Rroxscaffold_1G00064330

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
86133875 .. 86136370
2496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064330.1

Sequence Viewer

Length: 648 bp
ATGGCTGATATACTGCTAGATAGGGACCTAAATCCTAAAATCTCTGACTTTGGTTTGGCCAAGCTAGACGAAGAGGAGAAGACGCATATTAGCACCAGAGTAGCTGGAACTATAGGATACATGGCGCCAGAGTATGCACTCTGGGGTTATTTAACTGACAAAGTAGATGTTTACAGTCTTGGAGTTGTTGCATTAGAGCTCGTATCTGGCAAAAACAACATCAAATATCGACCAAATGAGAATTATGTATGCCTACTAGATTGGGCCCTTGTTTTGCAACAAAAAGAAAATCTGATGGAGCTAGTGGATCCAAAGTTGGGATCCAAGTTCAACAAGGAAGAGGCAATGAGAATGATTAAAGTAGCTCTACTATGCACCGATCCATCACCAGCACTGAGACCTACAGTGTCTGCAGCACTAAGCATGCTTGAAGGCCGAGCTGCTATTCATGAATCAAGTAGAAATCTGAGTATGTATGGTGATGAACTGGGGTTTAAGGCCCTAAGAGATGACTATAATGATCTGAATATTCAACAGAGTCCAAGAGAGACTCAGAGCCTCATTTATTCATCCGATGCCAAAGGGCCAGATGCCTCTTCCTCAACGACTGTCCAGGATAGCTATACATTTAATCTTGATTCTCCATAG

Protein Analysis

215

Amino Acids

23.92

Weight (kDa)

