Rh5CG103100

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
8270467 .. 8280424
9958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG103100.1

Sequence Viewer

Length: 630 bp
ATGGCATTTAGCGTTTTTCCGAAAAGCATCATGACTATGGTCATGATGGTTCTCTGCTTCATCTGCATAAACTCAGTCAGATCAGTTGAAGCACAATCCCCGCGCCTTCCTGTTCAAGAAGAAGTGACAGAACAAGTTGAAGGTTCAACCCTTCAGAGAACTGCCGGAGCTATTAATAGTCTTCAGAGATGCGAAGATAGTCTTCAGAGAACTGCTGGTCCAATCTTCAAGCTTCAACCCTTCAACCCACACTCCTACAGAGCTTCAACCTTCAAGGCTTTCAATTCAGAACATACCCATCAAGCAACAAACAGAGATGCGAAGATAGTCTTCAGAGAACTCGACCTTCAAGGCTTCAACCTTCAAGTCTTCAACCCACAGATGTGTCTGACACATAACGCCCTCACTGGGTCTATTCCAGAGTTATCTGCACCTCTTCCAGATTGGGTCAAGAGAAATCGCAATAACAGTAACTACTACATGGATATTTCTTACAATAAATTTCCTGAGAGCTCTGAGTTACCTTGTACAGAAAACCTGAACTTGTTCAAAAGCTTTTCTGCACAAGACATCTCATTATCTGGAGGGTGCCTGAAGAGATATCCATGTCGAGAAGGTAACAATATATGA

Protein Analysis

209

Amino Acids

23.64

Weight (kDa)

7.59

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 588
AccII CGCG 1 cut(s) 103
AciI CCGC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 500
AcuI CTGAAG 5 cut(s) 137, 167, 188, 316, 614
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 1 cut(s) 408
AleI CACNNNNGTG 1 cut(s) 382
AloI GAACNNNNNNTCC 2 cut(s) 202, 234
AluBI AGCT 5 cut(s) 170, 232, 263, 513, 555
AluI AGCT 5 cut(s) 170, 232, 263, 513, 555
Alw21I GWGCWC 1 cut(s) 515
ApoI RAATTY 1 cut(s) 500
AseI ATTAAT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 218
AvaII GGWCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 588
BanII GRGCYC 1 cut(s) 515
BbsI GAAGAC 4 cut(s) 173, 194, 322, 361
Bbv12I GWGCWC 1 cut(s) 515
BccI CCATC 2 cut(s) 40, 306
BfmI CTRYAG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 590
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 3 cut(s) 36, 179, 307
BmuI ACTGGG 1 cut(s) 417
BoxI GACNNNNGTC 1 cut(s) 38
BpiI GAAGAC 4 cut(s) 173, 194, 322, 361
BpmI CTGGAG 1 cut(s) 603
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse1I ACTGG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 408
BseMII CTCAG 3 cut(s) 87, 498, 507
BseNI ACTGG 1 cut(s) 412
BsgI GTGCAG 2 cut(s) 414, 546
Bsh1236I CGCG 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 515
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 515
Bsp1407I TGTACA 1 cut(s) 527
Bsp143I GATC 1 cut(s) 80
BspACI CCGC 1 cut(s) 101
BspCNI CTCAG 3 cut(s) 86, 499, 508
BspFNI CGCG 1 cut(s) 103
BspHI TCATGA 2 cut(s) 30, 42
BspLI GGNNCC 1 cut(s) 590
BspT107I GGYRCC 1 cut(s) 588
BsrGI TGTACA 1 cut(s) 527
BsrI ACTGG 1 cut(s) 412
BssMI GATC 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 2 cut(s) 441, 590
BstAUI TGTACA 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 73, 507, 516
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstPAI GACNNNNGTC 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 1 cut(s) 103
BstV2I GAAGAC 4 cut(s) 173, 194, 322, 361
BtsIMutI CAGTG 1 cut(s) 405
CciI TCATGA 2 cut(s) 30, 42
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 528
CviAII CATG 4 cut(s) 31, 43, 481, 606
CviJI RGCY 7 cut(s) 170, 232, 263, 278, 354, 513, 555
CviKI_1 RGCY 7 cut(s) 170, 232, 263, 278, 354, 513, 555
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 3 cut(s) 73, 507, 516
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 441, 590
EarI CTCTTC 2 cut(s) 441, 590
Ecl136II GAGCTC 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 515
Eco32I GATATC 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 513
Eco57I CTGAAG 5 cut(s) 137, 167, 188, 316, 614
EcoICRI GAGCTC 1 cut(s) 513
EcoRV GATATC 1 cut(s) 602
EcoT38I GRGCYC 1 cut(s) 515
FaeI CATG 4 cut(s) 34, 46, 484, 609
FalI AAGNNNNNCTT 4 cut(s) 186, 218, 314, 346
FatI CATG 4 cut(s) 30, 42, 480, 605
FauI CCCGC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 515
GlaI GCGC 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 603
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 105
Hin1II CATG 4 cut(s) 34, 46, 484, 609
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HindIII AAGCTT 2 cut(s) 230, 553
HpaII CCGG 1 cut(s) 165
Hpy188I TCNGA 9 cut(s) 21, 80, 156, 186, 207, 289, 335, 390, 517
Hpy188III TCNNGA 9 cut(s) 31, 43, 116, 419, 440, 451, 506, 582, 611
HpyAV CCTTC 8 cut(s) 116, 134, 161, 250, 280, 356, 371, 608
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4V TGCA 3 cut(s) 66, 431, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 3 cut(s) 73, 507, 516
Hsp92II CATG 4 cut(s) 34, 46, 484, 609
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 167
LweI GCATC 3 cut(s) 36, 179, 307
MaeIII GTNAC 4 cut(s) 124, 470, 519, 617
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 515
MluCI AATT 2 cut(s) 283, 500
MnlI CCTC 3 cut(s) 413, 444, 578
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 2 cut(s) 35, 382
MspI CCGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 1 cut(s) 80
NlaIII CATG 4 cut(s) 34, 46, 484, 609
NlaIV GGNNCC 1 cut(s) 590
NmuCI GTSAC 1 cut(s) 124
OliI CACNNNNGTG 1 cut(s) 382
PagI TCATGA 2 cut(s) 30, 42
PdmI GAANNNNTTC 1 cut(s) 545
PshAI GACNNNNGTC 1 cut(s) 38
PshBI ATTAAT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 590
PspPI GGNCC 1 cut(s) 218
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
RseI CAYNNNNRTG 2 cut(s) 35, 382
SacI GAGCTC 1 cut(s) 515
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 515
SfaNI GCATC 3 cut(s) 36, 179, 307
SfcI CTRYAG 1 cut(s) 256
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 35, 382
Sse9I AATT 2 cut(s) 283, 500
SsiI CCGC 1 cut(s) 101
SstI GAGCTC 1 cut(s) 515
TaaI ACNGT 1 cut(s) 470
TaqI TCGA 2 cut(s) 342, 610
TasI AATT 2 cut(s) 283, 500
TatI WGTACW 1 cut(s) 527
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 218
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.