Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

27958870 .. 27964732

Gene Structure 5863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31309

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

ATGTTCTCAGGAACTGTTCCTCCTGAGCTTGGAAACTTGGTTAACTTGCAGAAGCTTATTCTTAGTGCAAACAATCTCACAGGAGAACTGCCGGTGGCTCTTATGAATCTGACTAAGTTAACAGAACTGAGGATTAGCAGCAACAACTTCACTGGAAGAATGCCCGACTTTCAAGAAAGTTGGAATCAACTTCAGAAATTAGAGATCCAAGCTAGTGGTCTACAAGGCCCCATTCCATCTAGCATTTCTGTCTTGAGTAATTTAACAGAACTAAGGATCAGCGACTTAAATGGAGGGGGTTCAGTATTTCCATACTTGAGCCATATTACAAGTTTGCAAAGATTGAGCTGTCACTTATCTGGACCTATTCCTTCTTTTTTATCAGCACTGTCACAGTTGAATACATTAGATCTAAGCTTCAACAGATTGGAGGGGAGCATTCCTGATTTGGCAGATCTGACAGATTTGCAGTACTTGTATCTAACAAGCAACTTGCTTACTGGATCTATTCCAGACTGGATCAAGAGCAGAGATAATCTCTACGTGATAGATGTTTCTTACAATGATTTTTCTGAGAGCTCTGAGTCACCTTATTGTACAGAAAACCTAAATGTGTTCAAAAGCTTTTCTGCACGTGATAACTCATTATATGCAGAGTGCCTGAATAGCTCTCCATGTCCAAAAGATCAGTACTCATTGCATATCAATTGTGGTGGTAAAGCAACCACCATTGGAGGAATCAACTTCGAAGCGGATCAAGACCCAGGAGGTGCAGCACATTTCGTTCCTACAGGGCATAGCTGGGAATTCAGTAGCACTGGACATTTCTGGAATACTGGCGTCACCTCTAATGACTGTATAGCAAATAATGTTTCTATACTCGAAATGGACAACTCTGAGTTGTACACAAATGCACGCATCTCTCCTCTTTCTCTTACGTATTATGGACGCTGCTTTGGCAGTGGAAATTATACTGTGAAGCTTTACTTTTCAGAGATTATAATCAGAGGCAATAGATCTTTTTTGAGTCTTGGAAGACGGATCTTCGATGTTTATATTCAGGAGAAGCTAGTGTTGAAGGATTTCAACATTGAAAAGGCTGCCCAAGGGGTTGATAAGCCATTCATCTGGGAATTTAAAGCAGTTGAGGTTAAGAACAAAACTTTAGAGATCCGATTTCATTGGTCTGGGAAGGGGACAACAGCTTCCCCGAATAGAGGAGTATATGGTCCCCTTATATCAGCTATCTCTGTAGAGTTTGAGTCTGATGATGATAGCAAAAGGAAGATATTTGTGGTTGCAGCTTCAGCTGGAGGTTCGCTTTTGTGTCTTGCTTTCTTAATCTTAGGCATTCTTTGGTGGAAAGGCTGTCTGGATAGCATGACATCAAGGGGAAAAGCTCATAGAGGACTGGATGTGCAAACGGGTTTTTTCACCTTCAAGCAAATTCAAGCTGCCACTAACAACTTTGCTCTGGAAAACAAAATTGGGGAAGGTGGTTTTGGGTCTGTCTACAAGGGTGTATTATTGGATGGTACAATAGTTGCGGTTAAACAACTATCTTCAAAATCAAAGCAGGGAAATCGTGAATTCGTGAATGAAATAGGCTTGATTTCTAGTTTGCAACATCCAAATCTTGTTAGATTGTATGGATCCTGTATTGAAGCAAATGAACTACTGTTGGTTTATGAATACATGGAAAACAATAGCCTTGCACATGCTTTGTTTGGTCCAGAGGAAGGTCAAGTAAGATTGGACTGGCCTACAAGGCAGGGAATATGTATAGGCATAGCAAAAGGTCTGGCTTTTTTGCATGAGGAATCAGCACTTAAGGTTGTGCATAGGGACATCAAAACAACGAATGTGCTATTGGACCAAGACCTTAATGCTAAGATCTCGGATTTTGGTCTGGCCAAGCTTCACGAAGAAGAGAACACCCACATTAGCACCAGAGTTGCTGGAACCATAGGATACATGGCGCCAGAATATGCACTATGGGGTTATTTAACCTTCAAAGCAGATGTCTTCAGTTTTGGTGTTGTTGCTTTAGAAATAGTTGCCGGAAAAAACAACATGAAATTTCGACCAAATGAGAATTTTGTAGGCCTTGTGGATTGGGCTCTTGTTTTACAACAAAAAGAGAGTTTAGTGGAACTGGTGGATCCAAGGTTAGGATTGGATTTCAGTAACGAAGAGGCGGTTAGAATGGCCAAAGTAGCTCTGCTGTGCATCAATCCAGCAGCGGCACTTAGGCCTACCATGTCTGCAGTCGTGAGTATGCTTGAAGGGCGAACCCCTGTCGATGAAATGATTATGGATCCAAGTATATATAGTGAAGAAATGAGGTTTACAGCCTTGAGAAATCCGTTTGAGCAGATTGCAGAAGAGAGTGCAGGTGGAACAAAGACCTTGATACATTCATCAGATGCATCATGGAATGGTTCTTCTGCTCCTACAACATCTTCAGATCTCTATAAAGTCAGTCCTAGTTGTGAGGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

834

Amino Acids

91.81

Weight (kDa)

5.26

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	6 - 187	4.4e-11	Leucine-rich repeat region
LRR_4	PF12799	132 - 166	6.6e-06	Leucine Rich repeats (2 copies)
Malectin	PF11721	232 - 416	5.6e-36	Malectin domain
Pkinase	PF00069	491 - 693	2.2e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	492 - 760	1.8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1001
AarI	CACCTGC	1 cut(s)	2384
Acc36I	ACCTGC	1 cut(s)	2384
AccB1I	GGYRCC	1 cut(s)	1978
AccI	GTMKAC	2 cut(s)	220, 1512
AciI	CCGC	4 cut(s)	752, 1547, 2198, 2243
AcoI	YGGCCR	2 cut(s)	1911, 2208
AcsI	RAATTY	6 cut(s)	806, 1133, 1446, 1589, 2078, 2095
AcuI	CTGAAG	4 cut(s)	176, 1290, 2011, 2448
AcvI	CACGTG	1 cut(s)	635
AcyI	GRCGYC	2 cut(s)	840, 1979
AfaI	GTAC	5 cut(s)	473, 598, 692, 905, 1537
AfiI	CCNNNNNNNGG	4 cut(s)	29, 1217, 1739, 2171
AflII	CTTAAG	1 cut(s)	1829
AjnI	CCWGG	1 cut(s)	763
AjuI	GAANNNNNNNTTGG	6 cut(s)	1470, 1485, 1502, 1517, 1853, 1885
AloI	GAACNNNNNNTCC	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	6 cut(s)	226, 1760, 1911, 2104, 2208, 2252
ApeKI	GCWGC	7 cut(s)	138, 773, 951, 1100, 1301, 1454, 2240
ApoI	RAATTY	6 cut(s)	806, 1133, 1446, 1589, 2078, 2095
ArsI	GACNNNNNNTTYG	2 cut(s)	2007, 2039
Asp700I	GAANNNNTTC	1 cut(s)	1082
AspLEI	GCGC	1 cut(s)	1981
AspS9I	GGNCC	5 cut(s)	227, 362, 1229, 1730, 1873
AsuHPI	GGTGA	3 cut(s)	579, 835, 1426
AsuII	TTCGAA	1 cut(s)	747
AvaII	GGWCC	4 cut(s)	362, 1229, 1730, 1873
BaeI	ACNNNNGTAYC	2 cut(s)	1527, 1560
BalI	TGGCCA	2 cut(s)	1913, 2210
BamHI	GGATCC	3 cut(s)	1652, 2161, 2317
BanI	GGYRCC	1 cut(s)	1978
BanII	GRGCYC	2 cut(s)	581, 2122
