Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

26555984 .. 26556169

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGATGAAGCCCGTGAGTTTGGTGATGTAGTCATAAAGAACTTTACTACTCTTGTAACTAATAATACATTGGAGATTCGTTTATATTGGGCCGGGAAAGGAACGACAGGCATCCCTCTTAGAGGAGTCTATGGTCCTCTTATTTCAGCTATTTCAGTAAACCCAAGTAAGTTTTCACTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

62

Amino Acids

6.69

Weight (kDa)

8.14

Isoelectric Point (pI)

-5.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	2 - 51	3.3e-07	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	122
AjuI	GAANNNNNNNTTGG	1 cut(s)	157
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
AoxI	GGCC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	90, 134
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	90, 134
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
BseGI	GGATG	2 cut(s)	10, 111
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	119
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	10, 111
BstSCI	CCNGG	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	10, 111
Cfr13I	GGNCC	2 cut(s)	90, 134
CviJI	RGCY	3 cut(s)	11, 92, 149
CviKI_1	RGCY	3 cut(s)	11, 92, 149
DdeI	CTNAG	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	120
FaiI	YATR	3 cut(s)	35, 85, 132
FokI	GGATG	2 cut(s)	17, 98
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	93
HinfI	GANTC	2 cut(s)	76, 126
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	160
Hpy8I	GTNNAC	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	119
LpnPI	CCDG	2 cut(s)	93, 106
LweI	GCATC	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	55
MluCI	AATT	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	116, 126, 147
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	94
NciI	CCSGG	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	90, 134
Sau96I	GGNCC	2 cut(s)	90, 134
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	1 cut(s)	151
SfaNI	GCATC	1 cut(s)	120
SgeI	CNNG	7 cut(s)	24, 26, 65, 105, 106, 120, 177
SinI	GGWCC	1 cut(s)	134
Sse9I	AATT	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	92
TasI	AATT	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	134
XagI	CCTNNNNNAGG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.