Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

18167829 .. 18174273

Gene Structure 6445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2493 bp

ATGGTAAGAATTTATAGGAACAATCCAGTGGAGACGGTCATCTTCTTCATAGTGGTCATTTCCATGGCTCAAGTCACATTTGAAGCACAGACCATGACTCTTCCAGCTGATGAGGTGCAAGCCCTTCATGAAGTTGCTGAGCAACTGAACAAAAAGGATTGGAATTTGAGCGACCCATGTAGAAATATTCCAACTTTCTCAATCCCACATACGGATCAGTACAACAACACCCTCTTCTGCAACTGTTCTTTCCCTGGGAATGTGTGCCATGTCCAAACCATGGCCCTGGAGAGCAACTTATTTTCTGGAACTATTCCGCCGGAGATGGGGAGATTGATTAACATGGAAGTCCTCTACCTTCGAGCTAACAATCTCACTGGACAGTTGCCTGTGGCTCTCACTAATATGACCAAATTAAAAACACTAGATCTTAGCTTCAACAGATTGAAAGGGAGCATCCCGAATCTTGACAAGTTATTAGGATTGGTCACAATATATCTGACGAGTAACTGGCTTACTGGGCTTCCGGAGTGGATCCAAAATAGAGATAGCCGCTACATAGTAGATCTTTCTTACAACAATTTTTCAAGGGACTCTGTCCCAACTACATGTCGAGAAACCTTTAATGTGTTCAAAAGTTTCTCCAGACAGAACAACTCAATTCTTTCCAATTGCCTCTATCCATGTTCAAAAGAACAGTATTCATTGCATATAAATTGTGGTGGAAAACCAATAACCATTGGACGCATCAAGTATGAGGGGGATGAAGCCTCGGGAGGTGGAGCAAAGTTTTTTCAAGACACAGTTAATTGGGGATTTAGTAGCACTGGTGATTATGGGCTTACAAATTTTGACCATGCCTACATAGCAGACAATATTTCCATACTCAAAATGAACAACTCGGAATTGTACAGAACTGCCCGACTTTCTTATCTTTCTCTCACATATTATGCCCGTTGCTTAGCAAATGGAAATTACACTGTGAAACTACACTTTGCAGAAATAGTTCTCAGAGACAACAGGTCTTATTATGGTGTTGGAAGCCGATTTTTTGATGTCTATATTCAGGAAAAACTGGTATTGAAGGATTTTAATATTGAAAAGGAAGCACAGGGGGTTGATAAGGAAGTGATTAAAGTATTTAAAGCAGTTGTCAATGTTAGCACTTTAGAGATCCGTTTTTATTGGGCTGGGAAAGGGACTATGAATGTCCCAAAAAGAGGTACATATGGTTCTCTTATATCAGCAATCTCAGTTGAGTCTGATTTCAAGCAGCCTGGTGATAGCAACAGGAAAATATTCATAGTGGTTGGAGTTGCTTTAGTCTTATGCCTTAGCTTCATGGTTTTTGGCATTCTTTGGTTGAGAAGCTGCTTTGGAGGCAAGATCTCTAGGGAACAAGAGCTGAAAGGATTAGATCTGCAAACTGGTCTCTTTAGATTCAAACAAATCAAAGCTGCCACTAACAACTTTGATGCTGCAAACAAGCTTGGTGAAGGTGGCTTTGGAATTGTTTACAAGGGGGAATTATTAGATGGTACTACTATTGCTGTTAAGCAACTTTCATCAAAATCAAGACAAGGAAATCGTGAGTTTGTGAATGAAATAGGGATGATCTCTGGTTTGCGACATCCAAATCTTGTTAGATTGTATGGATGTTGCATCGAAGGAAATCAGTTGTTCCTGGTATATGAATATATGGAGAACAATAGCCTTGCACATTCATTGTTTGGTCCACAAGAAGGTAAACCGAAACTGGACTGGCCTAAAAGGCAAAAAATATGTATTGGCGTTGCAAAAGGGCTAGCTTTCCTGCATGAGGAATCTACACTAAAAATTGTTCATAGAGACATCAAAATGACTAACATACTGCTAGATAGGGACCTTAACCCTAAAATCTCTGACTTTGGTTTGGCCAAGCTGAACGAAGAAGACAAGACGCATATTAGCACCAGAGCAGCTGGAACCATAGGATACATGGCGCCAGAATATGCACAATGGGGTTACCTAACTGATAAAGTAGATGTTTACAGTTTTGGAGTTGTTGCATTAGAGCTCGTATCTGGCAAAAACAACATCAAATATCGGCCCAATGAGAACTGTGTATGCCTTCTAGATTGGGCCCTTGCTCTGCGACAAAAAAAAAGTATGACGGAGCTAGTGGATCCAAATTTGGGATCCGAGTTCAACAAGGAAGAAACAATGAGAATGATCAAAGTAGCACTGCTCTGCACTAATCCATCTCCAGCACTGAGACCTACAATGTCTGCAGCACTAAGCATGCTTGAAGGCCGAGCCGTTATTCATGAATCAAGTATGTATGGTGATGAACTGGGCTTCAAGGCCTTCAGAGATGAGCATCAGGAAGTGAATATTCAACAGAGCCCAGGCGAGACTCGGAGCCTCATTTATTCATCCAATGCCAAAGGGCAAGATGCCTCTTCCTCAAGGACTGTCCAGGATAGCCATACATTTAATCTCGATTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

830

Amino Acids

93.27

Weight (kDa)

8.14

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	90 - 149	3.5e-06	Leucine rich repeat
Malectin	PF11721	235 - 417	2.1e-38	Malectin domain
Pkinase	PF00069	493 - 760	2.2e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	494 - 759	1e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1981
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	2 cut(s)	317, 553
AclWI	GGATC	8 cut(s)	222, 529, 542, 1168, 2159, 2172, 2172, 2185
AcoI	YGGCCR	1 cut(s)	1914
AcsI	RAATTY	4 cut(s)	9, 163, 847, 2170
AcuI	CTGAAG	1 cut(s)	2332
AcyI	GRCGYC	1 cut(s)	1982
AfaI	GTAC	4 cut(s)	221, 911, 1225, 1540
AfiI	CCNNNNNNNGG	7 cut(s)	211, 280, 326, 1220, 1742, 1819, 2174
AflIII	ACRYGT	1 cut(s)	608
AhdI	GACNNNNNGTC	1 cut(s)	1021
AjnI	CCWGG	6 cut(s)	253, 285, 1276, 1683, 2386, 2457
AjuI	GAANNNNNNNTTGG	2 cut(s)	1488, 1520
Alw21I	GWGCWC	1 cut(s)	2058
Alw26I	GTCTC	6 cut(s)	26, 1008, 1436, 1842, 2248, 2387
AlwI	GGATC	8 cut(s)	222, 529, 542, 1168, 2159, 2172, 2172, 2185
Ama87I	CYCGRG	1 cut(s)	772
Aor13HI	TCCGGA	1 cut(s)	526
AoxI	GGCC	7 cut(s)	282, 1763, 1914, 2087, 2121, 2290, 2343
ApaI	GGGCCC	1 cut(s)	2125
ApeKI	GCWGC	6 cut(s)	1273, 1371, 1457, 1478, 1958, 2270
ApoI	RAATTY	4 cut(s)	9, 163, 847, 2170
Asp700I	GAANNNNTTC	2 cut(s)	1005, 1298
AspLEI	GCGC	1 cut(s)	1984
AspS9I	GGNCC	6 cut(s)	283, 1733, 1882, 2088, 2121, 2122
AsuHPI	GGTGA	4 cut(s)	842, 1292, 1505, 2336
