Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

8118076 .. 8119945

Gene Structure 1870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTTGTAAGACTATTTCATGGTGGAAGAAACACCACAGTTGGAGGAATCAACTTTGAAGGTGACCAAGACCCAGGAGGTCCATCAGCATTCGTTCCTGCTGGAGCTAACTGGGGATTTAGCAACACTGGACATTTCTGGGATACTGAATTTGGTGAAAAATACATAGCAGATAATACATCTGTACTCCGAATGAGCAACTCTGAGTTGTACACAAATGCACGCCTCTCTTCTCTTTCTCTTACGTATTATGCACGCTGCTTGGCAAATGGAAGTTATACTGTGAGACTTCACTTTTCAGAGATAATAATTAGAGGAAATAGATCTTTCCACAGTCTTGGAATACGGATATTTGATGTTTATATTCAGGAGAAACTGATGTTGAAGGATTTTAACATTGAAGTGGAAGCACAAGGGGTTGATAAAGCAGTCATAAAGGAATTTAAAGCAGTTGAGGTGAAGGATAAAACCTTAGAGATCAGATTTCATTGGTCTGGCAAAGGGACAACAGCGTCCCCGAGAAGAGGAGTATATGGTCCTCTTATATCAGCTATCACTATAGAGTTTGAGTCCACTCATTCTGGTCTCCGAAAAGAGTCCACTCCTCGTGATAGCAAAAAGAAGGTATTTACAGTGGCTGGAGCTTCAGTTTTGTGTCTTGTTTTCTTGATTTCAGGCATTCTTTGGGAAAAAGCTTTGAGAAGACTGGATTTGCAAACTGGCTTTTTCACCTTCAAGCAAATTAGAGCTGCCACTAACAGCTTTGATCCTGTAAACAAAATTGGGGAGGGTGGTTTTGGCTCTGTCTATAAGGTAACAAAAACCCTGTGGGACAAAAATAACCCTGGTCGAAGGACAAAAAGAGCACAACACGTCCTTCACTCTTCGAGATCGAACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

300

Amino Acids

33.56

Weight (kDa)

