Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

18574905 .. 18575462

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTCCAGTAGTGGTCTGCCAATCTCAAATTTTGCTTGTTTATCAACTAAAAAGGTTCACATTATTGATGTGATTTGCTTCAAGGAAGGTGCATGCTTTTGTGTTTGTGCTTCATTGATGGCTTTGATGGAGAAACTTGTATGGAAGGATTTTGACATCGTAAAGGAAGCACCAGGGGTTGATAAGGTAGTCATTAAGGTAACAAAGGCAGTTCAAGTTACAAACAAAACTCTAGAGATTCGGTTTCATTGGTCCGGGAAAGGCACAACAGCATCACCTAGTAGAGGAATCTATGGTCCCCTTATATCAGCCATTTCTATAGAGCACGGTAATCTTCTCGAATTTGCATACACACTTGGTCTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

122

Amino Acids

13.28

Weight (kDa)

8.63

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	43 - 105	2.9e-10	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	28, 341
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	2 cut(s)	82, 215
AjnI	CCWGG	1 cut(s)	172
Alw21I	GWGCWC	1 cut(s)	327
ApoI	RAATTY	2 cut(s)	28, 341
AspS9I	GGNCC	2 cut(s)	252, 296
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	267
AvaII	GGWCC	2 cut(s)	252, 296
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	2 cut(s)	112, 121
BciT130I	CCWGG	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	256
BfaI	CTAG	2 cut(s)	233, 279
BfmI	CTRYAG	1 cut(s)	318
Bme1390I	CCNGG	2 cut(s)	174, 256
Bme18I	GGWCC	2 cut(s)	252, 296
BmgT120I	GGNCC	2 cut(s)	252, 296
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	2 cut(s)	174, 256
BmsI	GCATC	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	94
BstENI	CCTNNNNNAGG	1 cut(s)	282
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	172, 254
BstSFI	CTRYAG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	252, 296
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	2 cut(s)	122, 311
CviKI_1	RGCY	2 cut(s)	122, 311
Eco47I	GGWCC	2 cut(s)	252, 296
EcoNI	CCTNNNNNAGG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	96
FaiI	YATR	6 cut(s)	94, 142, 294, 305, 320, 349
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	1 cut(s)	92
FspBI	CTAG	2 cut(s)	233, 279
HapII	CCGG	1 cut(s)	255
Hin1II	CATG	1 cut(s)	96
HinfI	GANTC	2 cut(s)	238, 288
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	233, 338
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	80, 139
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	2 cut(s)	92, 347
Hsp92II	CATG	1 cut(s)	96
LpnPI	CCDG	4 cut(s)	19, 159, 186, 268
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	2 cut(s)	233, 279
MaeIII	GTNAC	2 cut(s)	199, 217
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	2 cut(s)	28, 341
MnlI	CCTC	1 cut(s)	278
MseI	TTAA	1 cut(s)	195
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	174, 256
MvaI	CCWGG	1 cut(s)	174
NciI	CCSGG	1 cut(s)	256
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	96
PaeI	GCATGC	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	238, 288
PfoI	TCCNGGA	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	2 cut(s)	252, 296
SaqAI	TTAA	1 cut(s)	195
Sau96I	GGNCC	2 cut(s)	252, 296
ScrFI	CCNGG	2 cut(s)	174, 256
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	5 cut(s)	57, 91, 189, 201, 280
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	2 cut(s)	252, 296
SphI	GCATGC	1 cut(s)	96
Sse9I	AATT	2 cut(s)	28, 341
SspMI	CTAG	2 cut(s)	233, 279
StyD4I	CCNGG	2 cut(s)	172, 254
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	339
TasI	AATT	2 cut(s)	28, 341
TfiI	GAWTC	2 cut(s)	238, 288
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TspDTI	ATGAA	2 cut(s)	102, 236
VpaK11BI	GGWCC	2 cut(s)	252, 296
XagI	CCTNNNNNAGG	1 cut(s)	282
XapI	RAATTY	2 cut(s)	28, 341
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	1 cut(s)	96
XspI	CTAG	2 cut(s)	233, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.