Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8328697.1

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

225 .. 842

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8328697.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggcaccggaatatgctctatggggttgtttgacctttaaagcagatgtttacagttttggagtcgttgcattagaaactgttacaggaaagaacaacatgaaatatcgacccaatgagaacattcaatgtcttatggattgggctcttgttttgcaacaaagagggaacttactggagctggtggatccgaggttggggtccgatttcaataagaaagaggcgattagaacgatcaaagtagctctactgtgcgccaatccaacagctgcacttaggcctatcatgtctgaagtagtgagtatgcttgaagggcggacccccgtggatgaagtggctctggatccaagaatccatggtgatgaaatgacgaggttaagagccttcgaagagcagtttgatcacagtactgcacaagggagctccccaagtgcaagtcacagcctcattcgttcatcagatgcaccatggaccggttcttctgttactactacgtcttcagatctctataaatgtagtctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

174

Amino Acids

19.21

Weight (kDa)

5.38

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	4 cut(s)	182, 195, 338, 351
AcuI	CTGAAG	2 cut(s)	312, 483
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	197, 473
AgeI	ACCGGT	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	128, 211, 311
AluBI	AGCT	4 cut(s)	181, 245, 269, 423
AluI	AGCT	4 cut(s)	181, 245, 269, 423
Alw21I	GWGCWC	1 cut(s)	425
AlwI	GGATC	4 cut(s)	182, 195, 338, 351
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	269
AsiGI	ACCGGT	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	3 cut(s)	201, 318, 471
AsuHPI	GGTGA	1 cut(s)	371
AsuII	TTCGAA	1 cut(s)	387
AvaII	GGWCC	3 cut(s)	201, 318, 471
BamHI	GGATCC	2 cut(s)	187, 343
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	148, 425
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	256
BclI	TGATCA	1 cut(s)	400
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmcAI	AGTACT	1 cut(s)	409
Bme18I	GGWCC	3 cut(s)	201, 318, 471
BmgT120I	GGNCC	3 cut(s)	201, 318, 471
BmiI	GGNNCC	5 cut(s)	6, 189, 202, 320, 345
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	387
BsaJI	CCNNGG	4 cut(s)	191, 324, 355, 467
BsaWI	WCCGGW	2 cut(s)	7, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 473
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	1 cut(s)	180
BseDI	CCNNGG	4 cut(s)	191, 324, 355, 467
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	197, 473
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	256
BsgI	GTGCAG	2 cut(s)	255, 396
BshFI	GGCC	1 cut(s)	280
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	425
BsiSI	CCGG	2 cut(s)	8, 474
BslI	CCNNNNNNNGG	2 cut(s)	197, 473
BsnI	GGCC	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	387
Bsp1286I	GDGCHC	2 cut(s)	148, 425
Bsp143I	GATC	5 cut(s)	187, 234, 343, 400, 502
Bsp19I	CCATGG	2 cut(s)	355, 467
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	280
BspLI	GGNNCC	5 cut(s)	6, 189, 202, 320, 345
BspPI	GGATC	4 cut(s)	182, 195, 338, 351
BspQI	GCTCTTC	1 cut(s)	384
BspT104I	TTCGAA	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	4 cut(s)	191, 324, 355, 467
BssMI	GATC	5 cut(s)	187, 234, 343, 400, 502
BssT1I	CCWWGG	2 cut(s)	355, 467
Bst4CI	ACNGT	4 cut(s)	56, 82, 252, 407
Bst6I	CTCTTC	1 cut(s)	384
BstBI	TTCGAA	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	3 cut(s)	324, 355, 467
BstF5I	GGATG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	5 cut(s)	190, 237, 346, 403, 505
BstMBI	GATC	5 cut(s)	187, 234, 343, 400, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	3 cut(s)	187, 343, 502
BstYI	RGATCY	3 cut(s)	187, 343, 502
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	3 cut(s)	324, 355, 467
BtsCI	GGATG	1 cut(s)	334
CfoI	GCGC	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	3 cut(s)	201, 318, 471
Csp6I	GTAC	1 cut(s)	408
CspAI	ACCGGT	1 cut(s)	473
CviAII	CATG	4 cut(s)	100, 286, 356, 468