9.76

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	8 - 185	7.3e-33	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	511
AclWI	GGATC	1 cut(s)	761
AcsI	RAATTY	2 cut(s)	149, 440
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	2 cut(s)	186, 212
AfiI	CCNNNNNNNGG	1 cut(s)	524
AflIII	ACRYGT	2 cut(s)	871, 897
AgsI	TTSAA	4 cut(s)	59, 385, 401, 736
AjiI	CACGTC	1 cut(s)	874
AjnI	CCWGG	2 cut(s)	73, 844
AluBI	AGCT	6 cut(s)	107, 551, 644, 695, 749, 762
AluI	AGCT	6 cut(s)	107, 551, 644, 695, 749, 762
Alw21I	GWGCWC	1 cut(s)	868
Alw26I	GTCTC	2 cut(s)	280, 590
AlwI	GGATC	1 cut(s)	761
AlwNI	CAGNNNCTG	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	517
ApeKI	GCWGC	2 cut(s)	258, 749
ApoI	RAATTY	2 cut(s)	149, 440
AspS9I	GGNCC	2 cut(s)	80, 536
AsuHPI	GGTGA	4 cut(s)	74, 167, 469, 721
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	80, 536
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	709
Bbv12I	GWGCWC	1 cut(s)	868
BbvI	GCAGC	2 cut(s)	245, 736
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	2 cut(s)	75, 846
BciVI	GTATCC	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	280, 590
BfmI	CTRYAG	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	2 cut(s)	259, 750
BlsI	GCNGC	2 cut(s)	260, 751
Bme1390I	CCNGG	2 cut(s)	75, 846
Bme18I	GGWCC	2 cut(s)	80, 536
BmeT110I	CYCGRG	1 cut(s)	517
BmgBI	CACGTC	1 cut(s)	874
BmgT120I	GGNCC	2 cut(s)	80, 536
BmrFI	CCNGG	2 cut(s)	75, 846
BmrI	ACTGGG	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	709
BpmI	CTGGAG	2 cut(s)	123, 660
BsaAI	YACGTR	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	73, 844
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
Bse1I	ACTGG	4 cut(s)	116, 133, 711, 724
BseBI	CCWGG	2 cut(s)	75, 846
BseDI	CCNNGG	2 cut(s)	73, 844
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	4 cut(s)	116, 133, 711, 724
BseRI	GAGGAG	2 cut(s)	540, 594
BseXI	GCAGC	2 cut(s)	245, 736
BsiHKAI	GWGCWC	1 cut(s)	868
BsiHKCI	CYCGRG	1 cut(s)	517
BslFI	GGGAC	3 cut(s)	499, 517, 845
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmAI	GTCTC	2 cut(s)	280, 590
BsmFI	GGGAC	3 cut(s)	499, 517, 845
BsmI	GAATGC	2 cut(s)	89, 678
Bso31I	GGTCTC	1 cut(s)	590
BsoBI	CYCGRG	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	868
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	323, 477, 766, 890
BspCNI	CTCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	761
BspTNI	GGTCTC	1 cut(s)	590
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	4 cut(s)	116, 133, 711, 724
BssECI	CCNNGG	2 cut(s)	73, 844
BssMI	GATC	4 cut(s)	323, 477, 766, 890
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	75, 846
Bst4CI	ACNGT	4 cut(s)	40, 283, 335, 634
Bst6I	CTCTTC	3 cut(s)	235, 517, 889
BstAUI	TGTACA	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	223, 256
BstDEI	CTNAG	2 cut(s)	204, 472
BstEII	GGTNACC	1 cut(s)	62
BstKTI	GATC	4 cut(s)	326, 480, 769, 893
BstMAI	GTCTC	2 cut(s)	280, 590
BstMBI	GATC	4 cut(s)	323, 477, 766, 890
BstNI	CCWGG	2 cut(s)	75, 846
BstNSI	RCATGY	1 cut(s)	901
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	73, 844
BstSFI	CTRYAG	1 cut(s)	558
BstSNI	TACGTA	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	245, 736
BstV2I	GAAGAC	1 cut(s)	709
BstX2I	RGATCY	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	323
BsuI	GTATCC	1 cut(s)	136
BtrI	CACGTC	1 cut(s)	874
BtsIMutI	CAGTG	2 cut(s)	126, 639
Cac8I	GCNNGC	2 cut(s)	223, 256
CaiI	CAGNNNCTG	1 cut(s)	638
Cfr13I	GGNCC	2 cut(s)	80, 536
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	185, 211
CviAII	CATG	2 cut(s)	20, 898
CviJI	RGCY	9 cut(s)	107, 551, 638, 644, 695, 723, 749, 762, 801
CviKI_1	RGCY	9 cut(s)	107, 551, 638, 644, 695, 723, 749, 762, 801
