Rh5AG093400

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
8454637 .. 8461510
6874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG093400.1

Sequence Viewer

Length: 600 bp
ATGGCATTTAGCGTTTTTCCAAAAAGCATCATGACTATGGTCATAATGGTTCTCTGCTTCATCTGCATAAACTCAGTCAGATCAGTTGAAGCACAATCCCCGCGCCTTCCTGTTCAAGAAGAGTCCACTCATTCTGGTCTCCGAAAAGAGTCCACTCCTCGTGATAGCAAAAAGAAGGCATTCTTTGGTGGAATGGATGTCTGGATAGCAAGACATCCAGGGAAAAAGGCTCTTGTTTTACAACAAAAAGAGAGTTTAGTGGAGCTTGTGGATCCAAGGTTAGGGTCAGATTTCAGTAACGAAGAGGCGGTTAGAATGGTTAAAGTAGCTCTGCTATGCATCAATCCGGTAGCTGCACTTAGGCCTACCATGTCTGCAGTCGTGAGTATGCTTGAAGGGCGAACCCCTGTCGATGAATTGATTATGGATCCAAATATATATAGTGAAGAAATGAGGTTAACAGCTTTGAGAAATCCATTTGAGCAGATTGCACAAGAGAGAGCAGGTGGAAGTCAAAGCTTGATACATTCGTCCGATACATCATGGAATGATTCTTCTGCTCCTACTATATCTTCAGATCTCTATAAAATCAATCCTTAG

Protein Analysis

199

Amino Acids

22.05

Weight (kDa)

