTGCAGTTAAGCAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAAATAGGCATGATTTCTGCCTTACAACACCCAAATCTTGTGAAATTGTATGGATGCTGCATCGAAGGAAATCAGTTATTTTTGGTATACGAATATATGGAGAACAATAGCCTTTCCCATGTTTTGTTTGGCCCAGAGGAAGGCCTAAAGAAACTGAACTGGAATACGAGGTATAAAATATGTCTTGGCATTGCAAGAGGTCTAGCTTTCCTGCATGAGGAGTCGACACTGAAAATTGTTCATAGAGACATCAAAACAACCAATATACTGCTTGACCGAGACCTTAACCCTAAGATATCCGACTTTGGTTTGGCTAAGCTGGACGAAGAGGAGAAGACCCATATTAGCACCAGAGTCGCTGGAACTATAGGATACATGGCACCAGAATATGCATTATGGGGTTATTTGAGTGACAAAGCAGATGTTTACAGTTTTGGGGTCGTTGCATTGGAACTCATATCTGGAAAAAACAACGTCAAATATCGTCCAAATGAGAATTTTGTATGCCTTCTTGATTGGGCCCTTGTTTTGCAACAAAAAGGAAATCTGATGGAGCTGGTGGATCGAAAGTTGGGGTCTGAGTTCAATAAGGAAGAGGCATTGAGAATGATAAAGGTAGCTCTACTATGTGCCAATTCATCACCGGCACTAAGACCTACAATGTCTGCAGTAGTGAGCATGCTTGAAGGCCAAACTCTTGTTCACGAGGTGAAGATAAACCCGAGTATTTATGGTGACGAGTTGAGGTTTAGGGCCTTCACCGAGGACTTTGATACTACTTCTGTACAGAGCACGCAAAGCTTACTGTATTCACCCAATGCAAAACGGACCGCCTATACCTCATTGTCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

522

Amino Acids

58.49

Weight (kDa)

8.67

Isoelectric Point (pI)

30.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	3 - 120	1.7e-32	Malectin domain
Pkinase	PF00069	196 - 462	6.1e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	197 - 465	2.2e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1090
AccI	GTMKAC	2 cut(s)	798, 935
AciI	CCGC	3 cut(s)	107, 286, 1542
AclI	AACGTT	2 cut(s)	165, 267
AclWI	GGATC	1 cut(s)	1281
AcsI	RAATTY	5 cut(s)	156, 407, 548, 701, 1207
AdeI	CACNNNGTG	1 cut(s)	1420
AfaI	GTAC	1 cut(s)	1497
AfiI	CCNNNNNNNGG	3 cut(s)	329, 851, 928
AgsI	TTSAA	8 cut(s)	209, 379, 475, 533, 553, 678, 1297, 1397
AhdI	GACNNNNNGTC	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	174, 500
AjuI	GAANNNNNNNTTGG	4 cut(s)	597, 629, 1395, 1427
AluBI	AGCT	9 cut(s)	356, 566, 598, 620, 917, 1030, 1267, 1331, 1512
AluI	AGCT	9 cut(s)	356, 566, 598, 620, 917, 1030, 1267, 1331, 1512
Alw21I	GWGCWC	1 cut(s)	1505
Alw26I	GTCTC	4 cut(s)	42, 117, 951, 984
AlwI	GGATC	1 cut(s)	1281
Ama87I	CYCGRG	1 cut(s)	1432
AoxI	GGCC	5 cut(s)	841, 853, 1230, 1399, 1464
ApaI	GGGCCC	1 cut(s)	1234
ApeKI	GCWGC	3 cut(s)	566, 587, 768
ApoI	RAATTY	5 cut(s)	156, 407, 548, 701, 1207
Asp700I	GAANNNNTTC	1 cut(s)	407
AspS9I	GGNCC	5 cut(s)	842, 1230, 1231, 1464, 1539
AsuHPI	GGTGA	5 cut(s)	1344, 1432, 1457, 1462, 1515
