Rh5AG094100

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
8596156 .. 8601736
5581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG094100.1

Sequence Viewer

Length: 282 bp
ATGAAATGCCAATACACAAATCTCTTTGAAACTGGTCGGGGTACACTTTTGGATGGTACTATAATTGCAGTTAAGCAACTATCTTCAAAATCAAAGCAGGGAAATCGTGAATTTGTGAACGAAATAGGCATGATCTCTTGTTTGCAGCATCCAAATCTGGTTAAAATGCATGGATGTTGTATTGAAGCAAACCAGTTATTGTTGGTGTATGAGTACCTGGAGAACAATAGCCTTGCTCGCGCCTTGTACGGTAAGCTTATCATGTCAAGGAACAAATCCTGA

Protein Analysis

93

Amino Acids

10.48

Weight (kDa)

9.0

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 18 - 89 8.1e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 19 - 82 4.1e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 240
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 4 cut(s) 43, 58, 215, 248
AgsI TTSAA 3 cut(s) 29, 87, 185
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 218
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 157
BpmI CTGGAG 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 37, 193
BseBI CCWGG 1 cut(s) 218
BseGI GGATG 3 cut(s) 58, 148, 179
BseNI ACTGG 2 cut(s) 37, 193
BseXI GCAGC 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 240
Bsp143I GATC 1 cut(s) 132
BspFNI CGCG 1 cut(s) 240
BsrI ACTGG 2 cut(s) 37, 193
BssMI GATC 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 238
BstF5I GGATG 3 cut(s) 58, 148, 179
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 157
BtsCI GGATG 3 cut(s) 58, 148, 179
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 242
Csp6I GTAC 4 cut(s) 42, 57, 214, 247
CviAII CATG 3 cut(s) 130, 170, 262
CviJI RGCY 2 cut(s) 231, 256
CviKI_1 RGCY 2 cut(s) 231, 256
CviQI GTAC 4 cut(s) 42, 57, 214, 247
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 171
FaeI CATG 3 cut(s) 133, 173, 265
FaiI YATR 5 cut(s) 62, 131, 171, 210, 263
FatI CATG 3 cut(s) 129, 169, 261
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 3 cut(s) 65, 135, 186
Fsp4HI GCNGC 1 cut(s) 146
GlaI GCGC 1 cut(s) 241
GluI GCNGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 239
HhaI GCGC 1 cut(s) 242
Hin1II CATG 3 cut(s) 133, 173, 265
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 44, 118
Hpy188III TCNNGA 2 cut(s) 107, 279
Hpy8I GTNNAC 2 cut(s) 44, 118
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 3 cut(s) 68, 145, 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
Hsp92II CATG 3 cut(s) 133, 173, 265
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 18, 83, 143, 203, 206, 230
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 157
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 1 cut(s) 75
MluCI AATT 2 cut(s) 63, 110
Mph1103I ATGCAT 1 cut(s) 171
MseI TTAA 2 cut(s) 72, 162
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 237
NdeII GATC 1 cut(s) 132
NlaIII CATG 3 cut(s) 133, 173, 265
NsiI ATGCAT 1 cut(s) 171
PkrI GCNGC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
RsaI GTAC 4 cut(s) 43, 58, 215, 248
RsaNI GTAC 4 cut(s) 42, 57, 214, 247
SaqAI TTAA 2 cut(s) 72, 162
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 218
SetI ASST 2 cut(s) 219, 258
SfaNI GCATC 1 cut(s) 157
Sse9I AATT 2 cut(s) 63, 110
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 251
TasI AATT 2 cut(s) 63, 110
Tru1I TTAA 2 cut(s) 72, 162
Tru9I TTAA 2 cut(s) 72, 162
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.