AsuNHI	GCTAGC	1 cut(s)	1804
AvaI	CYCGRG	1 cut(s)	772
AvaII	GGWCC	2 cut(s)	1733, 1882
BaeGI	GKGCMC	1 cut(s)	2125
BalI	TGGCCA	1 cut(s)	1916
BamHI	GGATCC	3 cut(s)	534, 2164, 2177
BanI	GGYRCC	1 cut(s)	1981
BanII	GRGCYC	3 cut(s)	2058, 2125, 2387
BbsI	GAAGAC	1 cut(s)	1938
Bbv12I	GWGCWC	1 cut(s)	2058
BbvI	GCAGC	6 cut(s)	1285, 1358, 1444, 1465, 1970, 2282
BccI	CCATC	3 cut(s)	319, 1529, 2248
BceAI	ACGGC	1 cut(s)	2282
BciT130I	CCWGG	6 cut(s)	255, 287, 1278, 1685, 2388, 2459
BciVI	GTATCC	1 cut(s)	1967
BclI	TGATCA	1 cut(s)	2211
BcoDI	GTCTC	6 cut(s)	26, 1008, 1436, 1842, 2248, 2387
BfaI	CTAG	6 cut(s)	425, 1392, 1805, 1874, 2114, 2159
BfmI	CTRYAG	1 cut(s)	2268
BfoI	RGCGCY	1 cut(s)	1985
BfuI	GTATCC	1 cut(s)	1967
BglI	GCCNNNNNGGC	1 cut(s)	1771
BglII	AGATCT	4 cut(s)	427, 565, 1386, 1417
BisI	GCNGC	7 cut(s)	553, 1274, 1372, 1458, 1479, 1959, 2271
BlpI	GCTNAGC	2 cut(s)	138, 961
BlsI	GCNGC	7 cut(s)	554, 1275, 1373, 1459, 1480, 1960, 2272
Bme1390I	CCNGG	6 cut(s)	255, 287, 1278, 1685, 2388, 2459
Bme18I	GGWCC	2 cut(s)	1733, 1882
BmeRI	GACNNNNNGTC	1 cut(s)	1021
BmeT110I	CYCGRG	1 cut(s)	772
BmgT120I	GGNCC	6 cut(s)	283, 1733, 1882, 2088, 2121, 2122
BmiI	GGNNCC	8 cut(s)	536, 1883, 1966, 1983, 2123, 2166, 2179, 2402
BmrFI	CCNGG	6 cut(s)	255, 287, 1278, 1685, 2388, 2459
BmrI	ACTGGG	2 cut(s)	528, 2342
BmsI	GCATC	6 cut(s)	465, 756, 1465, 1671, 2368, 2425
BmtI	GCTAGC	1 cut(s)	1808
BmuI	ACTGGG	2 cut(s)	528, 2342
BpiI	GAAGAC	1 cut(s)	1938
BpmI	CTGGAG	3 cut(s)	308, 628, 2229
Bpu10I	CCTNAGC	1 cut(s)	1334
Bpu1102I	GCTNAGC	2 cut(s)	138, 961
BpuEI	CTTGAG	2 cut(s)	54, 2431
BsaBI	GATNNNNATC	1 cut(s)	2358
BsaHI	GRCGYC	1 cut(s)	1982
BsaI	GGTCTC	2 cut(s)	1436, 2248
BsaJI	CCNNGG	7 cut(s)	63, 253, 254, 279, 285, 771, 2386
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	7 cut(s)	211, 280, 326, 1220, 1742, 1819, 2174
Bse3DI	GCAATG	1 cut(s)	704
Bse8I	GATNNNNATC	1 cut(s)	2358
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	6 cut(s)	255, 287, 1278, 1685, 2388, 2459
BseDI	CCNNGG	7 cut(s)	63, 253, 254, 279, 285, 771, 2386
BseGI	GGATG	6 cut(s)	456, 769, 1617, 1630, 1661, 2414
