Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

86218601 .. 86228434

Gene Structure 9834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2610 bp

ATGGGCTTCTACCAAGTTGGAATTTCTAGCAGGGTTCTCAGTGTGAACAACTTATCAGGACCTATCCCTGGCTATTTGGGAAACATAACTACTCTCAGAGCTCTGGCCTTGGAAAGCAACTTATTTTCTGGACCTGTTCCTTCGGACCTGGGAAGATTGATTAACATGGAGATTCTCTATCTTCGCGCTAACAACCTCACTGGAGAGTTGCCTGTGGCTCTCACTAATCTGACCAAATTGAAAGTACTTCAGATAGGTAGTAACAACTTCACTGGAAGAATACCTAACTACTTTCAAAGTTGGAAAGACCTCCAAAGCTTAGAGATGCAAGCGAGCGGTCTTGAAGGGCCCCTTCCATCTAGTCTCTCTGCCTTAAACAATATGACAGACCTGAGGATTGGTGACTTAAGTGGTGAGAGTTCAGAATTTCCAAATTTATCAAACATCAAAAACATGAAGACACTGATGTTAAGGAGCTGCAATATAAAAGGAGAAATCCCTGAATATATATCTACCATGACAAAGCTGACTGCTTTAGATCTAAGCTTCAACAGATTGGAAGGGGCCATTCCAAATTTTGGTATTATAATGCAACTGTCAACAATATATTTGACAGGTAACTTGCTTACGGGGCTTCCAGACTGGATCAAAAGTAGAGACAGTCGCTACAATATAGATATCTCCTACAATAACTTCTCTCAGAGCTCTGTCCCAACTACTTGTCGAGGGACTTTCAACTGGTTCAGAAGTATTTCCCAACAGAACAACTCAATACTAAGCAATTGCCTCAACTCATGTTCAAAAGATCAGTACTCATTGCATATAAATTGTGGTGGAAAACAAACCACCATCGGAAGCATCAAGTATGAAGGAGATGAAGCCTCAGGAGGTGCAGCAACATTTGTTCAGTCCACAACCCCCAATTGGGGGTTTAGTAGCACCGGTGATTTCGTAGATGCTTGGAGTTCTGACAACGACTATATTGCCAATAATGTTTCCATACTCAAAATGAACAACTCCGAATTGTACACAACTGCACGACTTTCTCCTCTTTCTCTCACCTACTATGCCCATTGCTTAGCAAATGGAAATTACACTGTGAAACTACACTTCGCAGAGATAGTTCTCAGAGACAACAGGTCTTATTACGGTGTTGGAAGACGAATGTTTGATGTTTATATCCAGGACAAATTGGTACTGAAGGATTTTGACATTAGAAAGGAAGCACTAGGGGTTGATAAGGAAGTGATCAAGGTATTTAAAGCAGTTGTTAATGTTAAGACTCTACTAATCCGCTTTCAGTGGGCTGGGAGAGGGACAACTAATGTTCCTCAAAGAGGAAAATATGGTTCTCTTATATCAGCCATCTCAGTGCAGTCTGATTTCAAGCCACCTGATGATAGCAAAACGAAGATTTACATTGTGATTGGAGTTGTTTCAGCTTTATGCCTTATCTTCTTGATATTTGGCATTCTTTGGTTAAGAGGCTGTTTCGGACATAAGACAACCAGAGAAGAAGAACTGAGAGGATTGGATCTGCAAACTGGTTTCTTTAGATTCAAACAAATTAAAGCTGCCACTAACAACTTTGATGCTGCAAACAAGCTCGGGGAAGGTGGCTTTGGAGCTGTTTACAAGGGCGAATTATTGGATGGTAGTTTTATTGCCGTTAAGCAACTTTCTTCAAAATCAAAGCAGGGAAATCGTGAATTTGTGAATGAAATAGGCATGATGTCTGCATTACAACACCCAAATCTTGTTAAACTGTATGGATGTTGCACGGAAGGAAATCAGTTATTGTTGGTCTATGAGTACATGGAGAACAATAGCCTTTCACATACTTTATTTGGTTCAGAGGAAGGCCTACGGAAATTGGACTGGCCTACAAGGCAGAAAATATGTGTTGGAATTGCAAGGGGTCTTGCTTTCCTGCACGATGGAACCTTGAAAATCGTTCATAGAGATATCAAAACAACCAACATATTGCTGGATAGGGACCTTAATGCTAAGATAGCTGACTTCGGTTTGGCTAAGCTTGACGAGGAGGAGCATACCCATATTAGCACCAGAGTTGCTGGAACTATAGGATACATGGCACCAGAATATGCTTTATGGGGCTATCTAACCGATAAGGCAGATGTTTACAGTTTTGGGGTTGTTGCTTTAGAGCTTGTATCAGGGAAAAACAACATCAAATATCGGCCAAACGAAAATTTTGTATGCCTTCTAGATTGGGCCCTTGTTTTGCAACAAAAAGGAAACCTAATGGAGCTGGTGGATCCAAAGTTGAATGCTGGGTTCAACAAGGAAGAGGCACTTAGAATGATAAAGGTAGCTCTACTATGTGCCAATTCATCACCGGCACTAAGACCCACAATGTCTGAAGTAGTGAGCATGCTTGAAGGCCGAACTGTTGTTCATGAAGTGACCATAAATCCAAGTATTTATGATGATGAAATGAGGTTTAAGGCCTTTACAGAGGACTCTGATCCGAATATGCAAGAGAGCTTTGAGGAGACTCGAAGCTTCATTCACTCCGATTCAAAATGGACAGCCTCTTCCTCATCGTCAGTCCTGAATATTGATACAGTTAAACTTGGGACTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

869

Amino Acids

96.61

Weight (kDa)

7.15

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	25 - 217	1.3e-10	Leucine-rich repeat region
Malectin	PF11721	272 - 456	3.3e-38	Malectin domain
Pkinase	PF00069	532 - 798	1.4e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	533 - 800	1.2e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	2095
AccB7I	CCANNNNNTGG	1 cut(s)	578
AccBSI	CCGCTC	1 cut(s)	336
AccII	CGCG	1 cut(s)	186
AciI	CCGC	2 cut(s)	336, 1294
AclWI	GGATC	5 cut(s)	653, 1542, 2273, 2286, 2483
AcoI	YGGCCR	1 cut(s)	2201
AcsI	RAATTY	6 cut(s)	21, 425, 433, 574, 1709, 2212
AcuI	CTGAAG	3 cut(s)	233, 1220, 2403
AfaI	GTAC	5 cut(s)	246, 812, 1028, 1197, 1814
AfiI	CCNNNNNNNGG	7 cut(s)	68, 578, 924, 925, 926, 927, 1337
AflII	CTTAAG	1 cut(s)	406
AgeI	ACCGGT	1 cut(s)	941
AhdI	GACNNNNNGTC	1 cut(s)	1138
AjnI	CCWGG	3 cut(s)	67, 147, 1182
AjuI	GAANNNNNNNTTGG	2 cut(s)	1605, 1637
Alw21I	GWGCWC	2 cut(s)	103, 707
Alw26I	GTCTC	4 cut(s)	368, 651, 1125, 2510
AlwI	GGATC	5 cut(s)	653, 1542, 2273, 2286, 2483
Ama87I	CYCGRG	1 cut(s)	1607
AoxI	GGCC	9 cut(s)	105, 347, 564, 1861, 1880, 2201, 2235, 2404, 2469
ApaI	GGGCCC	2 cut(s)	351, 2239
ApeKI	GCWGC	4 cut(s)	477, 893, 1574, 1595
ApoI	RAATTY	6 cut(s)	21, 425, 433, 574, 1709, 2212
AsiGI	ACCGGT	1 cut(s)	941
Asp700I	GAANNNNTTC	1 cut(s)	751
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	9 cut(s)	59, 131, 145, 347, 348, 564, 1996, 2235, 2236
AsuHPI	GGTGA	5 cut(s)	413, 425, 956, 1051, 2349
AvaI	CYCGRG	1 cut(s)	1607
AvaII	GGWCC	4 cut(s)	59, 131, 145, 1996
AxyI	CCTNAGG	2 cut(s)	392, 883
BaeGI	GKGCMC	2 cut(s)	351, 2239
BamHI	GGATCC	1 cut(s)	2278
BanI	GGYRCC	1 cut(s)	2095
BanII	GRGCYC	4 cut(s)	103, 351, 707, 2239
BbsI	GAAGAC	2 cut(s)	464, 1165
