RchiOBHm_Chr5g0080321

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
86286053 .. 86287745
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35464

Sequence Viewer

Length: 825 bp
ATGACCATTTTTATAAATTTGAAGCTTTACTTTTCGGAGATTATAATCAGAGGCAATAGATCTTTTTCTAGTCTTGGAAGACGGATATTCGATGTTTATATTCAGGAGAAGTTAGTGTTGAACGATTTCGACATTGAAAAGGATGCCCAAGGGGTTGATAAGCCAGTCATCTGGGAATTTAAAGCAGTTGAGGTTAAGAAGAAAACTTTAGAGATCCGATTTCATTGGTCTGGGAAAGGGACAACAGCTTCCCCAAACAGAGGAGTATATGGTCCCCTTATTTCAGCTCTCTCTATAGAATCAGAGTTCAAGCCTCCTCATGATAGCAAGACATGGGTATTTATTGTGGTGGGAGCTTCGGTTTTGTGCCTCATTCTGTTGATTTTAAGCATTTTTTGGTGGAGAGGCTGTCTGGATAAGAAGACATCAAGAGAAGAAGCTCTGAGAGGACTGGATCTGCAAACTGGCTTTTTCACCTTCAAGCAAATAAAAGCTGCCACTAATAACTTTGATCCTGTAAACAAAATTGGGGAAGGTGGTTTTGGATCTGTGTACAAGGGAATACTACTGGATGGTACTATAATTGCAGTAAAGCAATTATCTGCAAAATCAAAGCAAGGAAATCGAGAATTTGTGAACGAAATAGGCATGATTTCTGGTTTACAGCATCCAAATGTCGTGAGATTGTATGGATGTTGTATTGAAGCAAATCAGTTACTTTTGGTATATGAATACATGGAGAACAATAGCCTTGCACATGCTTTGTTTGGTAAGCTTATCATGCCTAGGAACAATATTGAAATCATGTATTACAAACTGTACTAA

Protein Analysis

274

Amino Acids

31.13

Weight (kDa)