BseJI	GATNNNNATC	1 cut(s)	2358
BseLI	CCNNNNNNNGG	7 cut(s)	211, 280, 326, 1220, 1742, 1819, 2174
BseMI	GCAATG	1 cut(s)	704
BseMII	CTCAG	4 cut(s)	129, 1024, 1266, 2243
BseSI	GKGCMC	1 cut(s)	2125
BseXI	GCAGC	6 cut(s)	1285, 1358, 1444, 1465, 1970, 2282
BseYI	CCCAGC	1 cut(s)	1190
BsgI	GTGCAG	1 cut(s)	2215
BshFI	GGCC	7 cut(s)	284, 1765, 1916, 2089, 2123, 2292, 2345
BshNI	GGYRCC	1 cut(s)	1981
BsiHKAI	GWGCWC	1 cut(s)	2058
BsiHKCI	CYCGRG	1 cut(s)	772
BsiSI	CCGG	2 cut(s)	320, 527
BslFI	GGGAC	5 cut(s)	584, 605, 1196, 1213, 1895
BslI	CCNNNNNNNGG	7 cut(s)	211, 280, 326, 1220, 1742, 1819, 2174
BsmAI	GTCTC	6 cut(s)	26, 1008, 1436, 1842, 2248, 2387
BsmBI	CGTCTC	1 cut(s)	26
BsmFI	GGGAC	5 cut(s)	584, 605, 1196, 1213, 1895
BsmI	GAATGC	1 cut(s)	1353
BsnI	GGCC	7 cut(s)	284, 1765, 1916, 2089, 2123, 2292, 2345
Bso31I	GGTCTC	2 cut(s)	1436, 2248
BsoBI	CYCGRG	1 cut(s)	772
Bsp120I	GGGCCC	1 cut(s)	2121
Bsp1286I	GDGCHC	3 cut(s)	2058, 2125, 2387
Bsp13I	TCCGGA	1 cut(s)	526
Bsp1407I	TGTACA	1 cut(s)	909
Bsp1720I	GCTNAGC	2 cut(s)	138, 961
Bsp19I	CCATGG	2 cut(s)	63, 279
BspACI	CCGC	2 cut(s)	317, 553
BspANI	GGCC	7 cut(s)	284, 1765, 1916, 2089, 2123, 2292, 2345
BspCNI	CTCAG	4 cut(s)	130, 1023, 1265, 2244
BspEI	TCCGGA	1 cut(s)	526
BspHI	TCATGA	2 cut(s)	127, 2305
BspLI	GGNNCC	8 cut(s)	536, 1883, 1966, 1983, 2123, 2166, 2179, 2402
BspMAI	CTGCAG	1 cut(s)	2272
BspOI	GCTAGC	1 cut(s)	1808
BspPI	GGATC	8 cut(s)	222, 529, 542, 1168, 2159, 2172, 2172, 2185
BspT107I	GGYRCC	1 cut(s)	1981
BspTNI	GGTCTC	2 cut(s)	1436, 2248
BsrDI	GCAATG	1 cut(s)	704
BsrGI	TGTACA	1 cut(s)	909
BssECI	CCNNGG	7 cut(s)	63, 253, 254, 279, 285, 771, 2386
BssNI	GRCGYC	1 cut(s)	1982
BssT1I	CCWWGG	2 cut(s)	63, 279
Bst2UI	CCWGG	6 cut(s)	255, 287, 1278, 1685, 2388, 2459
Bst4CI	ACNGT	9 cut(s)	37, 245, 384, 699, 805, 982, 2033, 2102, 2455
Bst6I	CTCTTC	3 cut(s)	105, 239, 2446
BstACI	GRCGYC	1 cut(s)	1982
BstAUI	TGTACA	1 cut(s)	909
BstC8I	GCNNGC	3 cut(s)	120, 1806, 2282
BstDEI	CTNAG	8 cut(s)	138, 431, 961, 1010, 1252, 1334, 2252, 2276
BstDSI	CCRYGG	2 cut(s)	63, 279
