Rroxscaffold_1G00064480

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
86318732 .. 86319384
653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064480.1

Sequence Viewer

Length: 519 bp
ATGGCGCCAGAATACGCACTATGGGGTTATTTAACCTTCAAAGCGGATGTCTTTAGTTTTGGTGTTGTTGCATTGGAAATAGTTGCTGGAAAGAACAACATGAAATTTCGACCAAATGAGGATTTTGTAGGCCTTGTGGATTGGGCTCTTGTTTTACAACAAAAAGAGAGTTTAGTGGAGCTTGTGGATCCAAGATTAGGGTCAGATTTCAGTAACGAAGAGGCGGTTAGAATGGTTAAAGTAGCTCTGCTATGCATCAATCCGGTAGCTGCACTTAGGCCTACCATGTCTGCAGTCGTGAGTATGCTCGAAGGGCGAACCCCTGTCATTAAATTGATTATGGATCCAAATATATATAGTGAAGAAATGAGGTTAACAGCCTTGAGAAATCCATTTGATCGGCAGATTGCACAAGAGAGAGCAGGTGGAAGTCAAAGCTTGATACATTCGTCCGGTACATCATGGAATGATTCTTCTGCTCCTACTATATCTTCAGATCTCTATATAATCAATCCTTAG

Protein Analysis

172

Amino Acids

19.02

Weight (kDa)

4.89

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 413
Acc36I ACCTGC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 2 cut(s) 44, 224
AclWI GGATC 4 cut(s) 182, 195, 338, 351
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 4 cut(s) 181, 245, 269, 438
AluI AGCT 4 cut(s) 181, 245, 269, 438
AlwI GGATC 4 cut(s) 182, 195, 338, 351
AoxI GGCC 2 cut(s) 130, 278
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 104
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AspLEI GCGC 1 cut(s) 7
BaeI ACNNNNGTAYC 2 cut(s) 434, 467
BamHI GGATCC 2 cut(s) 187, 343
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 256
BfmI CTRYAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 413
BglII AGATCT 1 cut(s) 496
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmiI GGNNCC 3 cut(s) 6, 189, 345
BmsI GCATC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 403
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 2 cut(s) 262, 452
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 2 cut(s) 132, 280
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 2 cut(s) 263, 453
BslI CCNNNNNNNGG 1 cut(s) 197
BsnI GGCC 2 cut(s) 132, 280
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 4 cut(s) 187, 343, 397, 496
BspACI CCGC 2 cut(s) 44, 224
BspANI GGCC 2 cut(s) 132, 280
BspLI GGNNCC 3 cut(s) 6, 189, 345
BspMAI CTGCAG 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 4 cut(s) 182, 195, 338, 351
BspT107I GGYRCC 1 cut(s) 4
BssMI GATC 4 cut(s) 187, 343, 397, 496
BssNI GRCGYC 1 cut(s) 5
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 275, 516
BstF5I GGATG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 190, 346, 400, 499
BstMBI GATC 4 cut(s) 187, 343, 397, 496
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 3 cut(s) 187, 343, 496
BstYI RGATCY 3 cut(s) 187, 343, 496
BsuRI GGCC 2 cut(s) 132, 280
BtsCI GGATG 1 cut(s) 52
BveI ACCTGC 1 cut(s) 413
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 456
CviAII CATG 3 cut(s) 100, 286, 462
CviJI RGCY 8 cut(s) 132, 146, 181, 245, 269, 280, 380, 438
CviKI_1 RGCY 8 cut(s) 132, 146, 181, 245, 269, 280, 380, 438
CviQI GTAC 1 cut(s) 456
DdeI CTNAG 2 cut(s) 275, 516
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 189, 345, 399, 498
DpnII GATC 4 cut(s) 187, 343, 397, 496
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco147I AGGCCT 2 cut(s) 132, 280
Eco24I GRGCYC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 148
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 3 cut(s) 103, 289, 465
FatI CATG 3 cut(s) 99, 285, 461
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 270
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 132, 280
HapII CCGG 2 cut(s) 263, 453
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 103, 289, 465
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 1 cut(s) 470
HpaI GTTAAC 1 cut(s) 375
HpaII CCGG 2 cut(s) 263, 453
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 2 cut(s) 205, 496
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 2 cut(s) 46, 305
HpyCH4V TGCA 5 cut(s) 71, 255, 272, 293, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 2 cut(s) 275, 516
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 103, 289, 465
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KspAI GTTAAC 1 cut(s) 375
Kzo9I GATC 4 cut(s) 187, 343, 397, 496
LmnI GCTCC 2 cut(s) 178, 484
LpnPI CCDG 6 cut(s) 21, 72, 276, 336, 408, 466
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 212
MalI GATC 4 cut(s) 189, 345, 399, 498
MboI GATC 4 cut(s) 187, 343, 397, 496
MboII GAAGA 4 cut(s) 230, 374, 465, 483
MflI RGATCY 3 cut(s) 187, 343, 496
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 104, 332
Mly113I GGCGCC 1 cut(s) 5
MnlI CCTC 3 cut(s) 112, 214, 363
Mph1103I ATGCAT 1 cut(s) 257
MseI TTAA 4 cut(s) 32, 237, 330, 374
MspI CCGG 2 cut(s) 263, 453
MwoI GCNNNNNNNGC 1 cut(s) 313
NarI GGCGCC 1 cut(s) 5
NdeII GATC 4 cut(s) 187, 343, 397, 496
NlaIII CATG 3 cut(s) 103, 289, 465
NlaIV GGNNCC 3 cut(s) 6, 189, 345
NsiI ATGCAT 1 cut(s) 257
PaqCI CACCTGC 1 cut(s) 413
PceI AGGCCT 2 cut(s) 132, 280
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 1 cut(s) 271
PluTI GGCGCC 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 6, 189, 345
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 3 cut(s) 187, 343, 496
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
SaqAI TTAA 4 cut(s) 32, 237, 330, 374
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 4 cut(s) 187, 343, 397, 496
SduI GDGCHC 1 cut(s) 148
SetI ASST 7 cut(s) 38, 183, 247, 271, 374, 427, 440
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 291
SfoI GGCGCC 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 2 cut(s) 104, 332
SseBI AGGCCT 2 cut(s) 132, 280
SsiI CCGC 2 cut(s) 44, 224
SspDI GGCGCC 1 cut(s) 4
StuI AGGCCT 2 cut(s) 132, 280
TaqI TCGA 2 cut(s) 109, 309
TasI AATT 2 cut(s) 104, 332
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 4 cut(s) 32, 237, 330, 374
Tru9I TTAA 4 cut(s) 32, 237, 330, 374
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 116
XapI RAATTY 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.