MD05G1294700.v1.1

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
42709322 .. 42711133
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1294700.v1.1.491

Sequence Viewer

Length: 879 bp
ATGAACAACTCTGAATTGTACAAAACTGCACGACTGTCTCCTCTTTCACTCACATATTATGCTCGTTGCTTAGCATATGGAAATTACACTGTGAAACTTCACTTTGCGGAAATAGTTCTCAGAGACAACAGGTCTTATTATGGTGTTGGAAGACGAATTTTTAACGTTTATATCCAGGAAAAACTGGTTTTGGAGGATTTTGATATTGAAAAGAAAGCACAAGGGGTTGATAAGGAAGCAGTTGAGGTATTTACAGCAGTTGTTAGCGTCAAGACTTTAGAAATCCGCTTTCAGTGGGCTGGGAAAGGGACAACAAATGTTCCAACAAGAGGAATATATGGTTCTCTGATATCAGCTATCTCAGTGCAGTCTGATTTCAAGCCGCCTAGCGAAAGGAAGAAATTCATTGTGATTGGAGTTGTTTCAGCGTTATTCCTTCTTTTCGTAATTTTGGGCATTCTTTGGTTGAAAGGCTGTTTCCGAGGCAGGACAACCAGGGAACAAGATCTCATGGGATTAGACCTGCAAACTGGTTTCTTTAAATTCAAGCAACTTAAAGCTGCAACTAATAACTTCGATGCTGCAAACAAGCTTGGGGAAGGTGGCTTTGGAGTTGTTTACAAGGGCGAATTATTAGATGGCACTTTTATTGCAGTTAAGCAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAAATAGGCATGATTTCTGCCTTACAACACCCAAATCTTGTGAAATTGTATGGATGCTGCATCGAAGGAAATCAGTTATTTCTGGTATACGAATATATGGAGAACAATAGCCTTTCCCATGTTTTGTTTGGTAAGTTGGACAATTTGGAACTCCGGTACTTCTGTATGTTATAA

Protein Analysis

293

Amino Acids

33.02

Weight (kDa)