BstEII	GGTNACC	1 cut(s)	2003
BstENI	CCTNNNNNAGG	1 cut(s)	1817
BstF5I	GGATG	6 cut(s)	456, 769, 1617, 1630, 1661, 2414
BstH2I	RGCGCY	1 cut(s)	1985
BstHHI	GCGC	1 cut(s)	1984
BstMAI	GTCTC	6 cut(s)	26, 1008, 1436, 1842, 2248, 2387
BstMWI	GCNNNNNNNGC	4 cut(s)	520, 866, 1380, 1771
BstNI	CCWGG	6 cut(s)	255, 287, 1278, 1685, 2388, 2459
BstNSI	RCATGY	2 cut(s)	612, 2284
BstPI	GGTNACC	1 cut(s)	2003
BstSCI	CCNGG	6 cut(s)	253, 285, 1276, 1683, 2386, 2457
BstSFI	CTRYAG	1 cut(s)	2268
BstSLI	GKGCMC	1 cut(s)	2125
BstV1I	GCAGC	6 cut(s)	1285, 1358, 1444, 1465, 1970, 2282
BstV2I	GAAGAC	1 cut(s)	1938
BstX2I	RGATCY	8 cut(s)	427, 534, 565, 1173, 1386, 1417, 2164, 2177
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	8 cut(s)	427, 534, 565, 1173, 1386, 1417, 2164, 2177
BsuI	GTATCC	1 cut(s)	1967
BsuRI	GGCC	7 cut(s)	284, 1765, 1916, 2089, 2123, 2292, 2345
BtgI	CCRYGG	2 cut(s)	63, 279
BtsCI	GGATG	6 cut(s)	456, 769, 1617, 1630, 1661, 2414
BtsI	GCAGTG	1 cut(s)	2222
BtsIMutI	CAGTG	6 cut(s)	33, 375, 825, 978, 2222, 2249
Cac8I	GCNNGC	3 cut(s)	120, 1806, 2282
CciI	TCATGA	2 cut(s)	127, 2305
CfoI	GCGC	1 cut(s)	1984
Cfr13I	GGNCC	6 cut(s)	283, 1733, 1882, 2088, 2121, 2122
CseI	GACGC	2 cut(s)	753, 1948
Csp6I	GTAC	4 cut(s)	220, 910, 1224, 1539
CviQI	GTAC	4 cut(s)	220, 910, 1224, 1539
DdeI	CTNAG	8 cut(s)	138, 431, 961, 1010, 1252, 1334, 2252, 2276
DinI	GGCGCC	1 cut(s)	1983
DraI	TTTAAA	1 cut(s)	1144
DriI	GACNNNNNGTC	1 cut(s)	1021
EaeI	YGGCCR	1 cut(s)	1914
Eam1104I	CTCTTC	3 cut(s)	105, 239, 2446
Eam1105I	GACNNNNNGTC	1 cut(s)	1021
EarI	CTCTTC	3 cut(s)	105, 239, 2446
EciI	GGCGGA	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	2056
Eco130I	CCWWGG	2 cut(s)	63, 279
Eco147I	AGGCCT	1 cut(s)	2345
Eco24I	GRGCYC	3 cut(s)	2058, 2125, 2387
Eco31I	GGTCTC	2 cut(s)	1436, 2248
Eco47I	GGWCC	2 cut(s)	1733, 1882
Eco53kI	GAGCTC	1 cut(s)	2056
Eco57I	CTGAAG	1 cut(s)	2332
Eco88I	CYCGRG	1 cut(s)	772
Eco91I	GGTNACC	1 cut(s)	2003
EcoICRI	GAGCTC	1 cut(s)	2056
EcoNI	CCTNNNNNAGG	1 cut(s)	1817
EcoO109I	RGGNCCY	2 cut(s)	1882, 2122
EcoO65I	GGTNACC	1 cut(s)	2003
