Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

50758575 .. 50758931

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG387000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATGGAGCTAGTGGATCCAAATTTGGGATCCGAGTTCAACAAGGAAGAAGCAATGAGAATGATCAAAGTAGCACTGCTCTGCACTAATCCATCTCCAGCACTGAGACCTACAATGTCTGCAGCACTAAGCATGCTTGAAGGCCGAGCCGTTATTCATGAATCAAGTATGAGTTCAAGTATGTATGGTGATGAACTAGGCTTCAAGGCCTTTAGAGATGAGCATCAGGAAGTGAATATTCAACAGAGCCCAGGTGAAACTCGGAGCCTCATTTATTCATCCAATGCCAAAGGCCAAGATGCCTCTTCCTCAAGGACTGTCCAGGATAGCTATACATTTAATCTTGATTCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

118

Amino Acids

13.0

Weight (kDa)

4.79

Isoelectric Point (pI)

72.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	11, 24, 24, 37
AcsI	RAATTY	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	5 cut(s)	40, 140, 177, 205, 242
AjnI	CCWGG	2 cut(s)	250, 321
AluBI	AGCT	2 cut(s)	10, 330
AluI	AGCT	2 cut(s)	10, 330
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	4 cut(s)	11, 24, 24, 37
AoxI	GGCC	3 cut(s)	142, 207, 292
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	200, 266
BamHI	GGATCC	2 cut(s)	16, 29
BanII	GRGCYC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	2 cut(s)	252, 323
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	11, 197
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	252, 323
BmiI	GGNNCC	3 cut(s)	18, 31, 266
BmrFI	CCNGG	2 cut(s)	252, 323
BmsI	GCATC	2 cut(s)	232, 289
BpmI	CTGGAG	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	252, 323
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	278
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	144, 209, 294
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	144, 209, 294
Bso31I	GGTCTC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	16, 29, 63
BspANI	GGCC	3 cut(s)	144, 209, 294
BspCNI	CTCAG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	3 cut(s)	18, 31, 266
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	4 cut(s)	11, 24, 24, 37
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	3 cut(s)	16, 29, 63
Bst2UI	CCWGG	2 cut(s)	252, 323
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	104, 128
BstF5I	GGATG	1 cut(s)	278
BstKTI	GATC	3 cut(s)	19, 32, 66
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	3 cut(s)	16, 29, 63
BstNI	CCWGG	2 cut(s)	252, 323
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	250, 321
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	16, 29
BstYI	RGATCY	2 cut(s)	16, 29
BsuRI	GGCC	3 cut(s)	144, 209, 294
BtsCI	GGATG	1 cut(s)	278
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	74, 101
Cac8I	GCNNGC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	157
CviAII	CATG	2 cut(s)	133, 158
CviJI	RGCY	9 cut(s)	10, 144, 149, 201, 209, 249, 267, 294, 330
CviKI_1	RGCY	9 cut(s)	10, 144, 149, 201, 209, 249, 267, 294, 330
DdeI	CTNAG	2 cut(s)	104, 128
DpnI	GATC	3 cut(s)	18, 31, 65
DpnII	GATC	3 cut(s)	16, 29, 63
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	250, 321
EcoT38I	GRGCYC	1 cut(s)	251
FaeI	CATG	2 cut(s)	136, 161
FaiI	YATR	7 cut(s)	134, 159, 170, 182, 186, 333, 355
FatI	CATG	2 cut(s)	132, 157
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	265
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	11, 197
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	144, 209, 294
Hin1II	CATG	2 cut(s)	136, 161
HinfI	GANTC	2 cut(s)	161, 347
HphI	GGTGA	2 cut(s)	200, 266
Hpy188I	TCNGA	2 cut(s)	34, 264
Hpy188III	TCNNGA	3 cut(s)	158, 227, 344
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	84, 122
HpyF3I	CTNAG	2 cut(s)	104, 128
Hsp92II	CATG	2 cut(s)	136, 161
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	16, 29, 63
LmnI	GCTCC	2 cut(s)	7, 264
LpnPI	CCDG	6 cut(s)	111, 212, 237, 264, 308, 335
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	2 cut(s)	232, 289
MaeI	CTAG	2 cut(s)	11, 197
MalI	GATC	3 cut(s)	18, 31, 65
MboI	GATC	3 cut(s)	16, 29, 63
MboII	GAAGA	2 cut(s)	59, 297
MflI	RGATCY	2 cut(s)	16, 29
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	1 cut(s)	22
MnlI	CCTC	3 cut(s)	278, 313, 319
MseI	TTAA	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	252, 323
MvaI	CCWGG	2 cut(s)	252, 323
NdeII	GATC	3 cut(s)	16, 29, 63
NlaIII	CATG	2 cut(s)	136, 161
NlaIV	GGNNCC	3 cut(s)	18, 31, 266
NmeAIII	GCCGAG	1 cut(s)	170
NspI	RCATGY	1 cut(s)	136
PaeI	GCATGC	1 cut(s)	136
PagI	TCATGA	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	161, 347
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	250, 321
PspGI	CCWGG	2 cut(s)	250, 321
PspN4I	GGNNCC	3 cut(s)	18, 31, 266
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	16, 29
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	3 cut(s)	16, 29, 63
ScrFI	CCNGG	2 cut(s)	252, 323
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	4 cut(s)	12, 112, 256, 332
SfaNI	GCATC	2 cut(s)	232, 289
SfcI	CTRYAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	1 cut(s)	22
SseBI	AGGCCT	1 cut(s)	209
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	2 cut(s)	11, 197
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	250, 321
TaaI	ACNGT	1 cut(s)	319
TasI	AATT	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	161, 347
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	81, 108
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	4 cut(s)	146, 174, 207, 267
TspRI	CASTG	2 cut(s)	81, 108
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	136
XspI	CTAG	2 cut(s)	11, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.