Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003701.1

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

2753 .. 5047

Gene Structure 2295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003701.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgcatgattcggaaagtgataagagatcggctatcgcaagctcatcagtggatctaaagacaatcaagagactgtttagtggactggatcggaatgctccgatttggtttgggttggataaagccgtcttatggaggggggcagttggatggggcggtgacggttgctggcatgatgaggaggtcaataaggtggagggacaaccagcgtgtgctcggtgtggcgagtatactgccaatggtcgaacgtttggagttgttgcattagagctcgtatctggaaaaaacaacatcaaatatcgaccaaatgagaattatgtatgccttctagattgggcccttgttttgcaacaaaaagaaaacctgatggagctagtggatccaaagttgggatccaagttcaacaaggaagaggcaatgagaatgattaaagtagctctactatgcaccaatccatcaccagcactgagacctacaatgtctgcagcactaagtatgcttgaaggccgagttgttattcatgaatcaagtagaaatctgagtatgtatggtgatgaactggggtttaaggccctaagagacgactataatgatctgaatattcaacagagcccaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

206

Amino Acids

22.98

Weight (kDa)

6.32

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	1 cut(s)	156
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	6 cut(s)	60, 96, 374, 387, 387, 400
AfiI	CCNNNNNNNGG	2 cut(s)	132, 389
AgsI	TTSAA	3 cut(s)	403, 503, 605
AluBI	AGCT	4 cut(s)	42, 271, 373, 437
AluI	AGCT	4 cut(s)	42, 271, 373, 437
Alw21I	GWGCWC	2 cut(s)	217, 273
Alw26I	GTCTC	3 cut(s)	64, 463, 573
AlwI	GGATC	6 cut(s)	60, 96, 374, 387, 387, 400
AoxI	GGCC	3 cut(s)	336, 505, 570
ApaI	GGGCCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	485
AspS9I	GGNCC	3 cut(s)	336, 337, 571
AsuHPI	GGTGA	3 cut(s)	170, 450, 563
BaeGI	GKGCMC	1 cut(s)	340
BamHI	GGATCC	2 cut(s)	379, 392
BanII	GRGCYC	3 cut(s)	273, 340, 614
Bbv12I	GWGCWC	2 cut(s)	217, 273
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	3 cut(s)	144, 361, 463
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BcoDI	GTCTC	3 cut(s)	64, 463, 573
BfaI	CTAG	2 cut(s)	329, 374
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
BmgT120I	GGNCC	3 cut(s)	336, 337, 571
BmiI	GGNNCC	3 cut(s)	338, 381, 394
BmrI	ACTGGG	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	569
BsaI	GGTCTC	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 389
Bse1I	ACTGG	2 cut(s)	90, 564
Bse3DI	GCAATG	1 cut(s)	423
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	132, 389
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	458, 530
BseNI	ACTGG	2 cut(s)	90, 564
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	497
BshFI	GGCC	3 cut(s)	338, 507, 572
BsiHKAI	GWGCWC	2 cut(s)	217, 273
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	132, 389
BsmAI	GTCTC	3 cut(s)	64, 463, 573
BsmBI	CGTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	338, 507, 572
Bso31I	GGTCTC	1 cut(s)	463
Bsp120I	GGGCCC	1 cut(s)	336
Bsp1286I	GDGCHC	4 cut(s)	217, 273, 340, 614
Bsp143I	GATC	6 cut(s)	26, 52, 88, 379, 392, 592
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	3 cut(s)	338, 507, 572
BspCNI	CTCAG	2 cut(s)	459, 531
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	3 cut(s)	338, 381, 394
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	6 cut(s)	60, 96, 374, 387, 387, 400
BspTNI	GGTCTC	1 cut(s)	463
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	90, 564
BssMI	GATC	6 cut(s)	26, 52, 88, 379, 392, 592
BssNAI	GTATAC	1 cut(s)	231
Bst1107I	GTATAC	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	75, 164
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	40, 170
BstDEI	CTNAG	4 cut(s)	467, 491, 539, 575
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	6 cut(s)	29, 55, 91, 382, 395, 595
BstMAI	GTCTC	3 cut(s)	64, 463, 573
BstMBI	GATC	6 cut(s)	26, 52, 88, 379, 392, 592
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	497