AvaI	CYCGRG	1 cut(s)	1432
AvaII	GGWCC	1 cut(s)	1539
BaeGI	GKGCMC	1 cut(s)	1234
BanI	GGYRCC	1 cut(s)	1090
BanII	GRGCYC	1 cut(s)	1234
BauI	CACGAG	1 cut(s)	1415
BbsI	GAAGAC	2 cut(s)	157, 1052
Bbv12I	GWGCWC	1 cut(s)	1505
BbvI	GCAGC	3 cut(s)	553, 574, 755
BccI	CCATC	2 cut(s)	638, 1255
BcgI	CGANNNNNNTGC	4 cut(s)	677, 711, 1048, 1082
BciT130I	CCWGG	2 cut(s)	176, 502
BciVI	GTATCC	1 cut(s)	1076
BcoDI	GTCTC	4 cut(s)	42, 117, 951, 984
BfaI	CTAG	2 cut(s)	914, 1564
BfmI	CTRYAG	2 cut(s)	1077, 1377
BfuI	GTATCC	1 cut(s)	1076
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	3 cut(s)	567, 588, 769
BlpI	GCTNAGC	2 cut(s)	70, 1026
BlsI	GCNGC	3 cut(s)	568, 589, 770
Bme1390I	CCNGG	2 cut(s)	176, 502
Bme18I	GGWCC	1 cut(s)	1539
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	1432
BmgT120I	GGNCC	5 cut(s)	842, 1230, 1231, 1464, 1539
BmiI	GGNNCC	2 cut(s)	1092, 1232
BmrFI	CCNGG	2 cut(s)	176, 502
BmsI	GCATC	3 cut(s)	574, 755, 780
BpiI	GAAGAC	2 cut(s)	157, 1052
Bpu1102I	GCTNAGC	2 cut(s)	70, 1026
BsaI	GGTCTC	1 cut(s)	984
BsaJI	CCNNGG	2 cut(s)	501, 1473
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 851, 928
Bse118I	RCCGGY	1 cut(s)	1354
Bse1I	ACTGG	3 cut(s)	189, 541, 875
Bse3DI	GCAATG	1 cut(s)	900
BseBI	CCWGG	2 cut(s)	176, 502
BseDI	CCNNGG	2 cut(s)	501, 1473
BseGI	GGATG	1 cut(s)	770
BseLI	CCNNNNNNNGG	3 cut(s)	329, 851, 928
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	2 cut(s)	375, 1281
BseNI	ACTGG	3 cut(s)	189, 541, 875
BseRI	GAGGAG	3 cut(s)	30, 944, 1055
BseSI	GKGCMC	1 cut(s)	1234
BseXI	GCAGC	3 cut(s)	553, 574, 755
BseYI	CCCAGC	1 cut(s)	299
BsgI	GTGCAG	3 cut(s)	12, 83, 386
BshFI	GGCC	5 cut(s)	843, 855, 1232, 1401, 1466
BshNI	GGYRCC	1 cut(s)	1090
BsiHKAI	GWGCWC	1 cut(s)	1505
BsiHKCI	CYCGRG	1 cut(s)	1432
BsiSI	CCGG	1 cut(s)	1355
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	329, 851, 928
BsmAI	GTCTC	4 cut(s)	42, 117, 951, 984
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	5 cut(s)	843, 855, 1232, 1401, 1466
Bso31I	GGTCTC	1 cut(s)	984
BsoBI	CYCGRG	1 cut(s)	1432
Bsp120I	GGGCCC	1 cut(s)	1230
Bsp1286I	GDGCHC	2 cut(s)	1234, 1505
Bsp1407I	TGTACA	1 cut(s)	1495
Bsp143I	GATC	3 cut(s)	511, 526, 1273
Bsp1720I	GCTNAGC	2 cut(s)	70, 1026
BspACI	CCGC	3 cut(s)	107, 286, 1542
BspANI	GGCC	5 cut(s)	843, 855, 1232, 1401, 1466
BspCNI	CTCAG	2 cut(s)	374, 1282
