Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

8580421 .. 8587945

Gene Structure 7525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG094000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAAGATGGCAATTAGAGTTGGAGTTGGTGTTTGGAAAACCATCATGAACCTCAACTTGTTGGTGATACTAGTTCACTGCAGTTTTGGATCAGTCAAAGTTGAAGCTCTTTCGACTCGTCTTCCTGATACTGAAGGCTGTCGGGTCACTCGGGTGGATAAACAAACATCAAGAGAAGAAGGTGCTGCCAAGCTCTATGCCCTTGTTTTGCAACAAAGAGGGAACTTACTGGAGCTGGTGGATCCAAGGTTGGGGTCCGATTTCAGTAAGAAAGAGGCGATTAGAACGATCAAAGTAGCTCTACTGTGCGCCAACCCAACAGCTGCACTTAGGCCTACCATGTCTGCAGTAGTGAGTATGCTTGAAGGGCGGACCCCCGTGGATGAAGTGGTTCTGGATCCAAGTATCCTTGGTGATGAAATGACGAGGTTAAGAGCCTTCGAAGAGCAGTTTGATCGTAGTACTGCAGAAGGGAGCTCCCCAAGTGGAAGTCACAGCCTCATTCGTTCATCAGATGCACCATGGACCGGTTCTTCTGTTACTACTACGTCTTCAGATCTCTATAAATGTAGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

192

Amino Acids

20.86

Weight (kDa)

