Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

3990392 .. 3991292

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGGTTGTTTGACCTACGTGTCTACAGTTTTGGAGTTGTTGCATTAGAAACTGTTTCAGGAAAGAACATGAAATATCGACCGAATGAGAACATTCAATGTCTTATGGATTGGGCTCTTGTTTTGCAACAAAAAGGGGACTTACTGGAGCTGGTGGATCCAAGGTTGGGATCCGATTTCAATAAGAAAGAGGCGCTTAGAACTATCAAAGTAGCTCTGCTGTGCGCCAATCCAACAGCTGCACTCAAGCCTATCATGTCTGCAGTAGTGAGTATGCTTGAAGGGCGAACCCCAGTGGATGAAGTGGCTTTGGATCCAAGTATCCATGGTGATGAAATGACGAGGTTAAGAGCCTTTGAAAACCTGTCTGAGCAGAATGCACAAGGGAGCTCACCAAGTGGAAGTCACAGCCTCGTGCGTTCATCAGATGCAATGGATTGGTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

150

Amino Acids

16.46

Weight (kDa)

5.15

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	24
AclWI	GGATC	6 cut(s)	152, 165, 165, 178, 308, 321
AdeI	CACNNNGTG	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	98, 181, 281, 359
AluBI	AGCT	4 cut(s)	151, 215, 239, 390
AluI	AGCT	4 cut(s)	151, 215, 239, 390
Alw21I	GWGCWC	1 cut(s)	392
AlwI	GGATC	6 cut(s)	152, 165, 165, 178, 308, 321
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	196, 227
AsuHPI	GGTGA	2 cut(s)	341, 384
BamHI	GGATCC	3 cut(s)	157, 170, 313
BanII	GRGCYC	2 cut(s)	118, 392
BauI	CACGAG	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	25, 261
BfoI	RGCGCY	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
BmiI	GGNNCC	3 cut(s)	159, 172, 315
BmrI	ACTGGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	161, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	150, 293
Bse3DI	GCAATG	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	161, 325
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	150, 293
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	118, 392
Bsp143I	GATC	3 cut(s)	157, 170, 313
Bsp19I	CCATGG	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	159, 172, 315
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	6 cut(s)	152, 165, 165, 178, 308, 321
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	150, 293
BssECI	CCNNGG	2 cut(s)	161, 325
BssMI	GATC	3 cut(s)	157, 170, 313
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	2 cut(s)	161, 325
Bst2BI	CACGAG	1 cut(s)	413
Bst4CI	ACNGT	2 cut(s)	29, 55
BstBAI	YACGTR	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	197, 369
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	304
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	2 cut(s)	196, 227
BstKTI	GATC	3 cut(s)	160, 173, 316
BstMBI	GATC	3 cut(s)	157, 170, 313
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstSFI	CTRYAG	2 cut(s)	25, 261
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	3 cut(s)	157, 170, 313
BstYI	RGATCY	3 cut(s)	157, 170, 313
BsuI	GTATCC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	300
CfoI	GCGC	2 cut(s)	196, 227
CviAII	CATG	3 cut(s)	70, 256, 326
CviJI	RGCY	9 cut(s)	116, 151, 215, 239, 250, 308, 353, 390, 411
CviKI_1	RGCY	9 cut(s)	116, 151, 215, 239, 250, 308, 353, 390, 411
DdeI	CTNAG	2 cut(s)	197, 369
DpnI	GATC	3 cut(s)	159, 172, 315
DpnII	GATC	3 cut(s)	157, 170, 313
DraIII	CACNNNGTG	1 cut(s)	398
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	161, 325
Eco24I	GRGCYC	2 cut(s)	118, 392
Eco53kI	GAGCTC	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	390
EcoT14I	CCWWGG	2 cut(s)	161, 325
EcoT38I	GRGCYC	2 cut(s)	118, 392
ErhI	CCWWGG	2 cut(s)	161, 325
FaeI	CATG	3 cut(s)	73, 259, 329
FaiI	YATR	5 cut(s)	71, 107, 257, 275, 327
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	3 cut(s)	69, 255, 325
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	2 cut(s)	118, 392
Fsp4HI	GCNGC	1 cut(s)	240
GlaI	GCGC	2 cut(s)	195, 226
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	197
HhaI	GCGC	2 cut(s)	196, 227
Hin1II	CATG	3 cut(s)	73, 259, 329
Hin6I	GCGC	2 cut(s)	194, 225
HinP1I	GCGC	2 cut(s)	194, 225
HphI	GGTGA	2 cut(s)	341, 384
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	4 cut(s)	175, 370, 427, 449
Hpy188III	TCNNGA	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	2 cut(s)	29, 55
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	6 cut(s)	44, 127, 242, 263, 380, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	197, 369
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	73, 259, 329
HspAI	GCGC	2 cut(s)	194, 225
Kzo9I	GATC	3 cut(s)	157, 170, 313
LmnI	GCTCC	2 cut(s)	148, 387
LpnPI	CCDG	5 cut(s)	45, 131, 137, 306, 377
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	3 cut(s)	159, 172, 315
MboI	GATC	3 cut(s)	157, 170, 313
MboII	GAAGA	1 cut(s)	436
MflI	RGATCY	3 cut(s)	157, 170, 313
MhlI	GDGCHC	2 cut(s)	118, 392
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	184, 336, 422
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	3 cut(s)	157, 170, 313
NlaIII	CATG	3 cut(s)	73, 259, 329
NlaIV	GGNNCC	3 cut(s)	159, 172, 315
NmuCI	GTSAC	1 cut(s)	404
PctI	GAATGC	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	20
Psp124BI	GAGCTC	1 cut(s)	392
PspN4I	GGNNCC	3 cut(s)	159, 172, 315
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	3 cut(s)	157, 170, 313
PvuII	CAGCTG	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	330
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	3 cut(s)	157, 170, 313
SduI	GDGCHC	2 cut(s)	118, 392
SetI	ASST	9 cut(s)	18, 22, 153, 167, 217, 241, 347, 366, 392
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	25, 261
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SstI	GAGCTC	1 cut(s)	392
StyI	CCWWGG	2 cut(s)	161, 325
TaaI	ACNGT	2 cut(s)	29, 55
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	79
TaqII	GACCGA	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	4 cut(s)	86, 315, 348, 411
TspRI	CASTG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.