4.72

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 140 2.1e-15 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 3 - 137 3.8e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AclWI GGATC 5 cut(s) 302, 315, 315, 328, 374
AcoI YGGCCR 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 331, 431, 533
AjnI CCWGG 1 cut(s) 612
AluBI AGCT 7 cut(s) 64, 104, 199, 301, 365, 440, 621
AluI AGCT 7 cut(s) 64, 104, 199, 301, 365, 440, 621
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 2 cut(s) 391, 542
AlwI GGATC 5 cut(s) 302, 315, 315, 328, 374
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 5 cut(s) 57, 264, 433, 498, 584
ApaI GGGCCC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 413, 440
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 5 cut(s) 25, 264, 265, 499, 584
AsuHPI GGTGA 2 cut(s) 378, 491
AvaII GGWCC 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 268
BalI TGGCCA 1 cut(s) 59
BamHI GGATCC 2 cut(s) 307, 320
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 2 cut(s) 201, 268
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 425, 427
BccI CCATC 2 cut(s) 289, 391
BciT130I CCWGG 1 cut(s) 614
BciVI GTATCC 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 391, 542
BfaI CTAG 4 cut(s) 17, 65, 257, 302
BfmI CTRYAG 3 cut(s) 111, 402, 411
BfoI RGCGCY 1 cut(s) 128
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 2 cut(s) 414, 441
BlsI GCNGC 2 cut(s) 415, 442
Bme1390I CCNGG 1 cut(s) 614
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 5 cut(s) 25, 264, 265, 499, 584
BmiI GGNNCC 5 cut(s) 26, 126, 266, 309, 322
BmrFI CCNGG 1 cut(s) 614
BmrI ACTGGG 1 cut(s) 497
BmsI GCATC 2 cut(s) 565, 580
BmuI ACTGGG 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 391
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 492
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 614
BseGI GGATG 1 cut(s) 569
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 3 cut(s) 386, 458, 566
BseNI ACTGG 1 cut(s) 492
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 2 cut(s) 425, 427
BshFI GGCC 5 cut(s) 59, 266, 435, 500, 586
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 201
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 391, 542
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 5 cut(s) 59, 266, 435, 500, 586
Bso31I GGTCTC 1 cut(s) 391
Bsp120I GGGCCC 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 201, 268
Bsp143I GATC 4 cut(s) 307, 320, 379, 520
BspANI GGCC 5 cut(s) 59, 266, 435, 500, 586
BspCNI CTCAG 3 cut(s) 387, 459, 565
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 5 cut(s) 26, 126, 266, 309, 322
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 5 cut(s) 302, 315, 315, 328, 374
BspT107I GGYRCC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 492
BssMI GATC 4 cut(s) 307, 320, 379, 520
BssNI GRCGYC 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 3 cut(s) 176, 406, 610
Bst6I CTCTTC 3 cut(s) 66, 333, 601
BstACI GRCGYC 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 5 cut(s) 395, 419, 467, 503, 552
BstF5I GGATG 1 cut(s) 569
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 4 cut(s) 310, 323, 382, 523
BstMAI GTCTC 2 cut(s) 391, 542
BstMBI GATC 4 cut(s) 307, 320, 379, 520
BstNI CCWGG 1 cut(s) 614
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 612
BstSFI CTRYAG 3 cut(s) 111, 402, 411
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 425, 427
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 307, 320
BstYI RGATCY 2 cut(s) 307, 320
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 5 cut(s) 59, 266, 435, 500, 586
BtsCI GGATG 1 cut(s) 569
BtsIMutI CAGTG 2 cut(s) 392, 411
Cac8I GCNNGC 1 cut(s) 425
CaiI CAGNNNCTG 1 cut(s) 410
CciI TCATGA 1 cut(s) 448
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 5 cut(s) 25, 264, 265, 499, 584
CseI GACGC 1 cut(s) 91
CviAII CATG 3 cut(s) 121, 424, 449
DdeI CTNAG 5 cut(s) 395, 419, 467, 503, 552
DinI GGCGCC 1 cut(s) 126
DpnI GATC 4 cut(s) 309, 322, 381, 522
DpnII GATC 4 cut(s) 307, 320, 379, 520
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 3 cut(s) 66, 333, 601
EarI CTCTTC 3 cut(s) 66, 333, 601
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 2 cut(s) 201, 268
Eco31I GGTCTC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 199
EcoO109I RGGNCCY 3 cut(s) 25, 265, 499
EcoRII CCWGG 1 cut(s) 612
EcoT38I GRGCYC 2 cut(s) 201, 268
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
FaeI CATG 3 cut(s) 124, 427, 452
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 120, 423, 448
Fnu4HI GCNGC 2 cut(s) 414, 441
FokI GGATG 1 cut(s) 556
FriOI GRGCYC 2 cut(s) 201, 268
Fsp4HI GCNGC 2 cut(s) 414, 441
FspBI CTAG 4 cut(s) 17, 65, 257, 302
GlaI GCGC 1 cut(s) 126
GluI GCNGC 2 cut(s) 414, 441
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 5 cut(s) 59, 266, 435, 500, 586
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 3 cut(s) 124, 427, 452
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 4 cut(s) 452, 538, 550, 638
HphI GGTGA 2 cut(s) 378, 491
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 6 cut(s) 46, 294, 468, 525, 555, 574
Hpy188III TCNNGA 2 cut(s) 449, 635
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 3 cut(s) 176, 406, 610
HpyCH4V TGCA 5 cut(s) 137, 191, 277, 375, 413
HpyF3I CTNAG 5 cut(s) 395, 419, 467, 503, 552
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 3 cut(s) 124, 427, 452
HspAI GCGC 1 cut(s) 125
KasI GGCGCC 1 cut(s) 124
Kzo9I GATC 4 cut(s) 307, 320, 379, 520
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 2 cut(s) 425, 427
LweI GCATC 2 cut(s) 565, 580
MaeI CTAG 4 cut(s) 17, 65, 257, 302
MalI GATC 4 cut(s) 309, 322, 381, 522
MboI GATC 4 cut(s) 307, 320, 379, 520
MboII GAAGA 4 cut(s) 83, 91, 350, 588
MflI RGATCY 2 cut(s) 307, 320
MhlI GDGCHC 2 cut(s) 201, 268
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 1 cut(s) 241
MluNI TGGCCA 1 cut(s) 59
Mly113I GGCGCC 1 cut(s) 125
MlyI GAGTC 2 cut(s) 544, 547
MnlI CCTC 5 cut(s) 67, 334, 569, 604, 610
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 4 cut(s) 152, 357, 495, 630
Msp20I TGGCCA 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 614
MvaI CCWGG 1 cut(s) 614
NarI GGCGCC 1 cut(s) 125
NdeII GATC 4 cut(s) 307, 320, 379, 520
NlaIII CATG 3 cut(s) 124, 427, 452
NlaIV GGNNCC 5 cut(s) 26, 126, 266, 309, 322
NmeAIII GCCGAG 1 cut(s) 461
NspI RCATGY 1 cut(s) 427
PaeI GCATGC 1 cut(s) 427
PagI TCATGA 1 cut(s) 448
PfeI GAWTC 2 cut(s) 452, 638
PfoI TCCNGGA 1 cut(s) 612
PkrI GCNGC 2 cut(s) 415, 442
PleI GAGTC 2 cut(s) 544, 546
PluTI GGCGCC 1 cut(s) 128
PpsI GAGTC 2 cut(s) 544, 546
PpuMI RGGWCCY 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 5 cut(s) 26, 126, 266, 309, 322
PspOMI GGGCCC 1 cut(s) 264
PspPI GGNCC 5 cut(s) 25, 264, 265, 499, 584
PspPPI RGGWCCY 1 cut(s) 25
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 307, 320
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 4 cut(s) 152, 357, 495, 630
SatI GCNGC 2 cut(s) 414, 441
Sau3AI GATC 4 cut(s) 307, 320, 379, 520
Sau96I GGNCC 5 cut(s) 25, 264, 265, 499, 584
SchI GAGTC 2 cut(s) 544, 547
ScrFI CCNGG 1 cut(s) 614
SduI GDGCHC 2 cut(s) 201, 268
SetI ASST 9 cut(s) 30, 66, 106, 201, 303, 367, 403, 442, 623
SfaNI GCATC 2 cut(s) 565, 580
SfcI CTRYAG 3 cut(s) 111, 402, 411
SfoI GGCGCC 1 cut(s) 126
SinI GGWCC 1 cut(s) 25
SphI GCATGC 1 cut(s) 427
Sse9I AATT 1 cut(s) 241
SspDI GGCGCC 1 cut(s) 124
SspI AATATT 1 cut(s) 529
SspMI CTAG 4 cut(s) 17, 65, 257, 302
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 612
TaaI ACNGT 3 cut(s) 176, 406, 610
TaqI TCGA 1 cut(s) 229
TasI AATT 1 cut(s) 241
TfiI GAWTC 2 cut(s) 452, 638
Tru1I TTAA 4 cut(s) 152, 357, 495, 630
Tru9I TTAA 4 cut(s) 152, 357, 495, 630
TscAI CASTG 2 cut(s) 399, 411
TseI GCWGC 2 cut(s) 413, 440
TspDTI ATGAA 4 cut(s) 437, 465, 498, 558
TspRI CASTG 2 cut(s) 399, 411
VpaK11BI GGWCC 1 cut(s) 25
XceI RCATGY 1 cut(s) 427
XspI CTAG 4 cut(s) 17, 65, 257, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.