RchiOBHm_Chr5g0012181

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
8122243 .. 8123481
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29278

Sequence Viewer

Length: 711 bp
ATGAGACAAAGTGGGGACAGACCACAACAATTCCTGTCGTTCCTGTTGAACATTATTGGTATATTATTGGATGGTACTATAATTGCGGTCAAGCAACTATCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAACGAAATAGGCATGATTTCTGGTTTGCAACATCCAAATCTTGTTAGATTGTATGGATGTTGTATTGAAGCAAATGAATTACTGTTGGTGTATGAATATATGGAAAACAATAGTCTTGCAGGCGCTTTATTTGGCCCAGAGGAAAGTCCACTCAAATTGGACTGGCCTACAAGGCAGAAAATATTCCTGGGCATAGCAAAAGGTCTGGCTTTTCTGCATGAGGAGTCAGCGTTGAAGGTTGTACATAGAGACATCAAAACTACAAATGTATTACTGGACAAAGATCTTAATGCTAAGATCTCAGACTTTGGTCTGGCAAAGCTCGATGAAGAAGAGAACACCCACATTAGCACAAGAGTTGCTGGAACTATAGGATACATGGCGCCAGAATACGCACTATGGGGTTATTTAACCTTCAAAGCAGATGTCTTTAGTTTTGGTGTTGTTGCATTGGAAATAGTTGCTGGAAAGAACAACATGAAATTTCGACCAAATGAGGATTTTGTAGGCCTTGTGGATTGGGCTCTTGTTTTACAACAAAAAGAGAGTTTAGTGGAGCTTGTGGATCCAAAGTAG

Protein Analysis

236

Amino Acids

26.37

Weight (kDa)