Bbv12I	GWGCWC	2 cut(s)	103, 707
BbvI	GCAGC	4 cut(s)	464, 905, 1561, 1582
BccI	CCATC	5 cut(s)	364, 857, 1373, 1646, 1931
BceAI	ACGGC	1 cut(s)	1652
BcgI	CGANNNNNNTGC	4 cut(s)	965, 999, 1685, 1719
BciT130I	CCWGG	3 cut(s)	69, 149, 1184
BciVI	GTATCC	1 cut(s)	2081
BclI	TGATCA	1 cut(s)	1248
BcoDI	GTCTC	4 cut(s)	368, 651, 1125, 2510
BfaI	CTAG	4 cut(s)	27, 360, 1229, 2228
BfmI	CTRYAG	1 cut(s)	2082
BfrI	CTTAAG	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	2081
BglI	GCCNNNNNGGC	1 cut(s)	1888
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	4 cut(s)	478, 894, 1575, 1596
BlpI	GCTNAGC	2 cut(s)	1078, 2031
BlsI	GCNGC	4 cut(s)	479, 895, 1576, 1597
BmcAI	AGTACT	2 cut(s)	246, 812
Bme1390I	CCNGG	3 cut(s)	69, 149, 1184
Bme18I	GGWCC	4 cut(s)	59, 131, 145, 1996
BmeRI	GACNNNNNGTC	1 cut(s)	1138
BmeT110I	CYCGRG	1 cut(s)	1607
BmgT120I	GGNCC	9 cut(s)	59, 131, 145, 347, 348, 564, 1996, 2235, 2236
BmiI	GGNNCC	8 cut(s)	349, 350, 565, 1942, 1997, 2097, 2237, 2280
BmrFI	CCNGG	3 cut(s)	69, 149, 1184
BmsI	GCATC	4 cut(s)	315, 867, 946, 1582
BpiI	GAAGAC	2 cut(s)	464, 1165
BpmI	CTGGAG	1 cut(s)	222
Bpu1102I	GCTNAGC	2 cut(s)	1078, 2031
BsaJI	CCNNGG	3 cut(s)	67, 108, 148
BsaWI	WCCGGW	1 cut(s)	941
Bsc4I	CCNNNNNNNGG	7 cut(s)	68, 578, 924, 925, 926, 927, 1337
Bse118I	RCCGGY	2 cut(s)	941, 2359
Bse1I	ACTGG	6 cut(s)	205, 277, 647, 743, 1549, 1883
Bse21I	CCTNAGG	2 cut(s)	392, 883
Bse3DI	GCAATG	2 cut(s)	815, 1072
BseBI	CCWGG	3 cut(s)	69, 149, 1184
BseDI	CCNNGG	3 cut(s)	67, 108, 148
BseGI	GGATG	2 cut(s)	1657, 1778
BseLI	CCNNNNNNNGG	7 cut(s)	68, 578, 924, 925, 926, 927, 1337
BseMI	GCAATG	2 cut(s)	815, 1072
BseMII	CTCAG	8 cut(s)	52, 109, 383, 713, 897, 1141, 1383, 1514
BseNI	ACTGG	6 cut(s)	205, 277, 647, 743, 1549, 1883
BseRI	GAGGAG	4 cut(s)	1038, 2057, 2060, 2528
BseSI	GKGCMC	2 cut(s)	351, 2239
BseXI	GCAGC	4 cut(s)	464, 905, 1561, 1582
BseYI	CCCAGC	2 cut(s)	1307, 2294
BsgI	GTGCAG	4 cut(s)	912, 1020, 1394, 1916
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	9 cut(s)	107, 349, 566, 1863, 1882, 2203, 2237, 2406, 2471
BshNI	GGYRCC	1 cut(s)	2095
BshTI	ACCGGT	1 cut(s)	941
BsiHKAI	GWGCWC	2 cut(s)	103, 707
BsiHKCI	CYCGRG	1 cut(s)	1607
BsiSI	CCGG	2 cut(s)	942, 2360
BslFI	GGGAC	4 cut(s)	695, 742, 1330, 2009
BslI	CCNNNNNNNGG	7 cut(s)	68, 578, 924, 925, 926, 927, 1337
