Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

4006767 .. 4007241

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAAAACTCTCAGTTGTACATGAATGCACGCTTTAGTCCTCTTTCTCTCACATATTATGCAAACTGCTTAGGAGATGGAAAATATACAGTGAAACTTCACTTTGCGGAGATAATAATCCGAGGCAATAGATCTTATCGCAGTGTTGGAAGACGGATATTTGATGTGTATATTCAGGAGAAACTCGTATTAAAGGATTTTAACATCGTAAAGGAAGCAGAAGGTGTTGATAAAGAAGTAATTAAAGAGACAAAGGCAGTTCAGGTTAAGAATAAAACTCTAGAGATCCGGTTTCATTGGTCTGGAAAAGGGACAACAGCTTCCCCAAGGAGAGGAATATATGGTCCCCTTATATCAGCCATTTCTATAGAGTCTAGTAATCTTCTGAATTTGTACAAGCTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

136

Amino Acids

15.48

Weight (kDa)

9.65

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	3 - 121	3e-33	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	2 cut(s)	20, 395
AfiI	CCNNNNNNNGG	1 cut(s)	332
AluBI	AGCT	2 cut(s)	320, 400
AluI	AGCT	2 cut(s)	320, 400
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	388
AspS9I	GGNCC	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	157
BccI	CCATC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	281, 375
BfmI	CTRYAG	1 cut(s)	366
BglII	AGATCT	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	121, 326
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	121, 326
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	289
BslFI	GGGAC	2 cut(s)	325, 330
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	2 cut(s)	325, 330
BsmI	GAATGC	1 cut(s)	31
Bsp1407I	TGTACA	2 cut(s)	18, 393
Bsp143I	GATC	2 cut(s)	131, 285
BspACI	CCGC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	280
BsrGI	TGTACA	2 cut(s)	18, 393
BssECI	CCNNGG	2 cut(s)	121, 326
BssMI	GATC	2 cut(s)	131, 285
BssT1I	CCWWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	91
BstAUI	TGTACA	2 cut(s)	18, 393
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	12, 70
BstKTI	GATC	2 cut(s)	134, 288
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	2 cut(s)	131, 285
BstSFI	CTRYAG	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	2 cut(s)	131, 285
BstYI	RGATCY	2 cut(s)	131, 285
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	96, 148
Cac8I	GCNNGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	19, 394
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	3 cut(s)	320, 359, 400
CviKI_1	RGCY	3 cut(s)	320, 359, 400
CviQI	GTAC	2 cut(s)	19, 394
DdeI	CTNAG	2 cut(s)	12, 70
DpnI	GATC	2 cut(s)	133, 287
DpnII	GATC	2 cut(s)	131, 285
Eco130I	CCWWGG	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	1 cut(s)	25
FaiI	YATR	9 cut(s)	23, 55, 60, 87, 171, 340, 342, 353, 368
FaqI	GGGAC	2 cut(s)	325, 330
FatI	CATG	1 cut(s)	21
FspBI	CTAG	2 cut(s)	281, 375
HapII	CCGG	1 cut(s)	289
Hin1II	CATG	1 cut(s)	25
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	122, 387
Hpy188III	TCNNGA	3 cut(s)	176, 281, 303
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	29, 62
HpyF3I	CTNAG	2 cut(s)	12, 70
Hsp92II	CATG	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	131, 285
LpnPI	CCDG	4 cut(s)	161, 248, 288, 302
MaeI	CTAG	2 cut(s)	281, 375
MalI	GATC	2 cut(s)	133, 287
MboI	GATC	2 cut(s)	131, 285
MboII	GAAGA	2 cut(s)	162, 374
MflI	RGATCY	2 cut(s)	131, 285
MluCI	AATT	2 cut(s)	240, 388
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	3 cut(s)	51, 116, 326
MseI	TTAA	5 cut(s)	191, 201, 243, 267, 406
MspI	CCGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	31
NdeII	GATC	2 cut(s)	131, 285
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	346
PctI	GAATGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	131, 285
RsaI	GTAC	2 cut(s)	20, 395
RsaNI	GTAC	2 cut(s)	19, 394
SaqAI	TTAA	5 cut(s)	191, 201, 243, 267, 406
Sau3AI	GATC	2 cut(s)	131, 285
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	380
SetI	ASST	4 cut(s)	226, 267, 322, 402
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	2 cut(s)	240, 388
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	281, 375
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	91
TasI	AATT	2 cut(s)	240, 388
TatI	WGTACW	2 cut(s)	18, 393
Tru1I	TTAA	5 cut(s)	191, 201, 243, 267, 406
Tru9I	TTAA	5 cut(s)	191, 201, 243, 267, 406
TscAI	CASTG	2 cut(s)	96, 148
TspDTI	ATGAA	2 cut(s)	38, 284
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	2 cut(s)	96, 148
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	388
XbaI	TCTAGA	1 cut(s)	280
XspI	CTAG	2 cut(s)	281, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.