Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

44257884 .. 44259275

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1186000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTGCTAGGAAATACACTAGGACTGGATCTGCAAACTGGTTTTTTCACCTTCAGGCAAATTAAAGCTGCCACTAACAACTTTGATCCTGAAAACAAAATCGGGGAAGGCGGTTTTGGGTCTGTCTACAAGGGTATATTGTTGGATGGTACTATAATCGCGGTTAAGCAACTATCATCAAAATCAAAGCAAGGAAATCGGGAATTTGTGAATGAAATAGGCATGATATCTGCTTTGCATCATCCAAATCTTGTCAGATTGTATGGATGTTGTATTGAATCAAACCAATTACTGTTGTCGCCACTGAAGGTTGTACATAGAGACATTAAAGCTACAAATATATTGCTAGACCAAGACCTCAACGCAAAGATCTCTGACTTTGGTTTGGCCAAGCTTGACGAAGAGGAGAACACTCACATTAGCACCAGAGTTGCTGGAACCATAGGATACATGGCTCCAGAATATGCACTATGGGGTTATTTAACATATAAAGCAGATGCTCTTGTTTTACAACAAAAGGGGAACTTAATAGAGCTAGTGGATCCAAGGTTGGGGTCCGATTTTGAAGTGGAAGAGGCAATTACAATGGTCAAGGTAGCTCTCTTATGCATCAATCCAGCACCAGCTCTCAGGCCGACCATGTCTGCAGTAGTGAGCATGCTTGAAGGACGGACACTTGTTCGTGAATCAGGTCATGAACCCAAATATTTACGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

240

Amino Acids

26.36

Weight (kDa)