7.67

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	5 cut(s)	97, 236, 249, 392, 405
AcuI	CTGAAG	2 cut(s)	153, 537
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	2 cut(s)	251, 527
AgeI	ACCGGT	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	104, 365
AhlI	ACTAGT	1 cut(s)	70
AleI	CACNNNNGTG	1 cut(s)	152
AluBI	AGCT	6 cut(s)	107, 193, 235, 299, 323, 477
AluI	AGCT	6 cut(s)	107, 193, 235, 299, 323, 477
Alw21I	GWGCWC	1 cut(s)	479
AlwI	GGATC	5 cut(s)	97, 236, 249, 392, 405
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	2 cut(s)	185, 323
AsiGI	ACCGGT	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	3 cut(s)	255, 372, 525
AsuHPI	GGTGA	2 cut(s)	76, 425
AsuII	TTCGAA	1 cut(s)	441
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	3 cut(s)	255, 372, 525
BamHI	GGATCC	2 cut(s)	241, 397
BanII	GRGCYC	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	113, 543
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	172, 310
BccI	CCATC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciVI	GTATCC	1 cut(s)	416
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	3 cut(s)	79, 345, 465
BfuI	GTATCC	1 cut(s)	416
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	2 cut(s)	186, 324
BlsI	GCNGC	2 cut(s)	187, 325
BmcAI	AGTACT	1 cut(s)	463
Bme18I	GGWCC	3 cut(s)	255, 372, 525
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	3 cut(s)	255, 372, 525
BmiI	GGNNCC	4 cut(s)	243, 256, 374, 399
BmsI	GCATC	1 cut(s)	505
BpiI	GAAGAC	2 cut(s)	113, 543
BpmI	CTGGAG	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	441
BsaJI	CCNNGG	4 cut(s)	245, 378, 409, 521
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 527
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	234
BseDI	CCNNGG	4 cut(s)	245, 378, 409, 521
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	251, 527
BseNI	ACTGG	1 cut(s)	234
BseXI	GCAGC	2 cut(s)	172, 310
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	334
BshTI	ACCGGT	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	528
BslI	CCNNNNNNNGG	2 cut(s)	251, 527
BsnI	GGCC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	6 cut(s)	89, 241, 288, 397, 454, 556
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	243, 256, 374, 399
BspMAI	CTGCAG	3 cut(s)	83, 349, 469
BspPI	GGATC	5 cut(s)	97, 236, 249, 392, 405
BspQI	GCTCTTC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	4 cut(s)	245, 378, 409, 521
BssMI	GATC	6 cut(s)	89, 241, 288, 397, 454, 556
BssT1I	CCWWGG	3 cut(s)	245, 409, 521
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	438
BstBI	TTCGAA	1 cut(s)	441
BstDEI	CTNAG	1 cut(s)	329
BstDSI	CCRYGG	2 cut(s)	378, 521
BstF5I	GGATG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	6 cut(s)	92, 244, 291, 400, 457, 559
BstMBI	GATC	6 cut(s)	89, 241, 288, 397, 454, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstSFI	CTRYAG	3 cut(s)	79, 345, 465
BstV1I	GCAGC	2 cut(s)	172, 310
BstV2I	GAAGAC	2 cut(s)	113, 543
BstX2I	RGATCY	3 cut(s)	241, 397, 556
BstYI	RGATCY	3 cut(s)	241, 397, 556
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	334
BtgI	CCRYGG	2 cut(s)	378, 521
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	311
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	3 cut(s)	255, 372, 525
Csp6I	GTAC	1 cut(s)	462
CspAI	ACCGGT	1 cut(s)	527
CviAII	CATG	3 cut(s)	46, 340, 522
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	6 cut(s)	91, 243, 290, 399, 456, 558
DpnII	GATC	6 cut(s)	89, 241, 288, 397, 454, 556
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	385
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	3 cut(s)	245, 409, 521
Eco147I	AGGCCT	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	479
Eco47I	GGWCC	3 cut(s)	255, 372, 525
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	153, 537
Eco88I	CYCGRG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	477
EcoT14I	CCWWGG	3 cut(s)	245, 409, 521
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	3 cut(s)	245, 409, 521
FaeI	CATG	3 cut(s)	49, 343, 525
FaiI	YATR	6 cut(s)	47, 198, 341, 359, 523, 564
FatI	CATG	3 cut(s)	45, 339, 521
Fnu4HI	GCNGC	2 cut(s)	186, 324
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	186, 324
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	2 cut(s)	186, 324
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	1 cut(s)	528
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	3 cut(s)	49, 343, 525
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	2 cut(s)	76, 425
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	259, 514, 556
Hpy188III	TCNNGA	4 cut(s)	46, 125, 171, 395
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	5 cut(s)	128, 173, 359, 448, 464
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	6 cut(s)	81, 211, 326, 347, 467, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	3 cut(s)	49, 343, 525
HspAI	GCGC	1 cut(s)	309
Kzo9I	GATC	6 cut(s)	89, 241, 288, 397, 454, 556
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	3 cut(s)	232, 474, 482
LpnPI	CCDG	5 cut(s)	138, 215, 221, 380, 541
Lsp1109I	GCAGC	2 cut(s)	172, 310
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	3 cut(s)	145, 491, 538
MalI	GATC	6 cut(s)	91, 243, 290, 399, 456, 558
MboI	GATC	6 cut(s)	89, 241, 288, 397, 454, 556
MboII	GAAGA	6 cut(s)	16, 113, 188, 455, 525, 543
MflI	RGATCY	3 cut(s)	241, 397, 556
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	5 cut(s)	62, 212, 268, 420, 509
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	431, 577
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	521
NdeII	GATC	6 cut(s)	89, 241, 288, 397, 454, 556
NlaIII	CATG	3 cut(s)	49, 343, 525
NlaIV	GGNNCC	4 cut(s)	243, 256, 374, 399
NmuCI	GTSAC	2 cut(s)	145, 491
NspV	TTCGAA	1 cut(s)	441
OliI	CACNNNNGTG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	390
PinAI	ACCGGT	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	187, 325
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp124BI	GAGCTC	1 cut(s)	479
PspN4I	GGNNCC	4 cut(s)	243, 256, 374, 399
PspPI	GGNCC	3 cut(s)	255, 372, 525
PstI	CTGCAG	3 cut(s)	83, 349, 469
PsuI	RGATCY	3 cut(s)	241, 397, 556
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	479
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	431, 577
SatI	GCNGC	2 cut(s)	186, 324
Sau3AI	GATC	6 cut(s)	89, 241, 288, 397, 454, 556
Sau96I	GGNCC	3 cut(s)	255, 372, 525
ScaI	AGTACT	1 cut(s)	463
SchI	GAGTC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	3 cut(s)	79, 345, 465
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	3 cut(s)	255, 372, 525
SmiMI	CAYNNNNRTG	1 cut(s)	152
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	1 cut(s)	12
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	479
StuI	AGGCCT	1 cut(s)	334
StyI	CCWWGG	3 cut(s)	245, 409, 521
TaaI	ACNGT	1 cut(s)	306
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	2 cut(s)	113, 441
TasI	AATT	1 cut(s)	12
TatI	WGTACW	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	431, 577
Tru9I	TTAA	2 cut(s)	431, 577
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	2 cut(s)	145, 491
TseI	GCWGC	2 cut(s)	185, 323
Tsp45I	GTSAC	2 cut(s)	145, 491
TspDTI	ATGAA	5 cut(s)	17, 62, 399, 432, 498
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	3 cut(s)	255, 372, 525
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	1 cut(s)	71
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.