Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009761.1

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

28734 .. 29597

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009761.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggactggccaacaaggcataagatttgtattgggatagcaagaggacttgcttttcttcatgaagaatctgtattaaaaattgttcaccgagacatcaaagcaactaatgtgctgcttgatgtggacttaaaccctaaaatatctgactttggactggcaaagcttgatgaagaggagaagacacacataagcactcgagttgccgggaccgtagggtatatggcaccggaatatgcactatggggtcacctgacctacaaatcagatgtttacagttttggagtagtggccctggaacttattagtgggaagaacaacaatgcttatatgccaagtgatgattgtgtttgtcttttagattgggcttgtcatttgcaacaatctggaaagttgttggagctagtcgatgagaagttagggtccgagtttgacaaaaaggaagcagagatcatggtcaaagtagctctgatatgcacaaacgcctctgcttcacttaggcctagcatgtctgaggtggtcaaaatgcttgaaggacaaaaagacgttcccgacgtgatcccagaaccgagtagctacaaggaggatttgaggtttaaggccatgagagacctccatcgccagaggggaactgacagttcaactatgagccaaaacaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

220

Amino Acids

24.64

Weight (kDa)

5.66

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AclWI	GGATC	1 cut(s)	553
AcoI	YGGCCR	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	533, 642
AjiI	CACGTC	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	4 cut(s)	166, 403, 467, 576
AluI	AGCT	4 cut(s)	166, 403, 467, 576
Alw26I	GTCTC	2 cut(s)	87, 603
AlwI	GGATC	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	4 cut(s)	8, 291, 500, 600
ApeKI	GCWGC	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	210, 292, 423
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	80, 242
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	2 cut(s)	210, 423
BalI	TGGCCA	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	624
BciT130I	CCWGG	1 cut(s)	296
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	87, 603
BfaI	CTAG	2 cut(s)	404, 504
BglI	GCCNNNNNGGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	2 cut(s)	208, 296
Bme18I	GGWCC	2 cut(s)	210, 423
BmeT110I	CYCGRG	1 cut(s)	198
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	3 cut(s)	210, 292, 423
BmiI	GGNNCC	3 cut(s)	211, 228, 424
BmrFI	CCNGG	2 cut(s)	208, 296
BpiI	GAAGAC	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	208
BsaI	GGTCTC	1 cut(s)	603
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	11, 162
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	11, 162
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	4 cut(s)	10, 293, 502, 602
BshNI	GGYRCC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	207, 230
BslFI	GGGAC	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	87, 603
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	4 cut(s)	10, 293, 502, 602
Bso31I	GGTCTC	1 cut(s)	603
BsoBI	CYCGRG	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	450, 558
BspANI	GGCC	4 cut(s)	10, 293, 502, 602
BspCNI	CTCAG	1 cut(s)	505
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	211, 228, 424
BspPI	GGATC	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	11, 162
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	450, 558
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	3 cut(s)	214, 278, 638
Bst6I	CTCTTC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	497, 513
BstEII	GGTNACC	1 cut(s)	248
BstKTI	GATC	2 cut(s)	453, 561
BstMAI	GTCTC	2 cut(s)	87, 603
BstMBI	GATC	2 cut(s)	450, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	511
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	206, 294
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	188
BsuRI	GGCC	4 cut(s)	10, 293, 502, 602
BtgZI	GCGATG	1 cut(s)	602
BtrI	CACGTC	1 cut(s)	556
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	3 cut(s)	210, 292, 423
CviAII	CATG	4 cut(s)	62, 454, 508, 604
DdeI	CTNAG	2 cut(s)	497, 513
DpnI	GATC	2 cut(s)	452, 560
DpnII	GATC	2 cut(s)	450, 558
EaeI	YGGCCR	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	603
Eco47I	GGWCC	2 cut(s)	210, 423
Eco88I	CYCGRG	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	294
FaeI	CATG	4 cut(s)	65, 457, 511, 607
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	4 cut(s)	61, 453, 507, 603
Fnu4HI	GCNGC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	2 cut(s)	404, 504
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	4 cut(s)	10, 293, 502, 602
HapII	CCGG	2 cut(s)	207, 230
Hin1II	CATG	4 cut(s)	65, 457, 511, 607
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	2 cut(s)	207, 230
HphI	GGTGA	2 cut(s)	80, 242
Hpy166II	GTNNAC	3 cut(s)	88, 127, 274
Hpy188I	TCNGA	5 cut(s)	148, 268, 427, 471, 514
Hpy188III	TCNNGA	3 cut(s)	62, 387, 551
Hpy8I	GTNNAC	3 cut(s)	88, 127, 274
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	3 cut(s)	214, 278, 638
HpyCH4IV	ACGT	2 cut(s)	546, 555
HpyCH4V	TGCA	3 cut(s)	239, 379, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	2 cut(s)	497, 513
HpySE526I	ACGT	2 cut(s)	546, 555
Hsp92II	CATG	4 cut(s)	65, 457, 511, 607
Kzo9I	GATC	2 cut(s)	450, 558
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	9 cut(s)	143, 220, 243, 266, 281, 308, 372, 576, 635
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	2 cut(s)	404, 504
MaeII	ACGT	2 cut(s)	546, 555
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	452, 560
MboI	GATC	2 cut(s)	450, 558
MboII	GAAGA	5 cut(s)	50, 77, 185, 193, 325
MlsI	TGGCCA	1 cut(s)	10
MluCI	AATT	1 cut(s)	81
MluNI	TGGCCA	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	8 cut(s)	38, 169, 496, 508, 577, 585, 618, 623
Mox20I	TGGCCA	1 cut(s)	10
MscI	TGGCCA	1 cut(s)	10
MseI	TTAA	3 cut(s)	77, 131, 597
Msp20I	TGGCCA	1 cut(s)	10
MspI	CCGG	2 cut(s)	207, 230
MspR9I	CCNGG	2 cut(s)	208, 296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	16
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	450, 558
NlaIII	CATG	4 cut(s)	65, 457, 511, 607
NlaIV	GGNNCC	3 cut(s)	211, 228, 424
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	198
PagI	TCATGA	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	211, 228, 424
PspPI	GGNCC	3 cut(s)	210, 292, 423
PspXI	VCTCGAGB	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	77, 131, 597
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	450, 558
Sau96I	GGNCC	3 cut(s)	210, 292, 423
ScrFI	CCNGG	2 cut(s)	208, 296
Sfr274I	CTCGAG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	210, 423
SlaI	CTCGAG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	81
SseBI	AGGCCT	1 cut(s)	502
SspMI	CTAG	2 cut(s)	404, 504
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	2 cut(s)	206, 294
TaaI	ACNGT	3 cut(s)	214, 278, 638
TaiI	ACGT	2 cut(s)	549, 558
TaqI	TCGA	2 cut(s)	199, 408
TasI	AATT	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	77, 131, 597
Tru9I	TTAA	3 cut(s)	77, 131, 597
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	50, 78, 186
VpaK11BI	GGWCC	2 cut(s)	210, 423
XceI	RCATGY	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	198
XspI	CTAG	2 cut(s)	404, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.