MD05G1294500.v1.1

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
42690669 .. 42691986
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1294500.v1.1.491

Sequence Viewer

Length: 771 bp
ATGGCTTTCGTCACCCTCGGGGTCGGGGCGTGTCAATTAATTTCAGACCCAGAGGAAGGCCTAAAGAAATTGGACTGGAATACGAGGCATAAAATATGTCTTGGCATTGCAAGAGGTCTGGCTTTCCTGCATGAGGAGTCGACCCTGAAAATTGTTCATAGAGACATCAAAACAACCAATATACTGCTTGATCGGGACCTTAACCCTAAGATATCTGACTTTGGTTTGGCTAAGCTGAACGAAGAGGAGAACACCCATATTAGCACCAGAGTCGCTGGAACTATAGGATATATGGCACCAGAATATGCGTTATGGGGTTATTTAAGTGACAAAGCAGATGTTTACAGTTTTGGGGTCGTTGCATTGGAACTCTTATCTGGAAAAAACAACATCAAATATCGTCCAAATGAGAATTTTGTATGCCTTCTTGATTGGGCCCTTGTTTTGCAACAAAAAGGAAATCTGATGGAGCTGGTGGATCGAAAGTTGGGGTCTGAGTTCAATAAGGAAGAGGCAATGAGAATGATAAAGGTAGCTCTACTATGCGCCAATCCATCACCGGCACTAAGACCTACAATGTCCGCAGTAGTGAGCATGCTTGAAGGCCAAACTCTTGTTCACGAGGTGAAGATAAACCCGAGTATTTATGGTGACGAGATGAGGTTTAGGGACTTCACAGAGGACCCTGATACTACTACTGAAGAGAGCACGCAAAGCTTACTTTATTCATCCGATACAAAATGGACCGCCTCTACCTCATCGTCTGCCTAG

Protein Analysis

257

Amino Acids

28.58

Weight (kDa)

