pycom11g23550

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
26502646 .. 26505525
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g23550.4

Sequence Viewer

Length: 660 bp
ATGCAGTTTGACGCTTTCCATAACCACAAAGCAAAAACACTGATTTTTCTCACTCCTTATCGGCGGCCCGAATCTCCCTCTCTATATCTCTCTATCTCTCTCTCTCTCTCCAAAAAAACATACTCACCTCTTTGTCCCTTTCCCTCCACGCCAAAAACCATCCACTCCCTCTGTTTCTTTCTCTCTCTTCTTTCTATTTCCGTTTTGTTGTCGTTTGTTGAATGTAAAGACAATAAGATTGGAATTTGGTTTTGCTGTAAACATCGAAGAAAAGCAGTTATTGCGTCCTGGAGGAAAATGAGATTCATGTTTACGAGTTCTGAGATTGTTTTCGTTCTTCTGCTGGGGTTTCTGGCTTTGAATTGCTTCACTGAGTTCGAATCGAATGCTCAACTTTTGCCTCTGGAAGAAGTGAAAATTCTTGAAACAATTTCCAAAAAGTTACACAACACTCACTGGAACATCAGTCAAAGTTCTTGCCAAGATGGTGGAGCAGGCTTCTACAAATACTTCACTGATGATATTCTGAGCAATGTCACTTGCAACTGTTCCTTTCCAAGCAACACTTGCCATGTCACAATCATTGAGATGAAGGGTCTCAATTTAACTGGAGTTATACCTGAGGAACTCGGAAATCTCACACATCTGGAAGCAATGTAA

Protein Analysis

220

Amino Acids

24.9

Weight (kDa)

8.51

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 243, 417
AgsI TTSAA 3 cut(s) 221, 361, 425
AjnI CCWGG 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 602
AoxI GGCC 1 cut(s) 65
ApoI RAATTY 2 cut(s) 243, 417
Asp700I GAANNNNTTC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 117
AsuII TTCGAA 1 cut(s) 378
AxyI CCTNAGG 1 cut(s) 621
BccI CCATC 2 cut(s) 167, 479
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 602
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 289
BpmI CTGGAG 2 cut(s) 310, 630
Bpu14I TTCGAA 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 602
Bse1I ACTGG 2 cut(s) 461, 613
Bse21I CCTNAGG 1 cut(s) 621
Bse3DI GCAATG 2 cut(s) 538, 660
BseBI CCWGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 159
BseMI GCAATG 2 cut(s) 538, 660
BseMII CTCAG 4 cut(s) 312, 363, 518, 612
BseNI ACTGG 2 cut(s) 461, 613
BseYI CCCAGC 1 cut(s) 343
BshFI GGCC 1 cut(s) 67
BslFI GGGAC 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 602
Bsp119I TTCGAA 1 cut(s) 378
BspACI CCGC 1 cut(s) 64
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 4 cut(s) 313, 364, 519, 613
BspT104I TTCGAA 1 cut(s) 378
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 2 cut(s) 538, 660
BsrI ACTGG 2 cut(s) 461, 613
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 192
BstAPI GCANNNNNTGC 2 cut(s) 281, 567
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 496
BstDEI CTNAG 4 cut(s) 321, 372, 527, 621
BstF5I GGATG 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 602
BstMWI GCNNNNNNNGC 2 cut(s) 281, 567
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstXI CCANNNNNNTGG 1 cut(s) 488
Bsu36I CCTNAGG 1 cut(s) 621
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 4 cut(s) 38, 369, 454, 513
Cac8I GCNNGC 1 cut(s) 496
Cfr13I GGNCC 1 cut(s) 66
CseI GACGC 2 cut(s) 20, 273
CviAII CATG 2 cut(s) 307, 572
CviJI RGCY 3 cut(s) 67, 356, 498
CviKI_1 RGCY 3 cut(s) 67, 356, 498
DdeI CTNAG 4 cut(s) 321, 372, 527, 621
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 602
Eco81I CCTNAGG 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 287
FaeI CATG 2 cut(s) 310, 575
FaiI YATR 6 cut(s) 21, 85, 121, 308, 573, 617
FalI AAGNNNNNCTT 2 cut(s) 550, 582
FaqI GGGAC 1 cut(s) 120
FatI CATG 2 cut(s) 306, 571
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
GsaI CCCAGC 1 cut(s) 347
GsuI CTGGAG 2 cut(s) 310, 630
HaeIII GGCC 1 cut(s) 67
HgaI GACGC 2 cut(s) 20, 273
Hin1II CATG 2 cut(s) 310, 575
HinfI GANTC 3 cut(s) 71, 303, 380
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 2 cut(s) 260, 312
Hpy188I TCNGA 3 cut(s) 322, 528, 632
Hpy188III TCNNGA 3 cut(s) 404, 422, 647
Hpy8I GTNNAC 2 cut(s) 260, 312
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 2 cut(s) 4, 543
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 567
HpyF3I CTNAG 4 cut(s) 321, 372, 527, 621
Hsp92II CATG 2 cut(s) 310, 575
LmnI GCTCC 1 cut(s) 491
MaeIII GTNAC 3 cut(s) 441, 535, 574
MboII GAAGA 4 cut(s) 179, 279, 329, 419
MluCI AATT 5 cut(s) 243, 361, 417, 429, 601
MnlI CCTC 7 cut(s) 88, 138, 154, 179, 285, 411, 616
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 1 cut(s) 605
MslI CAYNNNNRTG 1 cut(s) 587
MspR9I CCNGG 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 281, 567
NlaIII CATG 2 cut(s) 310, 575
NmuCI GTSAC 2 cut(s) 535, 574
NspV TTCGAA 1 cut(s) 378
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 3 cut(s) 71, 303, 380
PfoI TCCNGGA 1 cut(s) 287
PkrI GCNGC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 287
PspPI GGNCC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 587
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 289
SetI ASST 2 cut(s) 130, 622
SfuI TTCGAA 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 587
Sse9I AATT 5 cut(s) 243, 361, 417, 429, 601
SsiI CCGC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 3 cut(s) 265, 378, 383
TasI AATT 5 cut(s) 243, 361, 417, 429, 601
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 3 cut(s) 71, 303, 380
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 4 cut(s) 45, 376, 461, 520
TseFI GTSAC 2 cut(s) 535, 574
Tsp45I GTSAC 2 cut(s) 535, 574
TspDTI ATGAA 2 cut(s) 295, 605
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 4 cut(s) 45, 376, 461, 520
XapI RAATTY 2 cut(s) 243, 417
XmnI GAANNNNTTC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.