6.22

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	30 - 99	5.9e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 98	6.2e-13	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	100 - 166	7.7e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	103 - 156	1.4e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	161
AciI	CCGC	2 cut(s)	111, 161
AclWI	GGATC	4 cut(s)	36, 80, 536, 549
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	2 cut(s)	37, 326
AfaI	GTAC	2 cut(s)	151, 315
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	278, 566, 665
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	6 cut(s)	68, 332, 394, 535, 599, 626
AluI	AGCT	6 cut(s)	68, 332, 394, 535, 599, 626
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	4 cut(s)	36, 80, 536, 549
AoxI	GGCC	2 cut(s)	387, 632
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	555
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	389
BamHI	GGATCC	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciVI	GTATCC	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	4 cut(s)	8, 20, 347, 536
BfmI	CTRYAG	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	440
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	555
BmgT120I	GGNCC	1 cut(s)	555
BmiI	GGNNCC	4 cut(s)	439, 456, 543, 556
BmsI	GCATC	3 cut(s)	247, 487, 618
BpmI	CTGGAG	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	2 cut(s)	30, 43
BseDI	CCNNGG	1 cut(s)	545
BseGI	GGATG	3 cut(s)	151, 241, 272
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	643
BseNI	ACTGG	2 cut(s)	30, 43
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	389, 634
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	389, 634
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	28, 85, 369, 541
BspACI	CCGC	2 cut(s)	111, 161
BspANI	GGCC	2 cut(s)	389, 634
BspCNI	CTCAG	1 cut(s)	642
BspFNI	CGCG	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	4 cut(s)	439, 456, 543, 556
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	4 cut(s)	36, 80, 536, 549
BsrGI	TGTACA	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	30, 43
BssECI	CCNNGG	1 cut(s)	545
BssMI	GATC	4 cut(s)	28, 85, 369, 541
BssT1I	CCWWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	294
Bst6I	CTCTTC	2 cut(s)	396, 567
BstAUI	TGTACA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	659
BstDEI	CTNAG	1 cut(s)	629
BstF5I	GGATG	3 cut(s)	151, 241, 272
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	4 cut(s)	31, 88, 372, 544
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	28, 85, 369, 541
BstNSI	RCATGY	1 cut(s)	661
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	3 cut(s)	28, 369, 541
BstYI	RGATCY	3 cut(s)	28, 369, 541
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	389, 634
BtsCI	GGATG	3 cut(s)	151, 241, 272
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	659
CciI	TCATGA	1 cut(s)	694
Cfr13I	GGNCC	1 cut(s)	555
Csp6I	GTAC	2 cut(s)	150, 314
CviAII	CATG	5 cut(s)	223, 451, 640, 658, 695
CviJI	RGCY	9 cut(s)	68, 332, 389, 394, 455, 535, 599, 626, 634
CviKI_1	RGCY	9 cut(s)	68, 332, 389, 394, 455, 535, 599, 626, 634
CviQI	GTAC	2 cut(s)	150, 314
DdeI	CTNAG	1 cut(s)	629
DpnI	GATC	4 cut(s)	30, 87, 371, 543
DpnII	GATC	4 cut(s)	28, 85, 369, 541
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	396, 567
EarI	CTCTTC	2 cut(s)	396, 567
Eco130I	CCWWGG	1 cut(s)	545
Eco32I	GATATC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	555
Eco57I	CTGAAG	2 cut(s)	37, 326
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	545
EcoT22I	ATGCAT	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	5 cut(s)	226, 454, 643, 661, 698
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FatI	CATG	5 cut(s)	222, 450, 639, 657, 694
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	3 cut(s)	158, 228, 279
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	4 cut(s)	8, 20, 347, 536
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	389, 634
Hin1II	CATG	5 cut(s)	226, 454, 643, 661, 698
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	2 cut(s)	278, 686
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	3 cut(s)	257, 376, 559
Hpy188III	TCNNGA	5 cut(s)	89, 200, 458, 683, 695
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	61, 101, 301, 659
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4V	TGCA	5 cut(s)	34, 238, 467, 609, 647
HpyF3I	CTNAG	1 cut(s)	629
Hsp92II	CATG	5 cut(s)	226, 454, 643, 661, 698
Kzo9I	GATC	4 cut(s)	28, 85, 369, 541
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	3 cut(s)	247, 487, 618
MaeI	CTAG	4 cut(s)	8, 20, 347, 536
MalI	GATC	4 cut(s)	30, 87, 371, 543
MboI	GATC	4 cut(s)	28, 85, 369, 541
MboII	GAAGA	2 cut(s)	413, 584
MflI	RGATCY	3 cut(s)	28, 369, 541
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	4 cut(s)	60, 203, 287, 579
MluNI	TGGCCA	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	3 cut(s)	368, 397, 568
Mox20I	TGGCCA	1 cut(s)	389
Mph1103I	ATGCAT	1 cut(s)	611
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	5 cut(s)	63, 165, 327, 482, 527
Msp20I	TGGCCA	1 cut(s)	389
MvnI	CGCG	1 cut(s)	161
NdeII	GATC	4 cut(s)	28, 85, 369, 541
NlaIII	CATG	5 cut(s)	226, 454, 643, 661, 698
NlaIV	GGNNCC	4 cut(s)	439, 456, 543, 556
NsiI	ATGCAT	1 cut(s)	611
NspI	RCATGY	1 cut(s)	661
PaeI	GCATGC	1 cut(s)	661
PagI	TCATGA	1 cut(s)	694
PfeI	GAWTC	2 cut(s)	278, 686
PflFI	GACNNNGTC	1 cut(s)	640
PkrI	GCNGC	1 cut(s)	70
PspN4I	GGNNCC	4 cut(s)	439, 456, 543, 556
PspPI	GGNCC	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	3 cut(s)	28, 369, 541
PsyI	GACNNNGTC	1 cut(s)	640
RsaI	GTAC	2 cut(s)	151, 315
RsaNI	GTAC	2 cut(s)	150, 314
SaqAI	TTAA	5 cut(s)	63, 165, 327, 482, 527
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	4 cut(s)	28, 85, 369, 541
Sau96I	GGNCC	1 cut(s)	555
SfaNI	GCATC	3 cut(s)	247, 487, 618
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	555
SphI	GCATGC	1 cut(s)	661
Sse9I	AATT	4 cut(s)	60, 203, 287, 579
SsiI	CCGC	2 cut(s)	111, 161
SspI	AATATT	1 cut(s)	707
SspMI	CTAG	4 cut(s)	8, 20, 347, 536
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	1 cut(s)	294
TasI	AATT	4 cut(s)	60, 203, 287, 579
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	278, 686
Tru1I	TTAA	5 cut(s)	63, 165, 327, 482, 527
Tru9I	TTAA	5 cut(s)	63, 165, 327, 482, 527
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	228, 711
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	555
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	4 cut(s)	8, 20, 347, 536
Zsp2I	ATGCAT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.