BbrPI	CACGTG	1 cut(s)	635
BbsI	GAAGAC	2 cut(s)	1042, 2017
Bbv12I	GWGCWC	1 cut(s)	581
BbvI	GCAGC	7 cut(s)	150, 785, 938, 1087, 1313, 1441, 2252
BccI	CCATC	2 cut(s)	244, 1526
BcgI	CGANNNNNNTGC	2 cut(s)	1565, 1599
BciT130I	CCWGG	1 cut(s)	765
BciVI	GTATCC	1 cut(s)	1964
BfaI	CTAG	5 cut(s)	213, 240, 1070, 1617, 2487
BfmI	CTRYAG	3 cut(s)	789, 1251, 2265
BfoI	RGCGCY	1 cut(s)	1982
BfrI	CTTAAG	1 cut(s)	1829
BfuAI	ACCTGC	1 cut(s)	2384
BfuI	GTATCC	1 cut(s)	1964
BglI	GCCNNNNNGGC	1 cut(s)	1768
BglII	AGATCT	5 cut(s)	409, 454, 1016, 1893, 2467
BisI	GCNGC	8 cut(s)	139, 774, 952, 1101, 1302, 1455, 2241, 2244
BlsI	GCNGC	8 cut(s)	140, 775, 953, 1102, 1303, 1456, 2242, 2245
BmcAI	AGTACT	2 cut(s)	473, 692
Bme1390I	CCNGG	1 cut(s)	765
Bme18I	GGWCC	4 cut(s)	362, 1229, 1730, 1873
BmgT120I	GGNCC	5 cut(s)	227, 362, 1229, 1730, 1873
BmiI	GGNNCC	7 cut(s)	229, 1231, 1654, 1963, 1980, 2163, 2319
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	4 cut(s)	927, 2238, 2416, 2438
BpiI	GAAGAC	2 cut(s)	1042, 2017
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
BpmI	CTGGAG	1 cut(s)	1332
Bpu10I	CCTNAGC	1 cut(s)	24
Bpu14I	TTCGAA	1 cut(s)	747
BpuEI	CTTGAG	3 cut(s)	274, 337, 2377
BsaAI	YACGTR	3 cut(s)	544, 635, 939
BsaBI	GATNNNNATC	1 cut(s)	1001
BsaHI	GRCGYC	2 cut(s)	840, 1979
BsaJI	CCNNGG	3 cut(s)	763, 1105, 2165
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 1217, 1739, 2171
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	8 cut(s)	157, 505, 521, 823, 841, 1416, 1763, 2160
Bse3DI	GCAATG	1 cut(s)	695
Bse8I	GATNNNNATC	1 cut(s)	1001
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	3 cut(s)	763, 1105, 2165
BseGI	GGATG	3 cut(s)	1420, 1537, 1627
BseJI	GATNNNNATC	1 cut(s)	1001
BseLI	CCNNNNNNNGG	4 cut(s)	29, 1217, 1739, 2171
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	6 cut(s)	15, 21, 119, 564, 573, 888
BseNI	ACTGG	8 cut(s)	157, 505, 521, 823, 841, 1416, 1763, 2160
BseRI	GAGGAG	2 cut(s)	915, 1233
BseXI	GCAGC	7 cut(s)	150, 785, 938, 1087, 1313, 1441, 2252
BseYI	CCCAGC	1 cut(s)	801
BsgI	GTGCAG	3 cut(s)	615, 792, 2412
BshFI	GGCC	6 cut(s)	228, 1762, 1913, 2106, 2210, 2254
BshNI	GGYRCC	1 cut(s)	1978
BsiHKAI	GWGCWC	1 cut(s)	581
BsiSI	CCGG	2 cut(s)	92, 2061
BslFI	GGGAC	3 cut(s)	1210, 1215, 1859