BsmAI	GTCTC	4 cut(s)	368, 651, 1125, 2510
BsmFI	GGGAC	4 cut(s)	695, 742, 1330, 2009
BsmI	GAATGC	2 cut(s)	1470, 2296
BsnI	GGCC	9 cut(s)	107, 349, 566, 1863, 1882, 2203, 2237, 2406, 2471
BsoBI	CYCGRG	1 cut(s)	1607
Bsp120I	GGGCCC	2 cut(s)	347, 2235
Bsp1286I	GDGCHC	4 cut(s)	103, 351, 707, 2239
Bsp1407I	TGTACA	1 cut(s)	1026
Bsp143I	GATC	7 cut(s)	538, 645, 805, 1248, 1534, 2278, 2488
Bsp1720I	GCTNAGC	2 cut(s)	1078, 2031
BspACI	CCGC	2 cut(s)	336, 1294
BspANI	GGCC	9 cut(s)	107, 349, 566, 1863, 1882, 2203, 2237, 2406, 2471
BspCNI	CTCAG	8 cut(s)	51, 108, 384, 712, 896, 1140, 1382, 1515
BspFNI	CGCG	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	2419
BspLI	GGNNCC	8 cut(s)	349, 350, 565, 1942, 1997, 2097, 2237, 2280
BspPI	GGATC	5 cut(s)	653, 1542, 2273, 2286, 2483
BspT107I	GGYRCC	1 cut(s)	2095
BspTI	CTTAAG	1 cut(s)	406
BsrBI	CCGCTC	1 cut(s)	336
BsrDI	GCAATG	2 cut(s)	815, 1072
BsrFI	RCCGGY	2 cut(s)	941, 2359
BsrGI	TGTACA	1 cut(s)	1026
BsrI	ACTGG	6 cut(s)	205, 277, 647, 743, 1549, 1883
BssAI	RCCGGY	2 cut(s)	941, 2359
BssECI	CCNNGG	3 cut(s)	67, 108, 148
BssMI	GATC	7 cut(s)	538, 645, 805, 1248, 1534, 2278, 2488
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	3 cut(s)	69, 149, 1184
Bst4CI	ACNGT	8 cut(s)	597, 662, 1099, 1151, 1767, 2147, 2413, 2590
Bst6I	CTCTTC	2 cut(s)	2304, 2563
BstAFI	CTTAAG	1 cut(s)	406
BstAUI	TGTACA	1 cut(s)	1026
BstC8I	GCNNGC	3 cut(s)	330, 334, 2396
BstENI	CCTNNNNNAGG	1 cut(s)	1335
BstF5I	GGATG	2 cut(s)	1657, 1778
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	7 cut(s)	541, 648, 808, 1251, 1537, 2281, 2491
BstMAI	GTCTC	4 cut(s)	368, 651, 1125, 2510
BstMBI	GATC	7 cut(s)	538, 645, 805, 1248, 1534, 2278, 2488
BstMWI	GCNNNNNNNGC	3 cut(s)	631, 1888, 2012
BstNI	CCWGG	3 cut(s)	69, 149, 1184
BstNSI	RCATGY	1 cut(s)	2398
BstSCI	CCNGG	3 cut(s)	67, 147, 1182
BstSFI	CTRYAG	1 cut(s)	2082
BstSLI	GKGCMC	2 cut(s)	351, 2239
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	4 cut(s)	464, 905, 1561, 1582
BstV2I	GAAGAC	2 cut(s)	464, 1165
BstX2I	RGATCY	3 cut(s)	538, 1534, 2278
BstYI	RGATCY	3 cut(s)	538, 1534, 2278
Bsu36I	CCTNAGG	2 cut(s)	392, 883
BsuI	GTATCC	1 cut(s)	2081
BsuRI	GGCC	9 cut(s)	107, 349, 566, 1863, 1882, 2203, 2237, 2406, 2471
BtsCI	GGATG	2 cut(s)	1657, 1778