EcoRII	CCWGG	6 cut(s)	253, 285, 1276, 1683, 2386, 2457
EcoT14I	CCWWGG	2 cut(s)	63, 279
EcoT38I	GRGCYC	3 cut(s)	2058, 2125, 2387
EgeI	GGCGCC	1 cut(s)	1983
EheI	GGCGCC	1 cut(s)	1983
ErhI	CCWWGG	2 cut(s)	63, 279
Esp3I	CGTCTC	1 cut(s)	26
FaqI	GGGAC	5 cut(s)	584, 605, 1196, 1213, 1895
FauNDI	CATATG	1 cut(s)	1228
FbaI	TGATCA	1 cut(s)	2211
Fnu4HI	GCNGC	7 cut(s)	553, 1274, 1372, 1458, 1479, 1959, 2271
FokI	GGATG	6 cut(s)	443, 776, 1617, 1624, 1668, 2401
FriOI	GRGCYC	3 cut(s)	2058, 2125, 2387
Fsp4HI	GCNGC	7 cut(s)	553, 1274, 1372, 1458, 1479, 1959, 2271
FspBI	CTAG	6 cut(s)	425, 1392, 1805, 1874, 2114, 2159
GlaI	GCGC	1 cut(s)	1983
GluI	GCNGC	7 cut(s)	553, 1274, 1372, 1458, 1479, 1959, 2271
GsaI	CCCAGC	1 cut(s)	1194
GsuI	CTGGAG	3 cut(s)	308, 628, 2229
HaeII	RGCGCY	1 cut(s)	1985
HaeIII	GGCC	7 cut(s)	284, 1765, 1916, 2089, 2123, 2292, 2345
HapII	CCGG	2 cut(s)	320, 527
HgaI	GACGC	2 cut(s)	753, 1948
HhaI	GCGC	1 cut(s)	1984
Hin1I	GRCGYC	1 cut(s)	1982
Hin6I	GCGC	1 cut(s)	1982
HinP1I	GCGC	1 cut(s)	1982
HindIII	AAGCTT	1 cut(s)	1487
HinfI	GANTC	9 cut(s)	97, 463, 593, 1259, 1440, 1823, 2309, 2395, 2483
HpaII	CCGG	2 cut(s)	320, 527
HphI	GGTGA	4 cut(s)	842, 1292, 1505, 2336
Hpy166II	GTNNAC	4 cut(s)	1516, 1736, 1748, 2029
Hpy188I	TCNGA	8 cut(s)	501, 904, 1013, 1264, 1903, 2182, 2351, 2400
Hpy8I	GTNNAC	4 cut(s)	1516, 1736, 1748, 2029
HpyAV	CCTTC	9 cut(s)	134, 368, 1078, 1490, 1661, 1736, 2120, 2282, 2356
HpyCH4III	ACNGT	9 cut(s)	37, 245, 384, 699, 805, 982, 2033, 2102, 2455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	520, 866, 1380, 1771
HpyF3I	CTNAG	8 cut(s)	138, 431, 961, 1010, 1252, 1334, 2252, 2276
Hsp92I	GRCGYC	1 cut(s)	1982
HspAI	GCGC	1 cut(s)	1982
KasI	GGCGCC	1 cut(s)	1981
Kpn2I	TCCGGA	1 cut(s)	526
Ksp22I	TGATCA	1 cut(s)	2211
LmnI	GCTCC	4 cut(s)	453, 782, 2155, 2400
Lsp1109I	GCAGC	6 cut(s)	1285, 1358, 1444, 1465, 1970, 2282
LweI	GCATC	6 cut(s)	465, 756, 1465, 1671, 2368, 2425
MaeI	CTAG	6 cut(s)	425, 1392, 1805, 1874, 2114, 2159
MaeIII	GTNAC	4 cut(s)	73, 487, 506, 2003
MboII	GAAGA	9 cut(s)	34, 37, 92, 226, 1940, 1943, 2207, 2433, 2478