BslI	CCNNNNNNNGG	4 cut(s)	29, 1217, 1739, 2171
BsmFI	GGGAC	3 cut(s)	1210, 1215, 1859
BsmI	GAATGC	3 cut(s)	165, 438, 1350
BsnI	GGCC	6 cut(s)	228, 1762, 1913, 2106, 2210, 2254
Bsp119I	TTCGAA	1 cut(s)	747
Bsp1286I	GDGCHC	2 cut(s)	581, 2122
Bsp1407I	TGTACA	2 cut(s)	596, 903
BspACI	CCGC	4 cut(s)	752, 1547, 2198, 2243
BspANI	GGCC	6 cut(s)	228, 1762, 1913, 2106, 2210, 2254
BspCNI	CTCAG	6 cut(s)	16, 20, 120, 565, 574, 889
BspLI	GGNNCC	7 cut(s)	229, 1231, 1654, 1963, 1980, 2163, 2319
BspMAI	CTGCAG	1 cut(s)	2269
BspMI	ACCTGC	1 cut(s)	2384
BspT104I	TTCGAA	1 cut(s)	747
BspT107I	GGYRCC	1 cut(s)	1978
BspTI	CTTAAG	1 cut(s)	1829
BsrDI	GCAATG	1 cut(s)	695
BsrFI	RCCGGY	1 cut(s)	91
BsrGI	TGTACA	2 cut(s)	596, 903
BsrI	ACTGG	8 cut(s)	157, 505, 521, 823, 841, 1416, 1763, 2160
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	763, 1105, 2165
BssNI	GRCGYC	2 cut(s)	840, 1979
BssT1I	CCWWGG	2 cut(s)	1105, 2165
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	6 cut(s)	16, 390, 396, 857, 976, 1680
Bst6I	CTCTTC	3 cut(s)	1923, 2187, 2379
BstACI	GRCGYC	2 cut(s)	840, 1979
BstAFI	CTTAAG	1 cut(s)	1829
BstAUI	TGTACA	2 cut(s)	596, 903
BstBAI	YACGTR	3 cut(s)	544, 635, 939
BstBI	TTCGAA	1 cut(s)	747
BstC8I	GCNNGC	1 cut(s)	916
BstF5I	GGATG	3 cut(s)	1420, 1537, 1627
BstH2I	RGCGCY	1 cut(s)	1982
BstHHI	GCGC	1 cut(s)	1981
BstMWI	GCNNNNNNNGC	6 cut(s)	666, 957, 1307, 1768, 2216, 2287
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	1721
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	3 cut(s)	789, 1251, 2265
BstSNI	TACGTA	1 cut(s)	939
BstV1I	GCAGC	7 cut(s)	150, 785, 938, 1087, 1313, 1441, 2252
BstV2I	GAAGAC	2 cut(s)	1042, 2017
BstXI	CCANNNNNNTGG	2 cut(s)	215, 1128
BsuI	GTATCC	1 cut(s)	1964
BsuRI	GGCC	6 cut(s)	228, 1762, 1913, 2106, 2210, 2254
BtsCI	GGATG	3 cut(s)	1420, 1537, 1627
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	4 cut(s)	150, 386, 816, 967
BveI	ACCTGC	1 cut(s)	2384
Cac8I	GCNNGC	1 cut(s)	916
CaiI	CAGNNNCTG	1 cut(s)	14
CfoI	GCGC	1 cut(s)	1981
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	5 cut(s)	227, 362, 1229, 1730, 1873
CseI	GACGC	2 cut(s)	829, 957
Csp6I	GTAC	5 cut(s)	472, 597, 691, 904, 1536
CspCI	CAANNNNNGTGG	2 cut(s)	694, 729