5.32

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 24 - 206 9.3e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 26 - 225 1.2e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 517
AciI CCGC 1 cut(s) 86
AclWI GGATC 2 cut(s) 695, 708
AcsI RAATTY 2 cut(s) 128, 617
AcyI GRCGYC 1 cut(s) 518
AfaI GTAC 2 cut(s) 76, 378
AgsI TTSAA 5 cut(s) 49, 105, 203, 370, 553
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 2 cut(s) 457, 694
AluI AGCT 2 cut(s) 457, 694
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 2 cut(s) 695, 708
AoxI GGCC 3 cut(s) 268, 299, 643
ApoI RAATTY 2 cut(s) 128, 617
ArsI GACNNNNNNTTYG 2 cut(s) 546, 578
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 2 cut(s) 260, 520
AspS9I GGNCC 1 cut(s) 269
BamHI GGATCC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 661
BccI CCATC 1 cut(s) 65
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 323
BciVI GTATCC 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 504
BfoI RGCGCY 2 cut(s) 261, 521
BfuI GTATCC 1 cut(s) 503
BglI GCCNNNNNGGC 1 cut(s) 307
BglII AGATCT 2 cut(s) 418, 432
Bme1390I CCNGG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 519, 702
BmrFI CCNGG 1 cut(s) 323
BoxI GACNNNNGTC 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bse1I ACTGG 2 cut(s) 302, 414
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 3 cut(s) 76, 166, 197
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 2 cut(s) 302, 414
BseRI GAGGAG 1 cut(s) 371
BshFI GGCC 3 cut(s) 270, 301, 645
BshNI GGYRCC 1 cut(s) 517
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 3 cut(s) 270, 301, 645
Bsp1286I GDGCHC 1 cut(s) 661
Bsp1407I TGTACA 1 cut(s) 376
Bsp143I GATC 3 cut(s) 418, 432, 700
BspACI CCGC 1 cut(s) 86
BspANI GGCC 3 cut(s) 270, 301, 645
BspCNI CTCAG 1 cut(s) 449
BspLI GGNNCC 2 cut(s) 519, 702
BspPI GGATC 2 cut(s) 695, 708
BspT107I GGYRCC 1 cut(s) 517
BsrGI TGTACA 1 cut(s) 376
BsrI ACTGG 2 cut(s) 302, 414
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 3 cut(s) 418, 432, 700
BssNI GRCGYC 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 462
BstACI GRCGYC 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 429, 436
BstF5I GGATG 3 cut(s) 76, 166, 197
BstH2I RGCGCY 2 cut(s) 261, 521
BstHHI GCGC 2 cut(s) 260, 520
BstKTI GATC 3 cut(s) 421, 435, 703
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 3 cut(s) 418, 432, 700
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstNI CCWGG 1 cut(s) 323
BstPAI GACNNNNGTC 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 504
BstX2I RGATCY 3 cut(s) 418, 432, 700
BstYI RGATCY 3 cut(s) 418, 432, 700
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 3 cut(s) 270, 301, 645
BtsCI GGATG 3 cut(s) 76, 166, 197
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 2 cut(s) 260, 520
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 75, 377
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviAII CATG 4 cut(s) 148, 353, 514, 613
CviJI RGCY 7 cut(s) 270, 301, 344, 457, 645, 659, 694
CviKI_1 RGCY 7 cut(s) 270, 301, 344, 457, 645, 659, 694
CviQI GTAC 2 cut(s) 75, 377
DdeI CTNAG 2 cut(s) 429, 436
DinI GGCGCC 1 cut(s) 519
DpnI GATC 3 cut(s) 420, 434, 702
DpnII GATC 3 cut(s) 418, 432, 700
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco147I AGGCCT 1 cut(s) 645
Eco24I GRGCYC 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 661
EgeI GGCGCC 1 cut(s) 519
EheI GGCGCC 1 cut(s) 519
FaeI CATG 4 cut(s) 151, 356, 517, 616
FaqI GGGAC 1 cut(s) 29
FatI CATG 4 cut(s) 147, 352, 513, 612
FokI GGATG 3 cut(s) 83, 153, 204
FriOI GRGCYC 1 cut(s) 661
GlaI GCGC 2 cut(s) 259, 519
HaeII RGCGCY 2 cut(s) 261, 521
HaeIII GGCC 3 cut(s) 270, 301, 645
HhaI GCGC 2 cut(s) 260, 520
Hin1I GRCGYC 1 cut(s) 518
Hin1II CATG 4 cut(s) 151, 356, 517, 616
Hin6I GCGC 2 cut(s) 258, 518
HinP1I GCGC 2 cut(s) 258, 518
HinfI GANTC 1 cut(s) 359
Hpy166II GTNNAC 2 cut(s) 136, 284
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 2 cut(s) 136, 284
HpyAV CCTTC 2 cut(s) 364, 559
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 163, 254, 352, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 2 cut(s) 429, 436
Hsp92I GRCGYC 1 cut(s) 518
Hsp92II CATG 4 cut(s) 151, 356, 517, 616
HspAI GCGC 2 cut(s) 258, 518
KasI GGCGCC 1 cut(s) 517
Kzo9I GATC 3 cut(s) 418, 432, 700
LmnI GCTCC 1 cut(s) 691
MalI GATC 3 cut(s) 420, 434, 702
MboI GATC 3 cut(s) 418, 432, 700
MboII GAAGA 3 cut(s) 93, 476, 479
MflI RGATCY 3 cut(s) 418, 432, 700
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 6 cut(s) 29, 81, 128, 212, 290, 617
Mly113I GGCGCC 1 cut(s) 518
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 3 cut(s) 268, 349, 625
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 2 cut(s) 423, 545
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 307
NarI GGCGCC 1 cut(s) 518
NdeII GATC 3 cut(s) 418, 432, 700
NlaIII CATG 4 cut(s) 151, 356, 517, 616
NlaIV GGNNCC 2 cut(s) 519, 702
PceI AGGCCT 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 317
PleI GAGTC 1 cut(s) 367
PluTI GGCGCC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 367
PshAI GACNNNNGTC 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 519, 702
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 3 cut(s) 418, 432, 700
RsaI GTAC 2 cut(s) 76, 378
RsaNI GTAC 2 cut(s) 75, 377
SaqAI TTAA 2 cut(s) 423, 545
Sau3AI GATC 3 cut(s) 418, 432, 700
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 1 cut(s) 661
SetI ASST 5 cut(s) 340, 375, 459, 551, 696
SfcI CTRYAG 1 cut(s) 504
SfoI GGCGCC 1 cut(s) 519
Sse9I AATT 6 cut(s) 29, 81, 128, 212, 290, 617
SseBI AGGCCT 1 cut(s) 645
SsiI CCGC 1 cut(s) 86
SspDI GGCGCC 1 cut(s) 517
SspI AATATT 1 cut(s) 318
StuI AGGCCT 1 cut(s) 645
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 459, 622
TasI AATT 6 cut(s) 29, 81, 128, 212, 290, 617
TatI WGTACW 1 cut(s) 376
Tru1I TTAA 2 cut(s) 423, 545
Tru9I TTAA 2 cut(s) 423, 545
TspDTI ATGAA 4 cut(s) 225, 243, 477, 629
XapI RAATTY 2 cut(s) 128, 617
XmnI GAANNNNTTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.