Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

86194765 .. 86195390

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGCCAGAGTACGCCTTTTGGGGCTATTTAACCGATAAGGCAGATGTTTACAGTTTTGGGGTTGTTGCATTGGAGCTTGTATCAGGGAAAAACAACATCAAATATCGGCCAAACGAAAATTTTGTATGCCTTCTAGATTGGGTAAGATCTTCCTTATATCAATTAGTAGAACATAAAATGGCTTCTTATTTTCTAGCTGGCCCTTGTTTTGCAACAAAAGGAGACCTAATGGAGCTGGTGGATCCAAAGTTGAATGCTGGGTTCAACAAGGAAGAGGCACTTAGAATGATAAATTTAGCTCTACTATGTGCCAACTCATCACCAGCACTAAGACCCACGATGTCTGAAGTAGTGAGCATGCTTGAAGGCCGAACTGTTGTTCATGAAGTGACTATAAATCCAAGTATTTATGATGATGAAATGAGGTTTGAGGCCTTTACAGAGGACTCTGATCCGAATATGCAAGAGAGCTTTCAGGAGACTCGAAGCTTGATTCACTCCAATTCAAAATGGACGGCCTCTTCCTCATCGTCAGTCCTGAATATTGATACAGTTAAACTTGGGACTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

191

Amino Acids

21.47

Weight (kDa)

4.9

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	3 cut(s)	239, 252, 449
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	121, 295
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	14
AgsI	TTSAA	4 cut(s)	256, 268, 368, 510
AluBI	AGCT	6 cut(s)	79, 200, 238, 302, 474, 492
AluI	AGCT	6 cut(s)	79, 200, 238, 302, 474, 492
Alw26I	GTCTC	2 cut(s)	219, 476
AlwI	GGATC	3 cut(s)	239, 252, 449
AoxI	GGCC	5 cut(s)	110, 202, 370, 435, 519
ApoI	RAATTY	2 cut(s)	121, 295
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	219, 476
BfaI	CTAG	2 cut(s)	137, 197
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	2 cut(s)	6, 246
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	219
BseYI	CCCAGC	1 cut(s)	260
BshFI	GGCC	5 cut(s)	112, 204, 372, 437, 521
BshNI	GGYRCC	1 cut(s)	4
BsmAI	GTCTC	2 cut(s)	219, 476
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	5 cut(s)	112, 204, 372, 437, 521
Bso31I	GGTCTC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	149, 244, 454
BspANI	GGCC	5 cut(s)	112, 204, 372, 437, 521
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	6, 246
BspPI	GGATC	3 cut(s)	239, 252, 449
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	219
BssMI	GATC	3 cut(s)	149, 244, 454
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	3 cut(s)	56, 379, 556
Bst6I	CTCTTC	2 cut(s)	270, 529
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	202, 362
BstDEI	CTNAG	2 cut(s)	284, 332
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	152, 247, 457
BstMAI	GTCTC	2 cut(s)	219, 476
BstMBI	GATC	3 cut(s)	149, 244, 454
BstNSI	RCATGY	1 cut(s)	364
BstX2I	RGATCY	2 cut(s)	149, 244
BstYI	RGATCY	2 cut(s)	149, 244
BsuRI	GGCC	5 cut(s)	112, 204, 372, 437, 521
Cac8I	GCNNGC	2 cut(s)	202, 362
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	361, 386
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	2 cut(s)	284, 332
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	151, 246, 456
DpnII	GATC	3 cut(s)	149, 244, 454
EaeI	YGGCCR	1 cut(s)	110
Eam1104I	CTCTTC	2 cut(s)	270, 529
EarI	CTCTTC	2 cut(s)	270, 529
Eco147I	AGGCCT	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	369
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	2 cut(s)	364, 389
FaiI	YATR	9 cut(s)	130, 160, 177, 310, 362, 387, 398, 414, 464
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	2 cut(s)	360, 385
FspBI	CTAG	2 cut(s)	137, 197
GlaI	GCGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	112, 204, 372, 437, 521
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	364, 389
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	4 cut(s)	449, 484, 496, 568
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	349, 454, 459
Hpy188III	TCNNGA	4 cut(s)	137, 386, 479, 541
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	143, 362
HpyCH4III	ACNGT	3 cut(s)	56, 379, 556
HpyCH4V	TGCA	3 cut(s)	71, 215, 466
HpyF3I	CTNAG	2 cut(s)	284, 332
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	364, 389
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	149, 244, 454
LmnI	GCTCC	2 cut(s)	76, 235
LpnPI	CCDG	8 cut(s)	21, 72, 186, 224, 246, 339, 464, 554
MaeI	CTAG	2 cut(s)	137, 197
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	3 cut(s)	151, 246, 456
MboI	GATC	3 cut(s)	149, 244, 454
MboII	GAAGA	3 cut(s)	144, 287, 516
MflI	RGATCY	2 cut(s)	149, 244
MluCI	AATT	4 cut(s)	121, 164, 295, 505
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	443, 478, 562
MnlI	CCTC	6 cut(s)	271, 420, 427, 439, 532, 538
MseI	TTAA	2 cut(s)	32, 558
Mva1269I	GAATGC	1 cut(s)	262
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	149, 244, 454
NlaIII	CATG	2 cut(s)	364, 389
NlaIV	GGNNCC	2 cut(s)	6, 246
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	1 cut(s)	364
PaeI	GCATGC	1 cut(s)	364
PagI	TCATGA	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	437
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	496
PleI	GAGTC	3 cut(s)	443, 478, 562
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	443, 478, 562
PspFI	CCCAGC	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	6, 246
PspPI	GGNCC	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	149, 244
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	32, 558
Sau3AI	GATC	3 cut(s)	149, 244, 454
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	3 cut(s)	443, 478, 562
SetI	ASST	8 cut(s)	81, 202, 231, 240, 304, 431, 476, 494
SfoI	GGCGCC	1 cut(s)	6
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	4 cut(s)	121, 164, 295, 505
SseBI	AGGCCT	1 cut(s)	437
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	2 cut(s)	137, 197
StuI	AGGCCT	1 cut(s)	437
TaaI	ACNGT	3 cut(s)	56, 379, 556
TaqI	TCGA	2 cut(s)	487, 571
TasI	AATT	4 cut(s)	121, 164, 295, 505
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	2 cut(s)	32, 558
Tru9I	TTAA	2 cut(s)	32, 558
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	3 cut(s)	374, 402, 435
XapI	RAATTY	2 cut(s)	121, 295
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	2 cut(s)	137, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.