CviAII	CATG	9 cut(s)	675, 1381, 1696, 1718, 1814, 1975, 2074, 2260, 2433
CviQI	GTAC	5 cut(s)	472, 597, 691, 904, 1536
DinI	GGCGCC	1 cut(s)	1980
DraI	TTTAAA	1 cut(s)	1138
EaeI	YGGCCR	2 cut(s)	1911, 2208
Eam1104I	CTCTTC	3 cut(s)	1923, 2187, 2379
EarI	CTCTTC	3 cut(s)	1923, 2187, 2379
Ecl136II	GAGCTC	1 cut(s)	579
Eco105I	TACGTA	1 cut(s)	939
Eco130I	CCWWGG	2 cut(s)	1105, 2165
Eco147I	AGGCCT	2 cut(s)	2106, 2254
Eco24I	GRGCYC	2 cut(s)	581, 2122
Eco47I	GGWCC	4 cut(s)	362, 1229, 1730, 1873
Eco53kI	GAGCTC	1 cut(s)	579
Eco57I	CTGAAG	4 cut(s)	176, 1290, 2011, 2448
Eco72I	CACGTG	1 cut(s)	635
EcoICRI	GAGCTC	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRI	GAATTC	2 cut(s)	806, 1589
EcoRII	CCWGG	1 cut(s)	763
EcoT14I	CCWWGG	2 cut(s)	1105, 2165
EcoT22I	ATGCAT	1 cut(s)	2431
EcoT38I	GRGCYC	2 cut(s)	581, 2122
EgeI	GGCGCC	1 cut(s)	1980
EheI	GGCGCC	1 cut(s)	1980
ErhI	CCWWGG	2 cut(s)	1105, 2165
FaeI	CATG	9 cut(s)	678, 1384, 1699, 1721, 1817, 1978, 2077, 2263, 2436
FalI	AAGNNNNNCTT	2 cut(s)	971, 1003
FaqI	GGGAC	3 cut(s)	1210, 1215, 1859
FatI	CATG	9 cut(s)	674, 1380, 1695, 1717, 1813, 1974, 2073, 2259, 2432
FblI	GTMKAC	2 cut(s)	220, 1512
Fnu4HI	GCNGC	8 cut(s)	139, 774, 952, 1101, 1302, 1455, 2241, 2244
FokI	GGATG	3 cut(s)	1427, 1544, 1614
FriOI	GRGCYC	2 cut(s)	581, 2122
Fsp4HI	GCNGC	8 cut(s)	139, 774, 952, 1101, 1302, 1455, 2241, 2244
FspBI	CTAG	5 cut(s)	213, 240, 1070, 1617, 2487
GlaI	GCGC	1 cut(s)	1980
GluI	GCNGC	8 cut(s)	139, 774, 952, 1101, 1302, 1455, 2241, 2244
GsaI	CCCAGC	1 cut(s)	805
GsuI	CTGGAG	1 cut(s)	1332
HaeII	RGCGCY	1 cut(s)	1982
HaeIII	GGCC	6 cut(s)	228, 1762, 1913, 2106, 2210, 2254
HapII	CCGG	2 cut(s)	92, 2061
HgaI	GACGC	2 cut(s)	829, 957
HhaI	GCGC	1 cut(s)	1981
Hin1I	GRCGYC	2 cut(s)	840, 1979
Hin1II	CATG	9 cut(s)	678, 1384, 1699, 1721, 1817, 1978, 2077, 2263, 2436
Hin6I	GCGC	1 cut(s)	1979
HinP1I	GCGC	1 cut(s)	1979
HincII	GTYRAC	2 cut(s)	43, 120
HindII	GTYRAC	2 cut(s)	43, 120
HindIII	AAGCTT	5 cut(s)	53, 415, 622, 980, 1916
HinfI	GANTC	7 cut(s)	106, 184, 584, 738, 1027, 1262, 1820
HpaI	GTTAAC	2 cut(s)	43, 120
HpaII	CCGG	2 cut(s)	92, 2061
HphI	GGTGA	3 cut(s)	579, 835, 1426
Hpy166II	GTNNAC	6 cut(s)	43, 120, 221, 906, 1513, 2349
Hpy8I	GTNNAC	6 cut(s)	43, 120, 221, 906, 1513, 2349