BspLI	GGNNCC	2 cut(s)	1092, 1232
BspMAI	CTGCAG	1 cut(s)	1381
BspPI	GGATC	1 cut(s)	1281
BspT107I	GGYRCC	1 cut(s)	1090
BspTNI	GGTCTC	1 cut(s)	984
BsrDI	GCAATG	1 cut(s)	900
BsrFI	RCCGGY	1 cut(s)	1354
BsrGI	TGTACA	1 cut(s)	1495
BsrI	ACTGG	3 cut(s)	189, 541, 875
BssAI	RCCGGY	1 cut(s)	1354
BssECI	CCNNGG	2 cut(s)	501, 1473
BssMI	GATC	3 cut(s)	511, 526, 1273
BssNAI	GTATAC	1 cut(s)	799
BssSI	CACGAG	1 cut(s)	1415
Bst1107I	GTATAC	1 cut(s)	799
Bst2BI	CACGAG	1 cut(s)	1415
Bst2UI	CCWGG	2 cut(s)	176, 502
Bst4CI	ACNGT	4 cut(s)	36, 91, 1142, 1518
Bst6I	CTCTTC	2 cut(s)	1032, 1299
BstAUI	TGTACA	1 cut(s)	1495
BstC8I	GCNNGC	2 cut(s)	1391, 1505
BstDEI	CTNAG	6 cut(s)	70, 361, 1002, 1026, 1290, 1361
BstENI	CCTNNNNNAGG	1 cut(s)	926
BstF5I	GGATG	1 cut(s)	770
BstKTI	GATC	3 cut(s)	514, 529, 1276
BstMAI	GTCTC	4 cut(s)	42, 117, 951, 984
BstMBI	GATC	3 cut(s)	511, 526, 1273
BstMWI	GCNNNNNNNGC	1 cut(s)	1509
BstNI	CCWGG	2 cut(s)	176, 502
BstNSI	RCATGY	1 cut(s)	1393
BstSCI	CCNGG	2 cut(s)	174, 500
BstSFI	CTRYAG	2 cut(s)	1077, 1377
BstSLI	GKGCMC	1 cut(s)	1234
BstV1I	GCAGC	3 cut(s)	553, 574, 755
BstV2I	GAAGAC	2 cut(s)	157, 1052
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BstZ17I	GTATAC	1 cut(s)	799
BsuI	GTATCC	1 cut(s)	1076
BsuRI	GGCC	5 cut(s)	843, 855, 1232, 1401, 1466
BtsCI	GGATG	1 cut(s)	770
BtsIMutI	CAGTG	4 cut(s)	87, 299, 369, 938
Cac8I	GCNNGC	2 cut(s)	1391, 1505
Cfr10I	RCCGGY	1 cut(s)	1354
Cfr13I	GGNCC	5 cut(s)	842, 1230, 1231, 1464, 1539
CpoI	CGGWCCG	1 cut(s)	1539
Csp6I	GTAC	1 cut(s)	1496
CspI	CGGWCCG	1 cut(s)	1539
CviAII	CATG	6 cut(s)	517, 721, 830, 926, 1087, 1390
CviQI	GTAC	1 cut(s)	1496
DdeI	CTNAG	6 cut(s)	70, 361, 1002, 1026, 1290, 1361
DpnI	GATC	3 cut(s)	513, 528, 1275
DpnII	GATC	3 cut(s)	511, 526, 1273
DraI	TTTAAA	2 cut(s)	253, 547
DraIII	CACNNNGTG	1 cut(s)	1420
DriI	GACNNNNNGTC	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	1032, 1299
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EarI	CTCTTC	2 cut(s)	1032, 1299
Eco147I	AGGCCT	1 cut(s)	855
Eco24I	GRGCYC	1 cut(s)	1234
Eco31I	GGTCTC	1 cut(s)	984
Eco32I	GATATC	2 cut(s)	351, 1008
Eco47I	GGWCC	1 cut(s)	1539
Eco88I	CYCGRG	1 cut(s)	1432
EcoNI	CCTNNNNNAGG	1 cut(s)	926
EcoO109I	RGGNCCY	2 cut(s)	1231, 1464
EcoRII	CCWGG	2 cut(s)	174, 500
EcoRV	GATATC	2 cut(s)	351, 1008
EcoT22I	ATGCAT	1 cut(s)	1105