BtsIMutI	CAGTG	7 cut(s)	46, 198, 270, 461, 1095, 1307, 1377
Cac8I	GCNNGC	3 cut(s)	330, 334, 2396
CciI	TCATGA	1 cut(s)	2419
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	2 cut(s)	941, 2359
Cfr13I	GGNCC	9 cut(s)	59, 131, 145, 347, 348, 564, 1996, 2235, 2236
Csp6I	GTAC	5 cut(s)	245, 811, 1027, 1196, 1813
CspAI	ACCGGT	1 cut(s)	941
CviAII	CATG	9 cut(s)	166, 454, 517, 795, 1729, 1816, 2092, 2395, 2420
CviQI	GTAC	5 cut(s)	245, 811, 1027, 1196, 1813
DpnI	GATC	7 cut(s)	540, 647, 807, 1250, 1536, 2280, 2490
DpnII	GATC	7 cut(s)	538, 645, 805, 1248, 1534, 2278, 2488
DraI	TTTAAA	1 cut(s)	1261
DriI	GACNNNNNGTC	1 cut(s)	1138
EaeI	YGGCCR	1 cut(s)	2201
Eam1104I	CTCTTC	2 cut(s)	2304, 2563
Eam1105I	GACNNNNNGTC	1 cut(s)	1138
EarI	CTCTTC	2 cut(s)	2304, 2563
Ecl136II	GAGCTC	2 cut(s)	101, 705
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	2 cut(s)	1863, 2471
Eco24I	GRGCYC	4 cut(s)	103, 351, 707, 2239
Eco32I	GATATC	2 cut(s)	679, 1966
Eco47I	GGWCC	4 cut(s)	59, 131, 145, 1996
Eco53kI	GAGCTC	2 cut(s)	101, 705
Eco57I	CTGAAG	3 cut(s)	233, 1220, 2403
Eco81I	CCTNAGG	2 cut(s)	392, 883
Eco88I	CYCGRG	1 cut(s)	1607
EcoICRI	GAGCTC	2 cut(s)	101, 705
EcoNI	CCTNNNNNAGG	1 cut(s)	1335
EcoO109I	RGGNCCY	5 cut(s)	59, 347, 348, 1996, 2236
EcoRII	CCWGG	3 cut(s)	67, 147, 1182
EcoRV	GATATC	2 cut(s)	679, 1966
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	4 cut(s)	103, 351, 707, 2239
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	9 cut(s)	169, 457, 520, 798, 1732, 1819, 2095, 2398, 2423
FalI	AAGNNNNNCTT	4 cut(s)	336, 368, 2301, 2333
FaqI	GGGAC	4 cut(s)	695, 742, 1330, 2009
FatI	CATG	9 cut(s)	165, 453, 516, 794, 1728, 1815, 2091, 2394, 2419
FbaI	TGATCA	1 cut(s)	1248
Fnu4HI	GCNGC	4 cut(s)	478, 894, 1575, 1596
FokI	GGATG	2 cut(s)	1664, 1785
FriOI	GRGCYC	4 cut(s)	103, 351, 707, 2239
Fsp4HI	GCNGC	4 cut(s)	478, 894, 1575, 1596
FspBI	CTAG	4 cut(s)	27, 360, 1229, 2228
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	4 cut(s)	478, 894, 1575, 1596
GsaI	CCCAGC	2 cut(s)	1311, 2298
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	9 cut(s)	107, 349, 566, 1863, 1882, 2203, 2237, 2406, 2471
HapII	CCGG	2 cut(s)	942, 2360
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	9 cut(s)	169, 457, 520, 798, 1732, 1819, 2095, 2398, 2423
