Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014215.1

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

13429 .. 13725

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014215.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgatcaaagtagctctactgtgcgccaatccagcagctactcttaggcctatcatgtctgaagtagtgagtatgcttgaagggcggaccgccgtggcagaagtggttctggatccaagtatccatggtgatgaaatgacgaggttaagagcatttgaagagcagtttgatcacagtactgcacaagggagctccgcaagtggaagtcatagcctcattcgttcatcagatgcaccatggacgggttcttctattgctactacgtcttcagatctctataaagtttattctagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

98

Amino Acids

10.43

Weight (kDa)

5.15

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	85, 90, 195
AclWI	GGATC	2 cut(s)	107, 120
AcuI	CTGAAG	2 cut(s)	81, 252
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	80, 158
AluBI	AGCT	3 cut(s)	14, 38, 192
AluI	AGCT	3 cut(s)	14, 38, 192
Alw21I	GWGCWC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	107, 120
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	2 cut(s)	3, 169
BfaI	CTAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmcAI	AGTACT	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	258
BsaJI	CCNNGG	3 cut(s)	93, 124, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
BseDI	CCNNGG	3 cut(s)	93, 124, 236
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	242
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	4 cut(s)	3, 112, 169, 271
Bsp19I	CCATGG	2 cut(s)	124, 236
BspACI	CCGC	3 cut(s)	85, 90, 195
BspANI	GGCC	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	107, 120
BspQI	GCTCTTC	1 cut(s)	153
BssECI	CCNNGG	3 cut(s)	93, 124, 236
BssMI	GATC	4 cut(s)	3, 112, 169, 271
BssT1I	CCWWGG	2 cut(s)	124, 236
Bst4CI	ACNGT	2 cut(s)	21, 176
Bst6I	CTCTTC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	44
BstDSI	CCRYGG	3 cut(s)	93, 124, 236
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	4 cut(s)	6, 115, 172, 274
BstMBI	GATC	4 cut(s)	3, 112, 169, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 82
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	112, 271
BstYI	RGATCY	2 cut(s)	112, 271
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	49
BtgI	CCRYGG	3 cut(s)	93, 124, 236
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	87
CpoI	CGGWCCG	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	177
CspI	CGGWCCG	1 cut(s)	87
CviAII	CATG	3 cut(s)	55, 125, 237
CviJI	RGCY	5 cut(s)	14, 38, 49, 192, 213
CviKI_1	RGCY	5 cut(s)	14, 38, 49, 192, 213
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	4 cut(s)	5, 114, 171, 273
DpnII	GATC	4 cut(s)	3, 112, 169, 271
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	124, 236
Eco147I	AGGCCT	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	192
Eco57I	CTGAAG	2 cut(s)	81, 252
EcoICRI	GAGCTC	1 cut(s)	192
EcoT14I	CCWWGG	2 cut(s)	124, 236
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	2 cut(s)	124, 236
FaeI	CATG	3 cut(s)	58, 128, 240
FaiI	YATR	6 cut(s)	56, 74, 126, 210, 238, 279
FatI	CATG	3 cut(s)	54, 124, 236
FbaI	TGATCA	2 cut(s)	3, 169
Fnu4HI	GCNGC	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	58, 128, 240
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	3 cut(s)	61, 229, 271
Hpy188III	TCNNGA	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	2 cut(s)	21, 176
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	182, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 82
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	3 cut(s)	58, 128, 240
HspAI	GCGC	1 cut(s)	24
Ksp22I	TGATCA	2 cut(s)	3, 169
Kzo9I	GATC	4 cut(s)	3, 112, 169, 271
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	189, 197
LpnPI	CCDG	2 cut(s)	45, 95
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	263
MalI	GATC	4 cut(s)	5, 114, 171, 273
MboI	GATC	4 cut(s)	3, 112, 169, 271
MboII	GAAGA	3 cut(s)	170, 240, 258
MflI	RGATCY	2 cut(s)	112, 271
MhlI	GDGCHC	1 cut(s)	194
MnlI	CCTC	2 cut(s)	135, 224
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	2 cut(s)	146, 295
MslI	CAYNNNNRTG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	32, 82
NcoI	CCATGG	2 cut(s)	124, 236
NdeII	GATC	4 cut(s)	3, 112, 169, 271
NlaIII	CATG	3 cut(s)	58, 128, 240
NlaIV	GGNNCC	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	112, 271
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	129
Rsr2I	CGGWCCG	1 cut(s)	87
RsrII	CGGWCCG	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	146, 295
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	4 cut(s)	3, 112, 169, 271
Sau96I	GGNCC	1 cut(s)	87
ScaI	AGTACT	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	5 cut(s)	16, 40, 146, 194, 266
SfaNI	GCATC	1 cut(s)	220
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	129
SseBI	AGGCCT	1 cut(s)	49
SsiI	CCGC	3 cut(s)	85, 90, 195
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	194
StuI	AGGCCT	1 cut(s)	49
StyI	CCWWGG	2 cut(s)	124, 236
TaaI	ACNGT	2 cut(s)	21, 176
TaiI	ACGT	1 cut(s)	266
TatI	WGTACW	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	146, 295
Tru9I	TTAA	2 cut(s)	146, 295
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	147, 213
VpaK11BI	GGWCC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	291
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.