CviJI	RGCY	9 cut(s)	146, 181, 245, 269, 280, 338, 383, 423, 444
CviKI_1	RGCY	9 cut(s)	146, 181, 245, 269, 280, 338, 383, 423, 444
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	5 cut(s)	189, 236, 345, 402, 504
DpnII	GATC	5 cut(s)	187, 234, 343, 400, 502
DraI	TTTAAA	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	355, 467
Eco147I	AGGCCT	1 cut(s)	280
Eco24I	GRGCYC	2 cut(s)	148, 425
Eco47I	GGWCC	3 cut(s)	201, 318, 471
Eco53kI	GAGCTC	1 cut(s)	423
Eco57I	CTGAAG	2 cut(s)	312, 483
EcoICRI	GAGCTC	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	355, 467
EcoT38I	GRGCYC	2 cut(s)	148, 425
ErhI	CCWWGG	2 cut(s)	355, 467
FaeI	CATG	4 cut(s)	103, 289, 359, 471
FaiI	YATR	9 cut(s)	15, 22, 101, 137, 287, 305, 357, 469, 510
FatI	CATG	4 cut(s)	99, 285, 355, 467
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	2 cut(s)	148, 425
Fsp4HI	GCNGC	1 cut(s)	270
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	2 cut(s)	8, 474
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	4 cut(s)	103, 289, 359, 471
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	2 cut(s)	63, 351
HpaII	CCGG	2 cut(s)	8, 474
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	5 cut(s)	192, 205, 292, 460, 502
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	305, 394
HpyCH4III	ACNGT	4 cut(s)	56, 82, 252, 407
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	6 cut(s)	71, 157, 272, 413, 434, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	103, 289, 359, 471
HspAI	GCGC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	5 cut(s)	187, 234, 343, 400, 502
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	3 cut(s)	178, 420, 428
LpnPI	CCDG	6 cut(s)	21, 72, 161, 167, 326, 487
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	1 cut(s)	451
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	3 cut(s)	82, 437, 484
MalI	GATC	5 cut(s)	189, 236, 345, 402, 504
MboI	GATC	5 cut(s)	187, 234, 343, 400, 502
MboII	GAAGA	3 cut(s)	401, 471, 489
MflI	RGATCY	3 cut(s)	187, 343, 502
MhlI	GDGCHC	2 cut(s)	148, 425
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	5 cut(s)	158, 186, 214, 366, 455
MseI	TTAA	3 cut(s)	39, 377, 523
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	8, 474
MwoI	GCNNNNNNNGC	1 cut(s)	313
NcoI	CCATGG	2 cut(s)	355, 467
NdeII	GATC	5 cut(s)	187, 234, 343, 400, 502
NlaIII	CATG	4 cut(s)	103, 289, 359, 471
NlaIV	GGNNCC	5 cut(s)	6, 189, 202, 320, 345
NmuCI	GTSAC	1 cut(s)	437
NspV	TTCGAA	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	351
PinAI	ACCGGT	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	425
PspN4I	GGNNCC	5 cut(s)	6, 189, 202, 320, 345
PspPI	GGNCC	3 cut(s)	201, 318, 471
PsuI	RGATCY	3 cut(s)	187, 343, 502
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	425
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	39, 377, 523
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	5 cut(s)	187, 234, 343, 400, 502
Sau96I	GGNCC	3 cut(s)	201, 318, 471
ScaI	AGTACT	1 cut(s)	409
SchI	GAGTC	1 cut(s)	72
SduI	GDGCHC	2 cut(s)	148, 425
SetI	ASST	8 cut(s)	38, 183, 197, 247, 271, 377, 425, 497
SfaNI	GCATC	1 cut(s)	451
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	3 cut(s)	201, 318, 471
SmiMI	CAYNNNNRTG	1 cut(s)	360
SseBI	AGGCCT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	316
SstI	GAGCTC	1 cut(s)	425
StuI	AGGCCT	1 cut(s)	280
StyI	CCWWGG	2 cut(s)	355, 467
TaaI	ACNGT	4 cut(s)	56, 82, 252, 407
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	2 cut(s)	109, 387
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	3 cut(s)	39, 377, 523
Tru9I	TTAA	3 cut(s)	39, 377, 523
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	4 cut(s)	116, 345, 378, 444
VpaK11BI	GGWCC	3 cut(s)	201, 318, 471
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.