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HindIII	AAGCTT	4 cut(s)	316, 544, 2033, 2524
HinfI	GANTC	7 cut(s)	172, 1282, 1557, 2483, 2518, 2540, 2602
HpaII	CCGG	2 cut(s)	942, 2360
HphI	GGTGA	5 cut(s)	413, 425, 956, 1051, 2349
Hpy166II	GTNNAC	6 cut(s)	46, 600, 912, 1029, 1633, 2143
Hpy8I	GTNNAC	6 cut(s)	46, 600, 912, 1029, 1633, 2143
HpyCH4III	ACNGT	8 cut(s)	597, 662, 1099, 1151, 1767, 2147, 2413, 2590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	631, 1888, 2012
Hsp92II	CATG	9 cut(s)	169, 457, 520, 798, 1732, 1819, 2095, 2398, 2423
HspAI	GCGC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	1248
Kzo9I	GATC	7 cut(s)	538, 645, 805, 1248, 1534, 2278, 2488
LmnI	GCTCC	4 cut(s)	474, 1625, 2047, 2269
Lsp1109I	GCAGC	4 cut(s)	464, 905, 1561, 1582
LweI	GCATC	4 cut(s)	315, 867, 946, 1582
MaeI	CTAG	4 cut(s)	27, 360, 1229, 2228
MaeIII	GTNAC	4 cut(s)	260, 401, 617, 2425
MalI	GATC	7 cut(s)	540, 647, 807, 1250, 1536, 2280, 2490
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	7 cut(s)	538, 645, 805, 1248, 1534, 2278, 2488
MfeI	CAATTG	2 cut(s)	781, 922
MflI	RGATCY	3 cut(s)	538, 1534, 2278
MhlI	GDGCHC	4 cut(s)	103, 351, 707, 2239
MlyI	GAGTC	4 cut(s)	1276, 2477, 2512, 2596
MmeI	TCCRAC	3 cut(s)	281, 1135, 1885
MroXI	GAANNNNTTC	1 cut(s)	751
MslI	CAYNNNNRTG	1 cut(s)	1370
MspCI	CTTAAG	1 cut(s)	406
MspI	CCGG	2 cut(s)	942, 2360
MspR9I	CCNGG	3 cut(s)	69, 149, 1184
MunI	CAATTG	2 cut(s)	781, 922
Mva1269I	GAATGC	2 cut(s)	1470, 2296
MvaI	CCWGG	3 cut(s)	69, 149, 1184
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	631, 1888, 2012
NdeII	GATC	7 cut(s)	538, 645, 805, 1248, 1534, 2278, 2488
NlaIII	CATG	9 cut(s)	169, 457, 520, 798, 1732, 1819, 2095, 2398, 2423
NlaIV	GGNNCC	8 cut(s)	349, 350, 565, 1942, 1997, 2097, 2237, 2280
NmuCI	GTSAC	2 cut(s)	401, 2425
NspI	RCATGY	1 cut(s)	2398
PaeI	GCATGC	1 cut(s)	2398
PagI	TCATGA	1 cut(s)	2419
PceI	AGGCCT	2 cut(s)	1863, 2471
PctI	GAATGC	2 cut(s)	1470, 2296
PdmI	GAANNNNTTC	1 cut(s)	751
PfeI	GAWTC	3 cut(s)	172, 1557, 2540
PflMI	CCANNNNNTGG	1 cut(s)	578
PfoI	TCCNGGA	1 cut(s)	1182
PinAI	ACCGGT	1 cut(s)	941
PkrI	GCNGC	4 cut(s)	479, 895, 1576, 1597
PleI	GAGTC	4 cut(s)	1276, 2477, 2512, 2596
PpsI	GAGTC	4 cut(s)	1276, 2477, 2512, 2596
PpuMI	RGGWCCY	2 cut(s)	59, 1996
PsiI	TTATAA	1 cut(s)	587