MfeI	CAATTG	1 cut(s)	670
MflI	RGATCY	8 cut(s)	427, 534, 565, 1173, 1386, 1417, 2164, 2177
MhlI	GDGCHC	3 cut(s)	2058, 2125, 2387
MlsI	TGGCCA	1 cut(s)	1916
MluNI	TGGCCA	1 cut(s)	1916
Mly113I	GGCGCC	1 cut(s)	1982
MlyI	GAGTC	4 cut(s)	91, 587, 1268, 2389
MmeI	TCCRAC	3 cut(s)	215, 1018, 1291
Mox20I	TGGCCA	1 cut(s)	1916
MroI	TCCGGA	1 cut(s)	526
MroXI	GAANNNNTTC	2 cut(s)	1005, 1298
MscI	TGGCCA	1 cut(s)	1916
MslI	CAYNNNNRTG	3 cut(s)	62, 404, 1856
Msp20I	TGGCCA	1 cut(s)	1916
MspA1I	CMGCKG	2 cut(s)	107, 1961
MspI	CCGG	2 cut(s)	320, 527
MspR9I	CCNGG	6 cut(s)	255, 287, 1278, 1685, 2388, 2459
MunI	CAATTG	1 cut(s)	670
Mva1269I	GAATGC	1 cut(s)	1353
MvaI	CCWGG	6 cut(s)	255, 287, 1278, 1685, 2388, 2459
MwoI	GCNNNNNNNGC	4 cut(s)	520, 866, 1380, 1771
NarI	GGCGCC	1 cut(s)	1982
NcoI	CCATGG	2 cut(s)	63, 279
NdeI	CATATG	1 cut(s)	1228
NheI	GCTAGC	1 cut(s)	1804
NlaIV	GGNNCC	8 cut(s)	536, 1883, 1966, 1983, 2123, 2166, 2179, 2402
NmeAIII	GCCGAG	1 cut(s)	2318
NmuCI	GTSAC	2 cut(s)	73, 487
NspI	RCATGY	2 cut(s)	612, 2284
PaeI	GCATGC	1 cut(s)	2284
PagI	TCATGA	2 cut(s)	127, 2305
PasI	CCCWGGG	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	2345
PciI	ACATGT	1 cut(s)	608
PctI	GAATGC	1 cut(s)	1353
PdmI	GAANNNNTTC	2 cut(s)	1005, 1298
PfeI	GAWTC	5 cut(s)	463, 1440, 1823, 2309, 2483
PflFI	GACNNNGTC	1 cut(s)	596
PflMI	CCANNNNNTGG	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	2457
PkrI	GCNGC	7 cut(s)	554, 1275, 1373, 1459, 1480, 1960, 2272
PleI	GAGTC	4 cut(s)	91, 587, 1267, 2389
PluTI	GGCGCC	1 cut(s)	1985
PpsI	GAGTC	4 cut(s)	91, 587, 1267, 2389
PpuMI	RGGWCCY	1 cut(s)	1882
PscI	ACATGT	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	2058
Psp5II	RGGWCCY	1 cut(s)	1882
Psp6I	CCWGG	6 cut(s)	253, 285, 1276, 1683, 2386, 2457
PspEI	GGTNACC	1 cut(s)	2003
PspFI	CCCAGC	1 cut(s)	1190
PspGI	CCWGG	6 cut(s)	253, 285, 1276, 1683, 2386, 2457
PspN4I	GGNNCC	8 cut(s)	536, 1883, 1966, 1983, 2123, 2166, 2179, 2402
PspOMI	GGGCCC	1 cut(s)	2121
PspPI	GGNCC	6 cut(s)	283, 1733, 1882, 2088, 2121, 2122
PspPPI	RGGWCCY	1 cut(s)	1882
PsrI	GAACNNNNNNTAC	2 cut(s)	1216, 1248