HpyAV	CCTTC	8 cut(s)	381, 1072, 1186, 1447, 1487, 1733, 2020, 2279
HpyCH4III	ACNGT	6 cut(s)	16, 390, 396, 857, 976, 1680
HpyCH4IV	ACGT	3 cut(s)	543, 634, 938
HpyF10VI	GCNNNNNNNGC	6 cut(s)	666, 957, 1307, 1768, 2216, 2287
HpySE526I	ACGT	3 cut(s)	543, 634, 938
Hsp92I	GRCGYC	2 cut(s)	840, 1979
Hsp92II	CATG	9 cut(s)	678, 1384, 1699, 1721, 1817, 1978, 2077, 2263, 2436
HspAI	GCGC	1 cut(s)	1979
KasI	GGCGCC	1 cut(s)	1978
KspAI	GTTAAC	2 cut(s)	43, 120
LmnI	GCTCC	2 cut(s)	435, 2455
Lsp1109I	GCAGC	7 cut(s)	150, 785, 938, 1087, 1313, 1441, 2252
LweI	GCATC	4 cut(s)	927, 2238, 2416, 2438
MaeI	CTAG	5 cut(s)	213, 240, 1070, 1617, 2487
MaeII	ACGT	3 cut(s)	543, 634, 938
MaeIII	GTNAC	5 cut(s)	350, 390, 585, 841, 2186
MfeI	CAATTG	1 cut(s)	706
MhlI	GDGCHC	2 cut(s)	581, 2122
MlsI	TGGCCA	2 cut(s)	1913, 2210
MluNI	TGGCCA	2 cut(s)	1913, 2210
Mly113I	GGCGCC	1 cut(s)	1979
MlyI	GAGTC	3 cut(s)	593, 1036, 1271
MmeI	TCCRAC	1 cut(s)	161
Mox20I	TGGCCA	2 cut(s)	1913, 2210
Mph1103I	ATGCAT	1 cut(s)	2431
MroXI	GAANNNNTTC	1 cut(s)	1082
MscI	TGGCCA	2 cut(s)	1913, 2210
Msp20I	TGGCCA	2 cut(s)	1913, 2210
MspA1I	CMGCKG	2 cut(s)	1310, 2243
MspCI	CTTAAG	1 cut(s)	1829
MspI	CCGG	2 cut(s)	92, 2061
MspR9I	CCNGG	1 cut(s)	765
MunI	CAATTG	1 cut(s)	706
Mva1269I	GAATGC	3 cut(s)	165, 438, 1350
MvaI	CCWGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	6 cut(s)	666, 957, 1307, 1768, 2216, 2287
NarI	GGCGCC	1 cut(s)	1979
NlaIII	CATG	9 cut(s)	678, 1384, 1699, 1721, 1817, 1978, 2077, 2263, 2436
NlaIV	GGNNCC	7 cut(s)	229, 1231, 1654, 1963, 1980, 2163, 2319
NmuCI	GTSAC	4 cut(s)	350, 390, 585, 841
NsiI	ATGCAT	1 cut(s)	2431
NspI	RCATGY	1 cut(s)	1721
NspV	TTCGAA	1 cut(s)	747
PaqCI	CACCTGC	1 cut(s)	2384
PceI	AGGCCT	2 cut(s)	2106, 2254
PctI	GAATGC	3 cut(s)	165, 438, 1350
PdmI	GAANNNNTTC	1 cut(s)	1082
PfeI	GAWTC	4 cut(s)	106, 184, 738, 1820
PkrI	GCNGC	8 cut(s)	140, 775, 953, 1102, 1303, 1456, 2242, 2245
PleI	GAGTC	3 cut(s)	592, 1035, 1270
PluTI	GGCGCC	1 cut(s)	1982
PmaCI	CACGTG	1 cut(s)	635
PmlI	CACGTG	1 cut(s)	635
PpsI	GAGTC	3 cut(s)	592, 1035, 1270
Ppu21I	YACGTR	3 cut(s)	544, 635, 939
PsiI	TTATAA	1 cut(s)	1001
Psp124BI	GAGCTC	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	763
PspCI	CACGTG	1 cut(s)	635