5.23

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 22 - 200 1.3e-25 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 26 - 197 6.9e-27 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AccI GTMKAC 1 cut(s) 140
AciI CCGC 2 cut(s) 582, 747
AclWI GGATC 1 cut(s) 486
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 720
AdeI CACNNNGTG 1 cut(s) 625
AfiI CCNNNNNNNGG 2 cut(s) 56, 133
AgsI TTSAA 2 cut(s) 502, 602
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
AluBI AGCT 4 cut(s) 235, 472, 536, 717
AluI AGCT 4 cut(s) 235, 472, 536, 717
Alw21I GWGCWC 1 cut(s) 710
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 1 cut(s) 486
Ama87I CYCGRG 2 cut(s) 17, 637
AoxI GGCC 3 cut(s) 58, 435, 604
ApaI GGGCCC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 412
AseI ATTAAT 1 cut(s) 38
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 5 cut(s) 196, 435, 436, 682, 744
AsuHPI GGTGA 4 cut(s) 4, 549, 637, 662
AvaI CYCGRG 2 cut(s) 17, 637
AvaII GGWCC 3 cut(s) 196, 682, 744
BaeGI GKGCMC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 439
BauI CACGAG 1 cut(s) 620
Bbv12I GWGCWC 1 cut(s) 710
BccI CCATC 2 cut(s) 460, 562
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 769
BfmI CTRYAG 1 cut(s) 282
BlpI GCTNAGC 1 cut(s) 231
Bme18I GGWCC 3 cut(s) 196, 682, 744
BmeT110I CYCGRG 2 cut(s) 17, 637
BmgT120I GGNCC 5 cut(s) 196, 435, 436, 682, 744
BmiI GGNNCC 4 cut(s) 197, 297, 437, 684
Bpu1102I GCTNAGC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 133
Bse118I RCCGGY 1 cut(s) 559
Bse1I ACTGG 1 cut(s) 80
Bse3DI GCAATG 2 cut(s) 105, 522
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 728
BseLI CCNNNNNNNGG 2 cut(s) 56, 133
BseMI GCAATG 2 cut(s) 105, 522
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 2 cut(s) 149, 260
BseSI GKGCMC 1 cut(s) 439
BshFI GGCC 3 cut(s) 60, 437, 606
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 710
BsiHKCI CYCGRG 2 cut(s) 17, 637
BsiSI CCGG 1 cut(s) 560
BslFI GGGAC 2 cut(s) 209, 683
BslI CCNNNNNNNGG 2 cut(s) 56, 133
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 209, 683
BsnI GGCC 3 cut(s) 60, 437, 606
BsoBI CYCGRG 2 cut(s) 17, 637
Bsp120I GGGCCC 1 cut(s) 435
Bsp1286I GDGCHC 2 cut(s) 439, 710
Bsp143I GATC 2 cut(s) 190, 478
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 2 cut(s) 582, 747
BspANI GGCC 3 cut(s) 60, 437, 606
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 4 cut(s) 197, 297, 437, 684
BspPI GGATC 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 295
BsrDI GCAATG 2 cut(s) 105, 522
BsrFI RCCGGY 1 cut(s) 559
BsrI ACTGG 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 190, 478
BssSI CACGAG 1 cut(s) 620
Bst2BI CACGAG 1 cut(s) 620
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 3 cut(s) 237, 504, 696
BstC8I GCNNGC 2 cut(s) 596, 710
BstDEI CTNAG 4 cut(s) 207, 231, 495, 566
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 728
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 2 cut(s) 193, 481
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 190, 478
BstMWI GCNNNNNNNGC 1 cut(s) 714
BstNSI RCATGY 1 cut(s) 598
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 439
BsuRI GGCC 3 cut(s) 60, 437, 606
BtsCI GGATG 1 cut(s) 728
Cac8I GCNNGC 2 cut(s) 596, 710
CfoI GCGC 1 cut(s) 548
Cfr10I RCCGGY 1 cut(s) 559
Cfr13I GGNCC 5 cut(s) 196, 435, 436, 682, 744
CviAII CATG 2 cut(s) 131, 595
DdeI CTNAG 4 cut(s) 207, 231, 495, 566
DpnI GATC 2 cut(s) 192, 480
DpnII GATC 2 cut(s) 190, 478
DraIII CACNNNGTG 1 cut(s) 625
Eam1104I CTCTTC 3 cut(s) 237, 504, 696
EarI CTCTTC 3 cut(s) 237, 504, 696
Eco147I AGGCCT 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 439
Eco32I GATATC 1 cut(s) 213
Eco47I GGWCC 3 cut(s) 196, 682, 744
Eco57I CTGAAG 1 cut(s) 720
Eco88I CYCGRG 2 cut(s) 17, 637
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoO109I RGGNCCY 3 cut(s) 196, 436, 682
EcoRV GATATC 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 439
FaeI CATG 2 cut(s) 134, 598
FaqI GGGAC 2 cut(s) 209, 683
FatI CATG 2 cut(s) 130, 594
FblI GTMKAC 1 cut(s) 140
FokI GGATG 1 cut(s) 715
FriOI GRGCYC 1 cut(s) 439
FspBI CTAG 1 cut(s) 769
GlaI GCGC 1 cut(s) 547
HaeIII GGCC 3 cut(s) 60, 437, 606
HapII CCGG 1 cut(s) 560
HhaI GCGC 1 cut(s) 548
Hin1II CATG 2 cut(s) 134, 598
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 715
HinfI GANTC 2 cut(s) 137, 270
HpaII CCGG 1 cut(s) 560
HphI GGTGA 4 cut(s) 4, 549, 637, 662
Hpy166II GTNNAC 3 cut(s) 141, 343, 619
Hpy188I TCNGA 5 cut(s) 46, 217, 465, 496, 733
Hpy188III TCNNGA 4 cut(s) 194, 378, 428, 620
Hpy8I GTNNAC 3 cut(s) 141, 343, 619
HpyAV CCTTC 3 cut(s) 50, 434, 596
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4V TGCA 4 cut(s) 110, 130, 362, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 714
HpyF3I CTNAG 4 cut(s) 207, 231, 495, 566
Hsp92II CATG 2 cut(s) 134, 598
HspAI GCGC 1 cut(s) 546
Kzo9I GATC 2 cut(s) 190, 478
LmnI GCTCC 1 cut(s) 469
MaeI CTAG 1 cut(s) 769
MaeIII GTNAC 3 cut(s) 10, 326, 650
MalI GATC 2 cut(s) 192, 480
MboI GATC 2 cut(s) 190, 478
MboII GAAGA 4 cut(s) 254, 521, 640, 713
MhlI GDGCHC 2 cut(s) 439, 710
MluCI AATT 5 cut(s) 35, 39, 68, 150, 412
MlyI GAGTC 2 cut(s) 146, 279
MseI TTAA 3 cut(s) 38, 201, 323
MspI CCGG 1 cut(s) 560
MwoI GCNNNNNNNGC 1 cut(s) 714
NdeII GATC 2 cut(s) 190, 478
NlaIII CATG 2 cut(s) 134, 598
NlaIV GGNNCC 4 cut(s) 197, 297, 437, 684
NmuCI GTSAC 3 cut(s) 10, 326, 650
NspI RCATGY 1 cut(s) 598
PaeI GCATGC 1 cut(s) 598
PceI AGGCCT 1 cut(s) 60
PleI GAGTC 2 cut(s) 145, 278
PpsI GAGTC 2 cut(s) 145, 278
PpuMI RGGWCCY 2 cut(s) 196, 682
PshBI ATTAAT 1 cut(s) 38
Psp5II RGGWCCY 2 cut(s) 196, 682
PspN4I GGNNCC 4 cut(s) 197, 297, 437, 684
PspOMI GGGCCC 1 cut(s) 435
PspPI GGNCC 5 cut(s) 196, 435, 436, 682, 744
PspPPI RGGWCCY 2 cut(s) 196, 682
SalI GTCGAC 1 cut(s) 139
SaqAI TTAA 3 cut(s) 38, 201, 323
Sau3AI GATC 2 cut(s) 190, 478
Sau96I GGNCC 5 cut(s) 196, 435, 436, 682, 744
SchI GAGTC 2 cut(s) 146, 279
SduI GDGCHC 2 cut(s) 439, 710
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 3 cut(s) 196, 682, 744
SphI GCATGC 1 cut(s) 598
Sse9I AATT 5 cut(s) 35, 39, 68, 150, 412
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 2 cut(s) 582, 747
SspMI CTAG 1 cut(s) 769
StuI AGGCCT 1 cut(s) 60
TaaI ACNGT 1 cut(s) 347
TaqI TCGA 2 cut(s) 140, 481
TasI AATT 5 cut(s) 35, 39, 68, 150, 412
Tru1I TTAA 3 cut(s) 38, 201, 323
Tru9I TTAA 3 cut(s) 38, 201, 323
TseFI GTSAC 3 cut(s) 10, 326, 650
Tsp45I GTSAC 3 cut(s) 10, 326, 650
TspDTI ATGAA 2 cut(s) 146, 717
VpaK11BI GGWCC 3 cut(s) 196, 682, 744
VspI ATTAAT 1 cut(s) 38
XagI CCTNNNNNAGG 1 cut(s) 131
XapI RAATTY 1 cut(s) 412
XceI RCATGY 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 140
XspI CTAG 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.