PstI	CTGCAG	1 cut(s)	2272
PsuI	RGATCY	8 cut(s)	427, 534, 565, 1173, 1386, 1417, 2164, 2177
PsyI	GACNNNGTC	1 cut(s)	596
PvuII	CAGCTG	2 cut(s)	107, 1961
RsaI	GTAC	4 cut(s)	221, 911, 1225, 1540
RsaNI	GTAC	4 cut(s)	220, 910, 1224, 1539
RseI	CAYNNNNRTG	3 cut(s)	62, 404, 1856
SacI	GAGCTC	1 cut(s)	2058
SatI	GCNGC	7 cut(s)	553, 1274, 1372, 1458, 1479, 1959, 2271
Sau96I	GGNCC	6 cut(s)	283, 1733, 1882, 2088, 2121, 2122
SchI	GAGTC	4 cut(s)	91, 587, 1268, 2389
ScrFI	CCNGG	6 cut(s)	255, 287, 1278, 1685, 2388, 2459
SduI	GDGCHC	3 cut(s)	2058, 2125, 2387
SfaNI	GCATC	6 cut(s)	465, 756, 1465, 1671, 2368, 2425
SfcI	CTRYAG	1 cut(s)	2268
SfoI	GGCGCC	1 cut(s)	1983
SinI	GGWCC	2 cut(s)	1733, 1882
SmiMI	CAYNNNNRTG	3 cut(s)	62, 404, 1856
SmlI	CTYRAG	2 cut(s)	69, 2446
SmoI	CTYRAG	2 cut(s)	69, 2446
SphI	GCATGC	1 cut(s)	2284
SseBI	AGGCCT	1 cut(s)	2345
SsiI	CCGC	2 cut(s)	317, 553
SspDI	GGCGCC	1 cut(s)	1981
SspI	AATATT	5 cut(s)	187, 877, 1096, 1299, 2374
SspMI	CTAG	6 cut(s)	425, 1392, 1805, 1874, 2114, 2159
SstI	GAGCTC	1 cut(s)	2058
StuI	AGGCCT	1 cut(s)	2345
StyD4I	CCNGG	6 cut(s)	253, 285, 1276, 1683, 2386, 2457
StyI	CCWWGG	2 cut(s)	63, 279
TaaI	ACNGT	9 cut(s)	37, 245, 384, 699, 805, 982, 2033, 2102, 2455
TaqI	TCGA	4 cut(s)	361, 613, 1665, 2481
TatI	WGTACW	2 cut(s)	219, 909
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	5 cut(s)	463, 1440, 1823, 2309, 2483
TscAI	CASTG	6 cut(s)	33, 382, 832, 985, 2229, 2256
TseFI	GTSAC	2 cut(s)	73, 487
TseI	GCWGC	6 cut(s)	1273, 1371, 1457, 1478, 1958, 2270
Tsp45I	GTSAC	2 cut(s)	73, 487
TspGWI	ACGGA	3 cut(s)	227, 1166, 2168
TspRI	CASTG	6 cut(s)	33, 382, 832, 985, 2229, 2256
Tth111I	GACNNNGTC	1 cut(s)	596
Van91I	CCANNNNNTGG	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	1733, 1882
XagI	CCTNNNNNAGG	1 cut(s)	1817
XapI	RAATTY	4 cut(s)	9, 163, 847, 2170
XbaI	TCTAGA	1 cut(s)	2113
XceI	RCATGY	2 cut(s)	612, 2284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1975
XmnI	GAANNNNTTC	2 cut(s)	1005, 1298
XspI	CTAG	6 cut(s)	425, 1392, 1805, 1874, 2114, 2159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.