PspFI	CCCAGC	1 cut(s)	801
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	7 cut(s)	229, 1231, 1654, 1963, 1980, 2163, 2319
PspPI	GGNCC	5 cut(s)	227, 362, 1229, 1730, 1873
PstI	CTGCAG	1 cut(s)	2269
PstNI	CAGNNNCTG	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	1310
RsaI	GTAC	5 cut(s)	473, 598, 692, 905, 1537
RsaNI	GTAC	5 cut(s)	472, 597, 691, 904, 1536
SacI	GAGCTC	1 cut(s)	581
SatI	GCNGC	8 cut(s)	139, 774, 952, 1101, 1302, 1455, 2241, 2244
Sau96I	GGNCC	5 cut(s)	227, 362, 1229, 1730, 1873
ScaI	AGTACT	2 cut(s)	473, 692
SchI	GAGTC	3 cut(s)	593, 1036, 1271
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	2 cut(s)	581, 2122
SfaNI	GCATC	4 cut(s)	927, 2238, 2416, 2438
SfcI	CTRYAG	3 cut(s)	789, 1251, 2265
SfoI	GGCGCC	1 cut(s)	1980
SfuI	TTCGAA	1 cut(s)	747
SinI	GGWCC	4 cut(s)	362, 1229, 1730, 1873
SmlI	CTYRAG	4 cut(s)	253, 316, 1829, 2356
SmoI	CTYRAG	4 cut(s)	253, 316, 1829, 2356
SnaBI	TACGTA	1 cut(s)	939
SseBI	AGGCCT	2 cut(s)	2106, 2254
SsiI	CCGC	4 cut(s)	752, 1547, 2198, 2243
SspDI	GGCGCC	1 cut(s)	1978
SspMI	CTAG	5 cut(s)	213, 240, 1070, 1617, 2487
SstI	GAGCTC	1 cut(s)	581
StuI	AGGCCT	2 cut(s)	2106, 2254
StyD4I	CCNGG	1 cut(s)	763
StyI	CCWWGG	2 cut(s)	1105, 2165
TaaI	ACNGT	6 cut(s)	16, 390, 396, 857, 976, 1680
TaiI	ACGT	3 cut(s)	546, 637, 941
TaqI	TCGA	5 cut(s)	747, 882, 1047, 2083, 2301
TatI	WGTACW	4 cut(s)	471, 596, 690, 903
TauI	GCSGC	1 cut(s)	2246
TfiI	GAWTC	4 cut(s)	106, 184, 738, 1820
TscAI	CASTG	4 cut(s)	157, 393, 823, 967
TseFI	GTSAC	4 cut(s)	350, 390, 585, 841
TseI	GCWGC	7 cut(s)	138, 773, 951, 1100, 1301, 1454, 2240
Tsp45I	GTSAC	4 cut(s)	350, 390, 585, 841
TspDTI	ATGAA	9 cut(s)	119, 1114, 1169, 1614, 1686, 1704, 2090, 2319, 2409
TspGWI	ACGGA	2 cut(s)	1054, 2355
TspRI	CASTG	4 cut(s)	157, 393, 823, 967
Vha464I	CTTAAG	1 cut(s)	1829
VpaK11BI	GGWCC	4 cut(s)	362, 1229, 1730, 1873
XapI	RAATTY	6 cut(s)	806, 1133, 1446, 1589, 2078, 2095
XceI	RCATGY	1 cut(s)	1721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1972
XmiI	GTMKAC	2 cut(s)	220, 1512
XmnI	GAANNNNTTC	1 cut(s)	1082
XspI	CTAG	5 cut(s)	213, 240, 1070, 1617, 2487
ZrmI	AGTACT	2 cut(s)	473, 692
Zsp2I	ATGCAT	1 cut(s)	2431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.