Psp124BI	GAGCTC	2 cut(s)	103, 707
Psp5II	RGGWCCY	2 cut(s)	59, 1996
Psp6I	CCWGG	3 cut(s)	67, 147, 1182
PspFI	CCCAGC	2 cut(s)	1307, 2294
PspGI	CCWGG	3 cut(s)	67, 147, 1182
PspN4I	GGNNCC	8 cut(s)	349, 350, 565, 1942, 1997, 2097, 2237, 2280
PspOMI	GGGCCC	2 cut(s)	347, 2235
PspPI	GGNCC	9 cut(s)	59, 131, 145, 347, 348, 564, 1996, 2235, 2236
PspPPI	RGGWCCY	2 cut(s)	59, 1996
PsuI	RGATCY	3 cut(s)	538, 1534, 2278
RsaI	GTAC	5 cut(s)	246, 812, 1028, 1197, 1814
RsaNI	GTAC	5 cut(s)	245, 811, 1027, 1196, 1813
RseI	CAYNNNNRTG	1 cut(s)	1370
SacI	GAGCTC	2 cut(s)	103, 707
SatI	GCNGC	4 cut(s)	478, 894, 1575, 1596
Sau3AI	GATC	7 cut(s)	538, 645, 805, 1248, 1534, 2278, 2488
Sau96I	GGNCC	9 cut(s)	59, 131, 145, 347, 348, 564, 1996, 2235, 2236
ScaI	AGTACT	2 cut(s)	246, 812
SchI	GAGTC	4 cut(s)	1276, 2477, 2512, 2596
ScrFI	CCNGG	3 cut(s)	69, 149, 1184
SduI	GDGCHC	4 cut(s)	103, 351, 707, 2239
SfaNI	GCATC	4 cut(s)	315, 867, 946, 1582
SfcI	CTRYAG	1 cut(s)	2082
SgrAI	CRCCGGYG	1 cut(s)	941
SinI	GGWCC	4 cut(s)	59, 131, 145, 1996
SmiMI	CAYNNNNRTG	1 cut(s)	1370
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
SphI	GCATGC	1 cut(s)	2398
SseBI	AGGCCT	2 cut(s)	1863, 2471
SsiI	CCGC	2 cut(s)	336, 1294
SspI	AATATT	1 cut(s)	2581
SspMI	CTAG	4 cut(s)	27, 360, 1229, 2228
SstI	GAGCTC	2 cut(s)	103, 707
StuI	AGGCCT	2 cut(s)	1863, 2471
StyD4I	CCNGG	3 cut(s)	67, 147, 1182
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	8 cut(s)	597, 662, 1099, 1151, 1767, 2147, 2413, 2590
TaqI	TCGA	3 cut(s)	724, 2521, 2605
TatI	WGTACW	4 cut(s)	244, 810, 1026, 1812
TfiI	GAWTC	3 cut(s)	172, 1557, 2540
TscAI	CASTG	7 cut(s)	46, 205, 277, 468, 1102, 1307, 1377
TseFI	GTSAC	2 cut(s)	401, 2425
TseI	GCWGC	4 cut(s)	477, 893, 1574, 1595
Tsp45I	GTSAC	2 cut(s)	401, 2425
TspGWI	ACGGA	2 cut(s)	1796, 1882
TspRI	CASTG	7 cut(s)	46, 205, 277, 468, 1102, 1307, 1377
Van91I	CCANNNNNTGG	1 cut(s)	578
Vha464I	CTTAAG	1 cut(s)	406
VpaK11BI	GGWCC	4 cut(s)	59, 131, 145, 1996
XagI	CCTNNNNNAGG	1 cut(s)	1335
XapI	RAATTY	6 cut(s)	21, 425, 433, 574, 1709, 2212
XbaI	TCTAGA	1 cut(s)	2227
XceI	RCATGY	1 cut(s)	2398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1984
XmnI	GAANNNNTTC	1 cut(s)	751
XspI	CTAG	4 cut(s)	27, 360, 1229, 2228
ZrmI	AGTACT	2 cut(s)	246, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.