Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

9266878 .. 9289169

Gene Structure 22292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG100500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATTGGGCCCTTATTTTGCAACAAAGAGGGAACTTACTGGAGCTGGTGGATCCAAGGTTGGGGTCCAATTTCAGTAAGAAAGAGGCGATTAGAACGATTAAAGTAGCTCTACTGTGCGCCAATCCAACAGCTGCACTTAGGCCTATCATGTCTGCAGTAGTGAGCATGCTTGAAGGGCGGACCCCCGTGGATGAAGTGGTTCTGGATCCAAGTATCCATGATGATGAAATGACGAGGTTAAGAGCCTTCGAAGAGCAGTTTGATCACAGTACTGCACAAGGGAGCTCCCCAAGTGGAAGTCACAGCCTCATTCGTTCATCAGATGCACCATTGACGGAACAATGCACAAAAGAGATGTTTGACTATAAGCTTCGTCTCTCAAATTCTCTTATTCTACAACAAAGTACAAATATACATATCCACGAACTTATCCTCTCAGTGACGACATCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

152

Amino Acids

16.9

Weight (kDa)

5.31

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	4 cut(s)	47, 60, 203, 216
AcsI	RAATTY	1 cut(s)	385
AfaI	GTAC	2 cut(s)	274, 409
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	5 cut(s)	46, 110, 134, 288, 373
AluI	AGCT	5 cut(s)	46, 110, 134, 288, 373
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	4 cut(s)	47, 60, 203, 216
AoxI	GGCC	2 cut(s)	9, 143
ApaI	GGGCCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	4 cut(s)	9, 10, 66, 183
AsuII	TTCGAA	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	66, 183
BaeGI	GKGCMC	1 cut(s)	13
BamHI	GGATCC	2 cut(s)	52, 208
BanII	GRGCYC	2 cut(s)	13, 290
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	227
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmcAI	AGTACT	1 cut(s)	274
Bme18I	GGWCC	2 cut(s)	66, 183
BmgT120I	GGNCC	4 cut(s)	9, 10, 66, 183
BmiI	GGNNCC	5 cut(s)	11, 54, 67, 185, 210
BmsI	GCATC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	56, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	56, 189
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	2 cut(s)	120, 261
BshFI	GGCC	2 cut(s)	11, 145
BsiHKAI	GWGCWC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	11, 145
Bsp119I	TTCGAA	1 cut(s)	252
Bsp120I	GGGCCC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	13, 290
Bsp143I	GATC	3 cut(s)	52, 208, 265
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	2 cut(s)	11, 145
BspCNI	CTCAG	1 cut(s)	452
BspLI	GGNNCC	5 cut(s)	11, 54, 67, 185, 210
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	4 cut(s)	47, 60, 203, 216
BspQI	GCTCTTC	1 cut(s)	249
BspT104I	TTCGAA	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	56, 189
BssMI	GATC	3 cut(s)	52, 208, 265
BssT1I	CCWWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	117, 272
Bst6I	CTCTTC	1 cut(s)	249
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	140, 439
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	3 cut(s)	55, 211, 268
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	52, 208, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	52, 208
BstYI	RGATCY	2 cut(s)	52, 208
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	11, 145
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	1 cut(s)	170
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	4 cut(s)	9, 10, 66, 183
Csp6I	GTAC	2 cut(s)	273, 408
CviAII	CATG	3 cut(s)	151, 169, 221
CviJI	RGCY	9 cut(s)	11, 46, 110, 134, 145, 248, 288, 309, 373
CviKI_1	RGCY	9 cut(s)	11, 46, 110, 134, 145, 248, 288, 309, 373
CviQI	GTAC	2 cut(s)	273, 408
DdeI	CTNAG	2 cut(s)	140, 439
DpnI	GATC	3 cut(s)	54, 210, 267
DpnII	GATC	3 cut(s)	52, 208, 265
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	56
Eco147I	AGGCCT	1 cut(s)	145
Eco24I	GRGCYC	2 cut(s)	13, 290
Eco47I	GGWCC	2 cut(s)	66, 183
Eco53kI	GAGCTC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	56
EcoT38I	GRGCYC	2 cut(s)	13, 290
ErhI	CCWWGG	1 cut(s)	56
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	3 cut(s)	154, 172, 224
FaiI	YATR	6 cut(s)	152, 170, 222, 369, 416, 420
FatI	CATG	3 cut(s)	150, 168, 220
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	2 cut(s)	13, 290
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	11, 145
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	154, 172, 224
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	325, 454
Hpy188III	TCNNGA	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	170, 259
HpyCH4III	ACNGT	2 cut(s)	117, 272
HpyCH4V	TGCA	6 cut(s)	22, 137, 158, 278, 329, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	2 cut(s)	140, 439
Hsp92II	CATG	3 cut(s)	154, 172, 224
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	52, 208, 265
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	3 cut(s)	43, 285, 293
LpnPI	CCDG	3 cut(s)	26, 32, 191
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	316
MaeIII	GTNAC	2 cut(s)	302, 442
MalI	GATC	3 cut(s)	54, 210, 267
MboI	GATC	3 cut(s)	52, 208, 265
MboII	GAAGA	1 cut(s)	266
MflI	RGATCY	2 cut(s)	52, 208
MhlI	GDGCHC	2 cut(s)	13, 290
MluCI	AATT	2 cut(s)	70, 385
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	23, 79, 231, 320, 446
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	3 cut(s)	102, 242, 457
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	3 cut(s)	52, 208, 265
NlaIII	CATG	3 cut(s)	154, 172, 224
NlaIV	GGNNCC	5 cut(s)	11, 54, 67, 185, 210
NmuCI	GTSAC	2 cut(s)	302, 442
NspI	RCATGY	1 cut(s)	172
NspV	TTCGAA	1 cut(s)	252
PaeI	GCATGC	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	290
PspN4I	GGNNCC	5 cut(s)	11, 54, 67, 185, 210
PspOMI	GGGCCC	1 cut(s)	9
PspPI	GGNCC	4 cut(s)	9, 10, 66, 183
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	52, 208
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	274, 409
RsaNI	GTAC	2 cut(s)	273, 408
RseI	CAYNNNNRTG	1 cut(s)	225
SacI	GAGCTC	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	102, 242, 457
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	52, 208, 265
Sau96I	GGNCC	4 cut(s)	9, 10, 66, 183
ScaI	AGTACT	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	13, 290
SetI	ASST	7 cut(s)	48, 62, 112, 136, 242, 290, 375
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	252
SinI	GGWCC	2 cut(s)	66, 183
SmiMI	CAYNNNNRTG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	2 cut(s)	70, 385
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	181
SstI	GAGCTC	1 cut(s)	290
StuI	AGGCCT	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	117, 272
TaqI	TCGA	1 cut(s)	252
TasI	AATT	2 cut(s)	70, 385
TatI	WGTACW	2 cut(s)	272, 407
Tru1I	TTAA	3 cut(s)	102, 242, 457
Tru9I	TTAA	3 cut(s)	102, 242, 457
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	2 cut(s)	302, 442
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	2 cut(s)	302, 442
TspDTI	ATGAA	3 cut(s)	210, 243, 309
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	66, 183
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.