9.12

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 7 - 97 1.2e-18 Malectin domain
Pkinase PF00069 173 - 269 4.3e-18 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 174 - 255 5.2e-18 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 14, 44
AclWI GGATC 4 cut(s) 208, 462, 506, 553
AcsI RAATTY 3 cut(s) 16, 176, 629
AfaI GTAC 3 cut(s) 554, 577, 821
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 7 cut(s) 22, 121, 137, 310, 481, 704, 800
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 7 cut(s) 25, 248, 287, 356, 440, 494, 775
AluI AGCT 7 cut(s) 25, 248, 287, 356, 440, 494, 775
AlwI GGATC 4 cut(s) 208, 462, 506, 553
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 3 cut(s) 16, 176, 629
Asp700I GAANNNNTTC 1 cut(s) 125
AspA2I CCTAGG 1 cut(s) 785
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 466
AvaII GGWCC 1 cut(s) 272
AvrII CCTAGG 1 cut(s) 785
BbsI GAAGAC 2 cut(s) 85, 428
BbvI GCAGC 1 cut(s) 481
BccI CCATC 1 cut(s) 566
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BfaI CTAG 2 cut(s) 69, 786
BfmI CTRYAG 1 cut(s) 294
BglII AGATCT 1 cut(s) 59
BisI GCNGC 1 cut(s) 495
BlnI CCTAGG 1 cut(s) 785
BlsI GCNGC 1 cut(s) 496
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 274
BmsI GCATC 2 cut(s) 133, 676
BpiI GAAGAC 2 cut(s) 85, 428
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 148, 785
BsaXI ACNNNNNCTCC 4 cut(s) 345, 375, 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 4 cut(s) 164, 456, 469, 573
Bse8I GATNNNNATC 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 148, 785
BseGI GGATG 4 cut(s) 148, 577, 667, 698
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 4 cut(s) 164, 456, 469, 573
BseRI GAGGAG 2 cut(s) 276, 306
BseXI GCAGC 1 cut(s) 481
BslFI GGGAC 2 cut(s) 253, 258
BslI CCNNNNNNNGG 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 253, 258
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 5 cut(s) 59, 213, 454, 511, 545
BspCNI CTCAG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 4 cut(s) 208, 462, 506, 553
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 4 cut(s) 164, 456, 469, 573
BssECI CCNNGG 2 cut(s) 148, 785
BssMI GATC 5 cut(s) 59, 213, 454, 511, 545
BssT1I CCWWGG 2 cut(s) 148, 785
Bst4CI ACNGT 1 cut(s) 819
BstAUI TGTACA 1 cut(s) 552
BstDEI CTNAG 1 cut(s) 443
BstF5I GGATG 4 cut(s) 148, 577, 667, 698
BstKTI GATC 5 cut(s) 62, 216, 457, 514, 548
BstMBI GATC 5 cut(s) 59, 213, 454, 511, 545
BstMWI GCNNNNNNNGC 1 cut(s) 781
BstNSI RCATGY 1 cut(s) 761
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 481
BstV2I GAAGAC 2 cut(s) 85, 428
BstX2I RGATCY 4 cut(s) 59, 213, 454, 545
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 4 cut(s) 59, 213, 454, 545
BtsCI GGATG 4 cut(s) 148, 577, 667, 698
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 553, 576, 820
CviAII CATG 7 cut(s) 320, 333, 649, 736, 758, 781, 805
CviQI GTAC 3 cut(s) 553, 576, 820
DdeI CTNAG 1 cut(s) 443
DpnI GATC 5 cut(s) 61, 215, 456, 513, 547
DpnII GATC 5 cut(s) 59, 213, 454, 511, 545
DraI TTTAAA 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 148, 785
Eco47I GGWCC 1 cut(s) 272
EcoT14I CCWWGG 2 cut(s) 148, 785
ErhI CCWWGG 2 cut(s) 148, 785
FaeI CATG 7 cut(s) 323, 336, 652, 739, 761, 784, 808
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 2 cut(s) 253, 258
FatI CATG 7 cut(s) 319, 332, 648, 735, 757, 780, 804
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 4 cut(s) 155, 584, 654, 705
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 2 cut(s) 69, 786
GluI GCNGC 1 cut(s) 495
Hin1II CATG 7 cut(s) 323, 336, 652, 739, 761, 784, 808
HindIII AAGCTT 2 cut(s) 23, 773
HinfI GANTC 1 cut(s) 299
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 4 cut(s) 520, 553, 637, 662
Hpy188I TCNGA 5 cut(s) 37, 50, 218, 304, 444
Hpy188III TCNNGA 6 cut(s) 104, 320, 413, 429, 626, 679
Hpy8I GTNNAC 4 cut(s) 520, 553, 637, 662
HpyAV CCTTC 2 cut(s) 487, 527
HpyCH4III ACNGT 1 cut(s) 819
HpyCH4V TGCA 4 cut(s) 460, 587, 605, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 781
HpyF3I CTNAG 1 cut(s) 443
Hsp92II CATG 7 cut(s) 323, 336, 652, 739, 761, 784, 808
Kzo9I GATC 5 cut(s) 59, 213, 454, 511, 545
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 2 cut(s) 133, 676
MaeI CTAG 2 cut(s) 69, 786
MaeIII GTNAC 1 cut(s) 714
MalI GATC 5 cut(s) 61, 215, 456, 513, 547
MboI GATC 5 cut(s) 59, 213, 454, 511, 545
MboII GAAGA 4 cut(s) 90, 211, 433, 446
MflI RGATCY 4 cut(s) 59, 213, 454, 545
MluCI AATT 6 cut(s) 16, 176, 525, 582, 596, 629
MnlI CCTC 8 cut(s) 44, 184, 254, 324, 327, 380, 398, 440
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 3 cut(s) 180, 195, 386
MslI CAYNNNNRTG 1 cut(s) 672
MwoI GCNNNNNNNGC 1 cut(s) 781
NdeII GATC 5 cut(s) 59, 213, 454, 511, 545
NlaIII CATG 7 cut(s) 323, 336, 652, 739, 761, 784, 808
NlaIV GGNNCC 1 cut(s) 274
NspI RCATGY 1 cut(s) 761
PagI TCATGA 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 496
PsiI TTATAA 2 cut(s) 14, 44
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 4 cut(s) 59, 213, 454, 545
RsaI GTAC 3 cut(s) 554, 577, 821
RsaNI GTAC 3 cut(s) 553, 576, 820
RseI CAYNNNNRTG 1 cut(s) 672
SaqAI TTAA 3 cut(s) 180, 195, 386
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 5 cut(s) 59, 213, 454, 511, 545
Sau96I GGNCC 1 cut(s) 272
SfaNI GCATC 2 cut(s) 133, 676
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 672
Sse9I AATT 6 cut(s) 16, 176, 525, 582, 596, 629
SspI AATATT 1 cut(s) 796
SspMI CTAG 2 cut(s) 69, 786
StyI CCWWGG 2 cut(s) 148, 785
TaaI ACNGT 1 cut(s) 819
TaqI TCGA 3 cut(s) 90, 129, 625
TasI AATT 6 cut(s) 16, 176, 525, 582, 596, 629
TatI WGTACW 2 cut(s) 552, 819
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 3 cut(s) 180, 195, 386
Tru9I TTAA 3 cut(s) 180, 195, 386
TseI GCWGC 1 cut(s) 494
TspDTI ATGAA 2 cut(s) 212, 744
TspGWI ACGGA 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 3 cut(s) 16, 176, 629
XceI RCATGY 1 cut(s) 761
XmaJI CCTAGG 1 cut(s) 785
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 2 cut(s) 69, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.