9.12

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 3 - 120 6.5e-32 Malectin domain
Pkinase PF00069 194 - 277 7.3e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 195 - 285 1.7e-18 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 877
Acc36I ACCTGC 1 cut(s) 531
AccI GTMKAC 1 cut(s) 792
AciI CCGC 3 cut(s) 107, 286, 383
AclI AACGTT 1 cut(s) 165
AcsI RAATTY 4 cut(s) 156, 401, 542, 695
AfaI GTAC 2 cut(s) 20, 863
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 5 cut(s) 209, 379, 469, 547, 672
AhdI GACNNNNNGTC 1 cut(s) 130
AjnI CCWGG 2 cut(s) 174, 494
AjuI GAANNNNNNNTTGG 2 cut(s) 591, 623
AluBI AGCT 3 cut(s) 356, 560, 592
AluI AGCT 3 cut(s) 356, 560, 592
Alw26I GTCTC 2 cut(s) 42, 117
ApeKI GCWGC 3 cut(s) 560, 581, 762
ApoI RAATTY 4 cut(s) 156, 401, 542, 695
Asp700I GAANNNNTTC 2 cut(s) 114, 401
BaeI ACNNNNGTAYC 1 cut(s) 853
BbsI GAAGAC 1 cut(s) 157
BbvI GCAGC 3 cut(s) 547, 568, 749
BccI CCATC 1 cut(s) 632
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 2 cut(s) 176, 496
BcoDI GTCTC 2 cut(s) 42, 117
BfaI CTAG 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 531
BglII AGATCT 1 cut(s) 505
BisI GCNGC 4 cut(s) 383, 561, 582, 763
BlpI GCTNAGC 1 cut(s) 70
BlsI GCNGC 4 cut(s) 384, 562, 583, 764
Bme1390I CCNGG 2 cut(s) 176, 496
BmeRI GACNNNNNGTC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 176, 496
BmsI GCATC 3 cut(s) 568, 749, 774
BpiI GAAGAC 1 cut(s) 157
Bpu1102I GCTNAGC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 481, 495
BsaWI WCCGGW 1 cut(s) 858
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 189, 535
BseBI CCWGG 2 cut(s) 176, 496
BseDI CCNNGG 2 cut(s) 481, 495
BseGI GGATG 1 cut(s) 764
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 2 cut(s) 133, 375
BseNI ACTGG 2 cut(s) 189, 535
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 3 cut(s) 547, 568, 749
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 2 cut(s) 12, 386
BsiSI CCGG 1 cut(s) 859
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 2 cut(s) 42, 117
BsmFI GGGAC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 1 cut(s) 505
Bsp1720I GCTNAGC 1 cut(s) 70
BspACI CCGC 3 cut(s) 107, 286, 383
BspCNI CTCAG 2 cut(s) 132, 374
BspMI ACCTGC 1 cut(s) 531
BsrGI TGTACA 1 cut(s) 18
BsrI ACTGG 2 cut(s) 189, 535
BssECI CCNNGG 2 cut(s) 481, 495
BssMI GATC 1 cut(s) 505
BssNAI GTATAC 1 cut(s) 793
Bst1107I GTATAC 1 cut(s) 793
Bst2UI CCWGG 2 cut(s) 176, 496
Bst4CI ACNGT 2 cut(s) 36, 91
BstAUI TGTACA 1 cut(s) 18
BstDEI CTNAG 3 cut(s) 70, 119, 361
BstF5I GGATG 1 cut(s) 764
BstKTI GATC 1 cut(s) 508
BstMAI GTCTC 2 cut(s) 42, 117
BstMBI GATC 1 cut(s) 505
BstNI CCWGG 2 cut(s) 176, 496
BstSCI CCNGG 2 cut(s) 174, 494
BstV1I GCAGC 3 cut(s) 547, 568, 749
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BstZ17I GTATAC 1 cut(s) 793
BtsCI GGATG 1 cut(s) 764
BtsIMutI CAGTG 3 cut(s) 87, 299, 369
BveI ACCTGC 1 cut(s) 531
CseI GACGC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 19, 862
CviAII CATG 3 cut(s) 511, 715, 824
CviJI RGCY 8 cut(s) 299, 356, 382, 474, 560, 592, 606, 816
CviKI_1 RGCY 8 cut(s) 299, 356, 382, 474, 560, 592, 606, 816
CviQI GTAC 2 cut(s) 19, 862
DdeI CTNAG 3 cut(s) 70, 119, 361
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
DraI TTTAAA 1 cut(s) 541
DriI GACNNNNNGTC 1 cut(s) 130
Eam1105I GACNNNNNGTC 1 cut(s) 130
Eco32I GATATC 1 cut(s) 351
EcoRII CCWGG 2 cut(s) 174, 494
EcoRV GATATC 1 cut(s) 351
FaeI CATG 3 cut(s) 514, 718, 827
FaqI GGGAC 1 cut(s) 322
FatI CATG 3 cut(s) 510, 714, 823
FauNDI CATATG 1 cut(s) 76
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 4 cut(s) 383, 561, 582, 763
FokI GGATG 1 cut(s) 771
Fsp4HI GCNGC 4 cut(s) 383, 561, 582, 763
FspBI CTAG 1 cut(s) 387
GluI GCNGC 4 cut(s) 383, 561, 582, 763
GsaI CCCAGC 1 cut(s) 303
HapII CCGG 1 cut(s) 859
HgaI GACGC 1 cut(s) 256
Hin1II CATG 3 cut(s) 514, 718, 827
HindIII AAGCTT 1 cut(s) 590
HpaII CCGG 1 cut(s) 859
Hpy166II GTNNAC 2 cut(s) 619, 793
Hpy188I TCNGA 5 cut(s) 13, 122, 348, 373, 482
Hpy188III TCNNGA 2 cut(s) 271, 692
Hpy8I GTNNAC 2 cut(s) 619, 793
HpyAV CCTTC 3 cut(s) 446, 593, 764
HpyCH4III ACNGT 2 cut(s) 36, 91
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 7 cut(s) 29, 367, 526, 563, 584, 653, 765
HpyF3I CTNAG 3 cut(s) 70, 119, 361
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 3 cut(s) 514, 718, 827
Kzo9I GATC 1 cut(s) 505
Lsp1109I GCAGC 3 cut(s) 547, 568, 749
LweI GCATC 3 cut(s) 568, 749, 774
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 165
MalI GATC 1 cut(s) 507
MboI GATC 1 cut(s) 505
MboII GAAGA 3 cut(s) 162, 409, 660
MflI RGATCY 1 cut(s) 505
MmeI TCCRAC 3 cut(s) 127, 347, 822
MnlI CCTC 5 cut(s) 51, 187, 238, 323, 476
MroXI GAANNNNTTC 2 cut(s) 114, 401
MseI TTAA 4 cut(s) 162, 540, 555, 657
MspI CCGG 1 cut(s) 859
MspR9I CCNGG 2 cut(s) 176, 496
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 2 cut(s) 176, 496
NdeI CATATG 1 cut(s) 76
NdeII GATC 1 cut(s) 505
NlaIII CATG 3 cut(s) 514, 718, 827
PctI GAATGC 1 cut(s) 456
PdmI GAANNNNTTC 2 cut(s) 114, 401
PfoI TCCNGGA 1 cut(s) 174
PkrI GCNGC 4 cut(s) 384, 562, 583, 764
PsiI TTATAA 1 cut(s) 877
Psp1406I AACGTT 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 174, 494
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 2 cut(s) 174, 494
PsuI RGATCY 1 cut(s) 505
RsaI GTAC 2 cut(s) 20, 863
RsaNI GTAC 2 cut(s) 19, 862
SaqAI TTAA 4 cut(s) 162, 540, 555, 657
SatI GCNGC 4 cut(s) 383, 561, 582, 763
Sau3AI GATC 1 cut(s) 505
ScrFI CCNGG 2 cut(s) 176, 496
SetI ASST 8 cut(s) 134, 168, 249, 358, 525, 562, 594, 604
SfaNI GCATC 3 cut(s) 568, 749, 774
SsiI CCGC 3 cut(s) 107, 286, 383
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 174, 494
TaaI ACNGT 2 cut(s) 36, 91
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 576, 768
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 385
Tru1I TTAA 4 cut(s) 162, 540, 555, 657
Tru9I TTAA 4 cut(s) 162, 540, 555, 657
TscAI CASTG 3 cut(s) 94, 299, 369
TseI GCWGC 3 cut(s) 560, 581, 762
TspDTI ATGAA 3 cut(s) 17, 394, 720
TspRI CASTG 3 cut(s) 94, 299, 369
XapI RAATTY 4 cut(s) 156, 401, 542, 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmiI GTMKAC 1 cut(s) 792
XmnI GAANNNNTTC 2 cut(s) 114, 401
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.