CviQI	GTAC	2 cut(s)	185, 211
DdeI	CTNAG	2 cut(s)	204, 472
DpnI	GATC	4 cut(s)	325, 479, 768, 892
DpnII	GATC	4 cut(s)	323, 477, 766, 890
DraI	TTTAAA	1 cut(s)	445
DrdI	GACNNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	511
Eam1104I	CTCTTC	3 cut(s)	235, 517, 889
EarI	CTCTTC	3 cut(s)	235, 517, 889
Eco105I	TACGTA	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	590
Eco47I	GGWCC	2 cut(s)	80, 536
Eco57I	CTGAAG	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoRII	CCWGG	2 cut(s)	73, 844
FaeI	CATG	2 cut(s)	23, 901
FaqI	GGGAC	3 cut(s)	499, 517, 845
FatI	CATG	2 cut(s)	19, 897
Fnu4HI	GCNGC	2 cut(s)	259, 750
Fsp4HI	GCNGC	2 cut(s)	259, 750
GluI	GCNGC	2 cut(s)	259, 750
GsuI	CTGGAG	2 cut(s)	123, 660
HgaI	GACGC	1 cut(s)	501
Hin1II	CATG	2 cut(s)	23, 901
HindIII	AAGCTT	1 cut(s)	693
HinfI	GANTC	3 cut(s)	48, 569, 596
HphI	GGTGA	4 cut(s)	74, 167, 469, 721
Hpy166II	GTNNAC	4 cut(s)	213, 573, 600, 775
Hpy188I	TCNGA	5 cut(s)	191, 205, 301, 482, 590
Hpy188III	TCNNGA	4 cut(s)	368, 608, 667, 888
Hpy8I	GTNNAC	4 cut(s)	213, 573, 600, 775
HpyAV	CCTTC	7 cut(s)	53, 379, 454, 616, 742, 846, 887
HpyCH4III	ACNGT	4 cut(s)	40, 283, 335, 634
HpyCH4IV	ACGT	2 cut(s)	245, 873
HpyCH4V	TGCA	3 cut(s)	221, 254, 715
HpyF3I	CTNAG	2 cut(s)	204, 472
HpySE526I	ACGT	2 cut(s)	245, 873
Hsp92II	CATG	2 cut(s)	23, 901
Kzo9I	GATC	4 cut(s)	323, 477, 766, 890
LmnI	GCTCC	2 cut(s)	104, 641
Lsp1109I	GCAGC	2 cut(s)	245, 736
MaeII	ACGT	2 cut(s)	245, 873
MaeIII	GTNAC	2 cut(s)	62, 814
MalI	GATC	4 cut(s)	325, 479, 768, 892
MboI	GATC	4 cut(s)	323, 477, 766, 890
MboII	GAAGA	5 cut(s)	39, 222, 534, 714, 876
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	868
MluCI	AATT	5 cut(s)	149, 309, 440, 741, 780
MlyI	GAGTC	2 cut(s)	578, 605
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	9 cut(s)	38, 71, 236, 308, 448, 518, 549, 615, 781
MseI	TTAA	2 cut(s)	393, 444
MslI	CAYNNNNRTG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	75, 846
Mva1269I	GAATGC	2 cut(s)	89, 678
MvaI	CCWGG	2 cut(s)	75, 846
NdeII	GATC	4 cut(s)	323, 477, 766, 890
NlaIII	CATG	2 cut(s)	23, 901
NmuCI	GTSAC	1 cut(s)	62
NspI	RCATGY	1 cut(s)	901
PciI	ACATGT	1 cut(s)	897
PctI	GAATGC	2 cut(s)	89, 678
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	260, 751
PleI	GAGTC	2 cut(s)	577, 604
PpsI	GAGTC	2 cut(s)	577, 604
Ppu21I	YACGTR	1 cut(s)	246
PscI	ACATGT	1 cut(s)	897
Psp6I	CCWGG	2 cut(s)	73, 844
PspEI	GGTNACC	1 cut(s)	62
PspGI	CCWGG	2 cut(s)	73, 844
PspPI	GGNCC	2 cut(s)	80, 536
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	2 cut(s)	186, 212
RsaNI	GTAC	2 cut(s)	185, 211
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	393, 444
SatI	GCNGC	2 cut(s)	259, 750
Sau3AI	GATC	4 cut(s)	323, 477, 766, 890
Sau96I	GGNCC	2 cut(s)	80, 536
SchI	GAGTC	2 cut(s)	578, 605
ScrFI	CCNGG	2 cut(s)	75, 846
SduI	GDGCHC	1 cut(s)	868
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	2 cut(s)	80, 536
SmiMI	CAYNNNNRTG	1 cut(s)	401
SnaBI	TACGTA	1 cut(s)	246
Sse9I	AATT	5 cut(s)	149, 309, 440, 741, 780
StyD4I	CCNGG	2 cut(s)	73, 844
TaaI	ACNGT	4 cut(s)	40, 283, 335, 634
TaiI	ACGT	2 cut(s)	248, 876
TaqI	TCGA	3 cut(s)	850, 887, 893
TasI	AATT	5 cut(s)	149, 309, 440, 741, 780
TatI	WGTACW	2 cut(s)	184, 210
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	393, 444
Tru9I	TTAA	2 cut(s)	393, 444
TscAI	CASTG	2 cut(s)	133, 639
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	2 cut(s)	258, 749
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	8, 476
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	2 cut(s)	133, 639
VpaK11BI	GGWCC	2 cut(s)	80, 536
XapI	RAATTY	2 cut(s)	149, 440
XceI	RCATGY	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.