6.32

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 494
AccII CGCG 1 cut(s) 103
AciI CCGC 2 cut(s) 101, 308
AclWI GGATC 4 cut(s) 266, 279, 422, 435
AcuI CTGAAG 1 cut(s) 558
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 3 cut(s) 89, 116, 395
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 5 cut(s) 265, 329, 353, 464, 519
AluI AGCT 5 cut(s) 265, 329, 353, 464, 519
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 4 cut(s) 266, 279, 422, 435
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 105
BaeI ACNNNNGTAYC 2 cut(s) 515, 548
BamHI GGATCC 2 cut(s) 271, 427
BauI CACGAG 1 cut(s) 159
BbvI GCAGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 494
BglII AGATCT 1 cut(s) 577
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 219
BmiI GGNNCC 2 cut(s) 273, 429
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 2 cut(s) 36, 348
BoxI GACNNNNGTC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 218, 275
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 218, 275
BseGI GGATG 2 cut(s) 202, 214
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 340
BsgI GTGCAG 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 1 cut(s) 364
Bso31I GGTCTC 1 cut(s) 143
Bsp143I GATC 4 cut(s) 80, 271, 427, 577
BspACI CCGC 2 cut(s) 101, 308
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 86
BspFNI CGCG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 273, 429
BspMAI CTGCAG 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 4 cut(s) 266, 279, 422, 435
BspTNI GGTCTC 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 218, 275
BssMI GATC 4 cut(s) 80, 271, 427, 577
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 219
Bst6I CTCTTC 2 cut(s) 114, 297
BstDEI CTNAG 3 cut(s) 73, 359, 597
BstF5I GGATG 2 cut(s) 202, 214
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 4 cut(s) 83, 274, 430, 580
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 4 cut(s) 80, 271, 427, 577
BstMWI GCNNNNNNNGC 2 cut(s) 63, 397
BstNI CCWGG 1 cut(s) 219
BstPAI GACNNNNGTC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 375
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 3 cut(s) 271, 427, 577
BstYI RGATCY 3 cut(s) 271, 427, 577
BsuRI GGCC 1 cut(s) 364
BtsCI GGATG 2 cut(s) 202, 214
BveI ACCTGC 1 cut(s) 494
CciI TCATGA 1 cut(s) 30
CfoI GCGC 1 cut(s) 105
CviAII CATG 3 cut(s) 31, 370, 543
CviJI RGCY 7 cut(s) 230, 265, 329, 353, 364, 464, 519
CviKI_1 RGCY 7 cut(s) 230, 265, 329, 353, 364, 464, 519
DdeI CTNAG 3 cut(s) 73, 359, 597
DpnI GATC 4 cut(s) 82, 273, 429, 579
DpnII GATC 4 cut(s) 80, 271, 427, 577
Eam1104I CTCTTC 2 cut(s) 114, 297
EarI CTCTTC 2 cut(s) 114, 297
Eco130I CCWWGG 1 cut(s) 275
Eco147I AGGCCT 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 558
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 3 cut(s) 34, 373, 546
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 3 cut(s) 30, 369, 542
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 2 cut(s) 201, 209
Fsp4HI GCNGC 1 cut(s) 354
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 354
HaeIII GGCC 1 cut(s) 364
HapII CCGG 1 cut(s) 347
HhaI GCGC 1 cut(s) 105
Hin1II CATG 3 cut(s) 34, 373, 546
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 3 cut(s) 122, 149, 551
HpaI GTTAAC 1 cut(s) 459
HpaII CCGG 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 126, 153, 459
Hpy188I TCNGA 5 cut(s) 80, 143, 289, 535, 577
Hpy188III TCNNGA 5 cut(s) 31, 116, 161, 202, 382
Hpy8I GTNNAC 3 cut(s) 126, 153, 459
HpyAV CCTTC 3 cut(s) 116, 169, 389
HpyCH4V TGCA 5 cut(s) 66, 339, 356, 377, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 397
HpyF3I CTNAG 3 cut(s) 73, 359, 597
Hsp92II CATG 3 cut(s) 34, 373, 546
HspAI GCGC 1 cut(s) 103
KspAI GTTAAC 1 cut(s) 459
Kzo9I GATC 4 cut(s) 80, 271, 427, 577
LmnI GCTCC 2 cut(s) 262, 565
LpnPI CCDG 8 cut(s) 120, 123, 187, 204, 231, 360, 420, 489
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 2 cut(s) 36, 348
MaeIII GTNAC 1 cut(s) 296
MalI GATC 4 cut(s) 82, 273, 429, 579
MboI GATC 4 cut(s) 80, 271, 427, 577
MboII GAAGA 5 cut(s) 131, 314, 458, 546, 564
MflI RGATCY 3 cut(s) 271, 427, 577
MluCI AATT 1 cut(s) 416
MlyI GAGTC 2 cut(s) 131, 158
MnlI CCTC 3 cut(s) 168, 298, 447
Mph1103I ATGCAT 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 2 cut(s) 321, 458
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 1 cut(s) 219
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 63, 397
NdeII GATC 4 cut(s) 80, 271, 427, 577
NlaIII CATG 3 cut(s) 34, 373, 546
NlaIV GGNNCC 2 cut(s) 273, 429
NsiI ATGCAT 1 cut(s) 341
PagI TCATGA 1 cut(s) 30
PaqCI CACCTGC 1 cut(s) 494
PceI AGGCCT 1 cut(s) 364
PctI GAATGC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 551
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 2 cut(s) 130, 157
PpsI GAGTC 2 cut(s) 130, 157
PshAI GACNNNNGTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 273, 429
PstI CTGCAG 1 cut(s) 379
PsuI RGATCY 3 cut(s) 271, 427, 577
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 2 cut(s) 321, 458
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 4 cut(s) 80, 271, 427, 577
SchI GAGTC 2 cut(s) 131, 158
ScrFI CCNGG 1 cut(s) 219
SetI ASST 8 cut(s) 267, 281, 331, 355, 458, 466, 508, 521
SfaNI GCATC 2 cut(s) 36, 348
SfcI CTRYAG 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 1 cut(s) 416
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 2 cut(s) 101, 308
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 275
TaqI TCGA 1 cut(s) 411
TasI AATT 1 cut(s) 416
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 2 cut(s) 321, 458
Tru9I TTAA 2 cut(s) 321, 458
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 2 cut(s) 49, 429
XmnI GAANNNNTTC 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.