Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003368.1

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

107611 .. 109739

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003368.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggggtttgtgatttcgaactctaggattggtttggtctttgcttttgggtttctggtgctgatttgcttcactgggtttgggtctcatgcccaactcattcctttacaagaagtgaaaactcttgaaacgatatcccagaaactccagaattctttttggaacaacatcagccaaagttcttgccaagatggtggatcaagctttaataagaatatcacggccaattttctaagcaatgtcacttgcgactgttccttcgcaaacaacacttgccatgtcacaaacatgtacgatatcattactttgaagtttgattcctttgaattccactgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

112

Amino Acids

12.47

Weight (kDa)

5.78

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	151, 326
AfaI	GTAC	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	128, 310, 326
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	222
ApoI	RAATTY	2 cut(s)	151, 326
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AsuII	TTCGAA	1 cut(s)	17
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	233
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	292
BstXI	CCANNNNNNTGG	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	72, 331
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	89, 278, 289
CviJI	RGCY	3 cut(s)	174, 204, 224
CviKI_1	RGCY	3 cut(s)	174, 204, 224
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	2 cut(s)	135, 298
EcoRI	GAATTC	2 cut(s)	151, 326
EcoRV	GATATC	2 cut(s)	135, 298
FaeI	CATG	3 cut(s)	92, 281, 292
FaiI	YATR	3 cut(s)	90, 279, 290
FatI	CATG	3 cut(s)	88, 277, 288
FspBI	CTAG	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	92, 281, 292
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	1 cut(s)	317
Hpy188III	TCNNGA	2 cut(s)	125, 148
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	92, 281, 292
Kzo9I	GATC	1 cut(s)	197
LpnPI	CCDG	4 cut(s)	41, 60, 152, 161
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	241, 280
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MluCI	AATT	3 cut(s)	151, 226, 326
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	287
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	3 cut(s)	92, 281, 292
NmuCI	GTSAC	2 cut(s)	241, 280
NspI	RCATGY	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	17
PciI	ACATGT	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	317
PscI	ACATGT	1 cut(s)	288
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	197
SetI	ASST	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	151, 226, 326
SspMI	CTAG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	151, 226, 326
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	79, 338
TseFI	GTSAC	2 cut(s)	241, 280
Tsp45I	GTSAC	2 cut(s)	241, 280
TspRI	CASTG	2 cut(s)	79, 338
XapI	RAATTY	2 cut(s)	151, 326
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.