Rh5BG089400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000134
Physical Location & Seq
Forward (+)
7777240 .. 7778036
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG089400.1

Sequence Viewer

Length: 309 bp
ATGGCATTTAGCGTTTTTCCAAAAAGCATCATGACTATGGTCATAATGGTTCTCTGCTTCATCTGCATAAACTCAGTCAGATCAGTTGAAGCACAATCCCCGCGCCTTCCTGTTCAAGAAAAGGTAACCGGGTTAACACTTGTGCGGCCACCATCAAAGAACACGGTGAGCCTCCATGAGTCCACCAGTACGCTGACAAGCAAAAGGGAAGAATACCGTTCCAATGCGACCATCGACGGAAGCTTGCGGGTTCTTCAAGTTTTGGGCTTTTCCATCGCGGGCTTTGGTGGTGGTTCAACGGGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.96

Weight (kDa)

9.59

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 103, 278
AciI CCGC 4 cut(s) 101, 145, 247, 278
AcoI YGGCCR 1 cut(s) 146
AfaI GTAC 1 cut(s) 190
AgsI TTSAA 4 cut(s) 89, 116, 257, 297
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
AoxI GGCC 2 cut(s) 146, 301
ApaI GGGCCC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 301, 302
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 305
BccI CCATC 3 cut(s) 160, 239, 281
BcnI CCSGG 1 cut(s) 130
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 301, 302
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 36
BoxI GACNNNNGTC 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 103, 278
BshFI GGCC 2 cut(s) 148, 303
BsiSI CCGG 1 cut(s) 129
BsnI GGCC 2 cut(s) 148, 303
Bsp120I GGGCCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 80
BspACI CCGC 4 cut(s) 101, 145, 247, 278
BspANI GGCC 2 cut(s) 148, 303
BspCNI CTCAG 1 cut(s) 86
BspFNI CGCG 2 cut(s) 103, 278
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 186
BssMI GATC 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 166, 218
BstC8I GCNNGC 2 cut(s) 245, 280
BstDEI CTNAG 1 cut(s) 73
BstEII GGTNACC 1 cut(s) 124
BstFNI CGCG 2 cut(s) 103, 278
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstPAI GACNNNNGTC 1 cut(s) 38
BstPI GGTNACC 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 2 cut(s) 103, 278
BsuRI GGCC 2 cut(s) 148, 303
BtgZI GCGATG 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 245, 280
CciI TCATGA 1 cut(s) 30
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 301, 302
Csp6I GTAC 1 cut(s) 189
CviAII CATG 2 cut(s) 31, 176
CviJI RGCY 6 cut(s) 148, 171, 243, 267, 282, 303
CviKI_1 RGCY 6 cut(s) 148, 171, 243, 267, 282, 303
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 73
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 305
Eco91I GGTNACC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 305
FaeI CATG 2 cut(s) 34, 179
FaiI YATR 5 cut(s) 32, 38, 44, 68, 177
FatI CATG 2 cut(s) 30, 175
FauI CCCGC 3 cut(s) 108, 240, 271
Fnu4HI GCNGC 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 146
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 146
HaeIII GGCC 2 cut(s) 148, 303
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 34, 179
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 241
HinfI GANTC 1 cut(s) 179
HpaI GTTAAC 1 cut(s) 135
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 135, 183
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 31, 116
Hpy8I GTNNAC 2 cut(s) 135, 183
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 2 cut(s) 166, 218
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 2 cut(s) 34, 179
HspAI GCGC 1 cut(s) 103
KspAI GTTAAC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 3 cut(s) 123, 142, 199
LweI GCATC 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 2 cut(s) 221, 245
MhlI GDGCHC 1 cut(s) 305
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 1 cut(s) 182
MseI TTAA 1 cut(s) 134
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 130
MvnI CGCG 2 cut(s) 103, 278
MwoI GCNNNNNNNGC 1 cut(s) 63
NciI CCSGG 1 cut(s) 130
NdeII GATC 1 cut(s) 80
NlaIII CATG 2 cut(s) 34, 179
NlaIV GGNNCC 1 cut(s) 303
PagI TCATGA 1 cut(s) 30
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PshAI GACNNNNGTC 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 303
PspOMI GGGCCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 301, 302
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 2 cut(s) 301, 302
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 305
SetI ASST 2 cut(s) 126, 245
SfaNI GCATC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 35
SsiI CCGC 4 cut(s) 101, 145, 247, 278
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 2 cut(s) 166, 218
TaqI TCGA 1 cut(s) 234
TauI GCSGC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.