EcoT38I	GRGCYC	1 cut(s)	1234
FaeI	CATG	6 cut(s)	520, 724, 833, 929, 1090, 1393
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	6 cut(s)	516, 720, 829, 925, 1086, 1389
FauNDI	CATATG	1 cut(s)	337
FblI	GTMKAC	2 cut(s)	798, 935
Fnu4HI	GCNGC	3 cut(s)	567, 588, 769
FokI	GGATG	1 cut(s)	777
FriOI	GRGCYC	1 cut(s)	1234
Fsp4HI	GCNGC	3 cut(s)	567, 588, 769
FspBI	CTAG	2 cut(s)	914, 1564
GluI	GCNGC	3 cut(s)	567, 588, 769
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	5 cut(s)	843, 855, 1232, 1401, 1466
HapII	CCGG	1 cut(s)	1355
Hin1II	CATG	6 cut(s)	520, 724, 833, 929, 1090, 1393
HincII	GTYRAC	2 cut(s)	265, 936
HindII	GTYRAC	2 cut(s)	265, 936
HindIII	AAGCTT	2 cut(s)	596, 1510
HinfI	GANTC	2 cut(s)	932, 1065
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	1355
HphI	GGTGA	5 cut(s)	1344, 1432, 1457, 1462, 1515
Hpy166II	GTNNAC	6 cut(s)	265, 625, 799, 936, 1138, 1414
Hpy188I	TCNGA	8 cut(s)	13, 122, 348, 373, 488, 1012, 1260, 1291
Hpy188III	TCNNGA	5 cut(s)	330, 698, 1173, 1223, 1415
Hpy8I	GTNNAC	6 cut(s)	265, 625, 799, 936, 1138, 1414
HpyAV	CCTTC	6 cut(s)	599, 770, 845, 1229, 1391, 1477
HpyCH4III	ACNGT	4 cut(s)	36, 91, 1142, 1518
HpyCH4IV	ACGT	3 cut(s)	165, 267, 1185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1509
HpyF3I	CTNAG	6 cut(s)	70, 361, 1002, 1026, 1290, 1361
HpySE526I	ACGT	3 cut(s)	165, 267, 1185
Hsp92II	CATG	6 cut(s)	520, 724, 833, 929, 1090, 1393
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	511, 526, 1273
LmnI	GCTCC	2 cut(s)	617, 1264
Lsp1109I	GCAGC	3 cut(s)	553, 574, 755
LweI	GCATC	3 cut(s)	574, 755, 780
MaeI	CTAG	2 cut(s)	914, 1564
MaeII	ACGT	3 cut(s)	165, 267, 1185
MaeIII	GTNAC	2 cut(s)	1121, 1445
MalI	GATC	3 cut(s)	513, 528, 1275
MboI	GATC	3 cut(s)	511, 526, 1273
MboII	GAAGA	8 cut(s)	162, 415, 521, 666, 1049, 1057, 1316, 1435
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	1234, 1505
MlyI	GAGTC	2 cut(s)	941, 1074
MmeI	TCCRAC	2 cut(s)	127, 1035
Mph1103I	ATGCAT	1 cut(s)	1105
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	9 cut(s)	162, 243, 252, 264, 270, 546, 561, 663, 996
MspI	CCGG	1 cut(s)	1355
MspR9I	CCNGG	2 cut(s)	176, 502
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	2 cut(s)	176, 502
MwoI	GCNNNNNNNGC	1 cut(s)	1509
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	3 cut(s)	511, 526, 1273