BstX2I	RGATCY	3 cut(s)	52, 379, 392
BstYI	RGATCY	3 cut(s)	52, 379, 392
BstZ17I	GTATAC	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	338, 507, 572
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	54, 464
Cac8I	GCNNGC	2 cut(s)	40, 170
CciI	TCATGA	1 cut(s)	520
Cfr13I	GGNCC	3 cut(s)	336, 337, 571
CviAII	CATG	3 cut(s)	5, 173, 521
DdeI	CTNAG	4 cut(s)	467, 491, 539, 575
DpnI	GATC	6 cut(s)	28, 54, 90, 381, 394, 594
DpnII	GATC	6 cut(s)	26, 52, 88, 379, 392, 592
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	3 cut(s)	273, 340, 614
Eco31I	GGTCTC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	2 cut(s)	337, 571
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	273, 340, 614
Esp3I	CGTCTC	1 cut(s)	573
FaeI	CATG	3 cut(s)	8, 176, 524
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	3 cut(s)	4, 172, 520
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	3 cut(s)	273, 340, 614
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	329, 374
GluI	GCNGC	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	338, 507, 572
Hin1II	CATG	3 cut(s)	8, 176, 524
HinfI	GANTC	2 cut(s)	8, 524
HphI	GGTGA	3 cut(s)	170, 450, 563
Hpy166II	GTNNAC	2 cut(s)	83, 231
Hpy188I	TCNGA	5 cut(s)	13, 93, 102, 540, 597
Hpy188III	TCNNGA	4 cut(s)	67, 279, 329, 521
Hpy8I	GTNNAC	2 cut(s)	83, 231
HpyAV	CCTTC	2 cut(s)	335, 497
HpyCH4III	ACNGT	2 cut(s)	75, 164
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	5 cut(s)	4, 263, 349, 447, 485
HpyF3I	CTNAG	4 cut(s)	467, 491, 539, 575
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	8, 176, 524
Kzo9I	GATC	6 cut(s)	26, 52, 88, 379, 392, 592
LmnI	GCTCC	2 cut(s)	103, 370
LpnPI	CCDG	7 cut(s)	71, 154, 219, 264, 377, 474, 545
Lsp1109I	GCAGC	1 cut(s)	497
MaeI	CTAG	2 cut(s)	329, 374
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	6 cut(s)	28, 54, 90, 381, 394, 594
MboI	GATC	6 cut(s)	26, 52, 88, 379, 392, 592
MboII	GAAGA	1 cut(s)	422
MflI	RGATCY	3 cut(s)	52, 379, 392
MhlI	GDGCHC	4 cut(s)	217, 273, 340, 614
MluCI	AATT	1 cut(s)	313
MmeI	TCCRAC	2 cut(s)	96, 127
MnlI	CCTC	5 cut(s)	129, 172, 175, 190, 406
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	429, 567
Mva1269I	GAATGC	1 cut(s)	100
NdeII	GATC	6 cut(s)	26, 52, 88, 379, 392, 592
NlaIII	CATG	3 cut(s)	8, 176, 524
NlaIV	GGNNCC	3 cut(s)	338, 381, 394
NmeAIII	GCCGAG	1 cut(s)	533
NmuCI	GTSAC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	520
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	8, 524
PkrI	GCNGC	1 cut(s)	487
Psp124BI	GAGCTC	1 cut(s)	273
Psp1406I	AACGTT	1 cut(s)	248
PspN4I	GGNNCC	3 cut(s)	338, 381, 394
PspOMI	GGGCCC	1 cut(s)	336
PspPI	GGNCC	3 cut(s)	336, 337, 571
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	3 cut(s)	52, 379, 392
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	429, 567
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	6 cut(s)	26, 52, 88, 379, 392, 592
Sau96I	GGNCC	3 cut(s)	336, 337, 571
SduI	GDGCHC	4 cut(s)	217, 273, 340, 614
SetI	ASST	9 cut(s)	44, 186, 195, 251, 273, 366, 375, 439, 475
SfcI	CTRYAG	1 cut(s)	483
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	1 cut(s)	156
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	329, 374
SstI	GAGCTC	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	75, 164
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	2 cut(s)	244, 301
TasI	AATT	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	8, 524
Tru1I	TTAA	2 cut(s)	429, 567
Tru9I	TTAA	2 cut(s)	429, 567
TscAI	CASTG	2 cut(s)	54, 471
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	509, 537, 570
TspRI	CASTG	2 cut(s)	54, 471
XbaI	TCTAGA	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	2 cut(s)	329, 374
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.