RchiOBHm_Chr3g0460871

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
8945072 .. 8947179
2108 bp
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UTR
Exon/CDS
Intron
PRQ42736

Sequence Viewer

Length: 417 bp
ATGCAGGGAATACTACTGGATGGTACTATAATTGCAGTAAAGCAATTATCTGCAAAATCAAAGCAAGGAAATCGAGAATTTGTGAACGAAATAGGCATGATTTCTGGTTTACAGCATCCAAATGTCGTGAGATTGTATGGATGTTGTATTGAAGCAAATCAGTTACTTTTGGTATATGAATACATGGAGAACAATAGCCTTGCACATGATTTGTTTGAAAGGATCGGCTTTGGAATTTGGGCGAAGTTGCATATTACCGGCATGCATGTTGAAGGGAAGCAACGCGCGGGCATCATTTCTAGTGTATTACTGGACCAAGACCTTAACGCTAAGATCTCAGACTTTGGTCTGGCCAAGCTTGACGACGAAGAGAATACCCACATTAGCACCAGAGTTGCAGGAACTATGACATTATAA

Protein Analysis

138

Amino Acids

15.26

Weight (kDa)

5.67

Isoelectric Point (pI)

29.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 7 - 71 3.4e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 9 - 126 6e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 415
AccII CGCG 2 cut(s) 285, 287
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 2 cut(s) 77, 234
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 3 cut(s) 152, 218, 272
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
AlwI GGATC 1 cut(s) 230
AoxI GGCC 1 cut(s) 351
ApoI RAATTY 2 cut(s) 77, 234
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 313
AvaII GGWCC 1 cut(s) 313
BalI TGGCCA 1 cut(s) 353
BccI CCATC 1 cut(s) 14
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BfaI CTAG 1 cut(s) 300
BglII AGATCT 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmsI GCATC 2 cut(s) 124, 300
BoxI GACNNNNGTC 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 21, 315
BseGI GGATG 3 cut(s) 25, 115, 146
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 21, 315
Bsh1236I CGCG 2 cut(s) 285, 287
BshFI GGCC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 258
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 2 cut(s) 222, 333
BspACI CCGC 1 cut(s) 287
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 350
BspFNI CGCG 2 cut(s) 285, 287
BspPI GGATC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 2 cut(s) 21, 315
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 2 cut(s) 222, 333
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 263, 289
BstDEI CTNAG 2 cut(s) 330, 337
BstF5I GGATG 3 cut(s) 25, 115, 146
BstFNI CGCG 2 cut(s) 285, 287
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 2 cut(s) 225, 336
BstMBI GATC 2 cut(s) 222, 333
BstNSI RCATGY 2 cut(s) 265, 269
BstPAI GACNNNNGTC 1 cut(s) 345
BstUI CGCG 2 cut(s) 285, 287
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 3 cut(s) 25, 115, 146
Cac8I GCNNGC 2 cut(s) 263, 289
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 24
CviAII CATG 5 cut(s) 97, 184, 206, 262, 266
CviJI RGCY 4 cut(s) 198, 228, 353, 358
CviKI_1 RGCY 4 cut(s) 198, 228, 353, 358
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 330, 337
DpnI GATC 2 cut(s) 224, 335
DpnII GATC 2 cut(s) 222, 333
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 267
FaeI CATG 5 cut(s) 100, 187, 209, 265, 269
FatI CATG 5 cut(s) 96, 183, 205, 261, 265
FauI CCCGC 1 cut(s) 280
FokI GGATG 3 cut(s) 32, 102, 153
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 286
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 287
Hin1II CATG 5 cut(s) 100, 187, 209, 265, 269
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 356
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 85, 110
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 2 cut(s) 74, 127
Hpy8I GTNNAC 2 cut(s) 85, 110
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 1 cut(s) 266
HpyCH4V TGCA 7 cut(s) 4, 35, 53, 203, 250, 265, 398
HpyF3I CTNAG 2 cut(s) 330, 337
Hsp92II CATG 5 cut(s) 100, 187, 209, 265, 269
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 2 cut(s) 222, 333
LpnPI CCDG 7 cut(s) 2, 90, 271, 296, 335, 384, 403
LweI GCATC 2 cut(s) 124, 300
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 162
MalI GATC 2 cut(s) 224, 335
MboI GATC 2 cut(s) 222, 333
MboII GAAGA 1 cut(s) 380
MflI RGATCY 1 cut(s) 333
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 4 cut(s) 30, 44, 77, 234
MluNI TGGCCA 1 cut(s) 353
Mox20I TGGCCA 1 cut(s) 353
Mph1103I ATGCAT 1 cut(s) 267
MscI TGGCCA 1 cut(s) 353
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 353
MspI CCGG 1 cut(s) 258
MvnI CGCG 2 cut(s) 285, 287
NdeII GATC 2 cut(s) 222, 333
NlaIII CATG 5 cut(s) 100, 187, 209, 265, 269
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 2 cut(s) 265, 269
PaeI GCATGC 1 cut(s) 265
PshAI GACNNNNGTC 1 cut(s) 345
PsiI TTATAA 1 cut(s) 415
PspPI GGNCC 1 cut(s) 313
PsuI RGATCY 1 cut(s) 333
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 324
Sau3AI GATC 2 cut(s) 222, 333
Sau96I GGNCC 1 cut(s) 313
SetI ASST 2 cut(s) 324, 360
SfaNI GCATC 2 cut(s) 124, 300
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 120
SphI GCATGC 1 cut(s) 265
Sse9I AATT 4 cut(s) 30, 44, 77, 234
SsiI CCGC 1 cut(s) 287
SspMI CTAG 1 cut(s) 300
TaqI TCGA 1 cut(s) 73
TasI AATT 4 cut(s) 30, 44, 77, 234
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 2 cut(s) 77, 234
XceI RCATGY 2 cut(s) 265, 269
XspI CTAG 1 cut(s) 300
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.