NlaIII	CATG	6 cut(s)	520, 724, 833, 929, 1090, 1393
NlaIV	GGNNCC	2 cut(s)	1092, 1232
NmuCI	GTSAC	2 cut(s)	1121, 1445
NsiI	ATGCAT	1 cut(s)	1105
NspI	RCATGY	1 cut(s)	1393
PaeI	GCATGC	1 cut(s)	1393
PceI	AGGCCT	1 cut(s)	855
PctI	GAATGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	3 cut(s)	568, 589, 770
PleI	GAGTC	2 cut(s)	940, 1073
PpsI	GAGTC	2 cut(s)	940, 1073
Psp1406I	AACGTT	2 cut(s)	165, 267
Psp6I	CCWGG	2 cut(s)	174, 500
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	2 cut(s)	174, 500
PspN4I	GGNNCC	2 cut(s)	1092, 1232
PspOMI	GGGCCC	1 cut(s)	1230
PspPI	GGNCC	5 cut(s)	842, 1230, 1231, 1464, 1539
PstI	CTGCAG	1 cut(s)	1381
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	1 cut(s)	1497
RsaNI	GTAC	1 cut(s)	1496
Rsr2I	CGGWCCG	1 cut(s)	1539
RsrII	CGGWCCG	1 cut(s)	1539
SalI	GTCGAC	1 cut(s)	934
SaqAI	TTAA	9 cut(s)	162, 243, 252, 264, 270, 546, 561, 663, 996
SatI	GCNGC	3 cut(s)	567, 588, 769
Sau3AI	GATC	3 cut(s)	511, 526, 1273
Sau96I	GGNCC	5 cut(s)	842, 1230, 1231, 1464, 1539
SchI	GAGTC	2 cut(s)	941, 1074
ScrFI	CCNGG	2 cut(s)	176, 502
SduI	GDGCHC	2 cut(s)	1234, 1505
SfaNI	GCATC	3 cut(s)	574, 755, 780
SfcI	CTRYAG	2 cut(s)	1077, 1377
SinI	GGWCC	1 cut(s)	1539
SphI	GCATGC	1 cut(s)	1393
SseBI	AGGCCT	1 cut(s)	855
SsiI	CCGC	3 cut(s)	107, 286, 1542
SspMI	CTAG	2 cut(s)	914, 1564
StuI	AGGCCT	1 cut(s)	855
StyD4I	CCNGG	2 cut(s)	174, 500
TaaI	ACNGT	4 cut(s)	36, 91, 1142, 1518
TaiI	ACGT	3 cut(s)	168, 270, 1188
TaqI	TCGA	4 cut(s)	582, 774, 935, 1276
TaqII	GACCGA	1 cut(s)	1002
TatI	WGTACW	1 cut(s)	1495
Tru1I	TTAA	9 cut(s)	162, 243, 252, 264, 270, 546, 561, 663, 996
Tru9I	TTAA	9 cut(s)	162, 243, 252, 264, 270, 546, 561, 663, 996
TscAI	CASTG	4 cut(s)	94, 299, 369, 945
TseFI	GTSAC	2 cut(s)	1121, 1445
TseI	GCWGC	3 cut(s)	566, 587, 768
Tsp45I	GTSAC	2 cut(s)	1121, 1445
TspDTI	ATGAA	5 cut(s)	17, 400, 726, 941, 1338
TspGWI	ACGGA	1 cut(s)	1552
TspRI	CASTG	4 cut(s)	94, 299, 369, 945
VpaK11BI	GGWCC	1 cut(s)	1539
XagI	CCTNNNNNAGG	1 cut(s)	926
XapI	RAATTY	5 cut(s)	156, 407, 548, 701, 1207
XceI	RCATGY	1 cut(s)	1393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	836
XmiI	GTMKAC	2 cut(s)	798, 935
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	2 cut(s)	914, 1564
Zsp2I	ATGCAT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.