Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

1316375 .. 1318746

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01431.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAGAACAATAGTCTTGCACATACCTTGTTTGGTAAGCTGGCAAATTGTCCAGAAGATGATAAACTGAAATTGGACTGGCCTACAAGGCAAAAAATATGTATTGGCATTGCAAGAGGGCTAGCTTTCCTGCATGAGGAATCAACACTGAAAATTGTTCACAGAGACATCAAAATGAGTAATATACTGCTAGATAGAGACCTTAACCCTAAAATCTCCGACTTTGGATTGGCCAAGCTGGACGAAGAGGAGAAGACGCATATTAGTACCAGAGTAGCTGGAACTATAGGATACATGGCGCCAGAATATGCTTTGTGGGGTCACTTAACTGATAAAGTAGATGTTTATAGTTTTGGAGTTGTTGCGTTAGAGCTTGTATCTGGCAAAAACAACGTCAAATTTCGGCATGATGAGAATTATGTTTGCCTTCTAGATTATGCCCTTGTTTTGCAACAAAAAGAAAAACTGATGGAGCTAGTGGATCCAAAGCTGGAATCCAAGTTCAACAAGGAAGAGGCAATGAGAATGATTAAAGTAGCTCTACTATGCACCCATCCATCACCAGCATTGAGACCTACAATATCTGCAGCACTAAGCATGCTTGAAGGCCGAGCAGTTATTCACGAGTTAAATACAAGCTCCAGTATGTATAGTGATCATAAGCTAGCGTTTGAGTCCTTCAGAGATGAGTATCATGATGTGAGTATTCAACAGAGACTTCTGCCTCAAGGGCCAGAGGCCTCTTCCTCAAGGACTGTCCATGATAGCTATACATTTAACCTTGATTGTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

265

Amino Acids

29.9

Weight (kDa)

5.88

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	92 - 359	1.2e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	93 - 358	9.9e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AclWI	GGATC	2 cut(s)	476, 489
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	664
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	505, 605, 710
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
Alw26I	GTCTC	4 cut(s)	159, 192, 565, 709
AlwI	GGATC	2 cut(s)	476, 489
AoxI	GGCC	5 cut(s)	80, 231, 607, 731, 738
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	1 cut(s)	398
ArsI	GACNNNNNNTTYG	2 cut(s)	378, 410
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	731
AsuHPI	GGTGA	1 cut(s)	552
AsuNHI	GCTAGC	2 cut(s)	121, 664
BalI	TGGCCA	1 cut(s)	233
BamHI	GGATCC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	3 cut(s)	463, 561, 565
BciVI	GTATCC	1 cut(s)	284
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	4 cut(s)	159, 192, 565, 709
BfaI	CTAG	5 cut(s)	122, 191, 431, 476, 665
BfmI	CTRYAG	2 cut(s)	285, 585
BfoI	RGCGCY	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	284
BglI	GCCNNNNNGGC	2 cut(s)	88, 730
BisI	GCNGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	2 cut(s)	300, 483
BmtI	GCTAGC	2 cut(s)	125, 668
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	625
BpuEI	CTTGAG	2 cut(s)	711, 733
BsaBI	GATNNNNATC	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	299
BsaI	GGTCTC	2 cut(s)	192, 565
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	83, 642
Bse3DI	GCAATG	2 cut(s)	108, 525
Bse8I	GATNNNNATC	1 cut(s)	690
BseGI	GGATG	1 cut(s)	553
BseJI	GATNNNNATC	1 cut(s)	690
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	2 cut(s)	108, 525
BseNI	ACTGG	2 cut(s)	83, 642
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	599
BshFI	GGCC	5 cut(s)	82, 233, 609, 733, 740
BshNI	GGYRCC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	4 cut(s)	159, 192, 565, 709
BsnI	GGCC	5 cut(s)	82, 233, 609, 733, 740
Bso31I	GGTCTC	2 cut(s)	192, 565
Bsp143I	GATC	2 cut(s)	481, 655
BspANI	GGCC	5 cut(s)	82, 233, 609, 733, 740
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	300, 483
BspMAI	CTGCAG	1 cut(s)	589
BspOI	GCTAGC	2 cut(s)	125, 668
BspPI	GGATC	2 cut(s)	476, 489
BspT107I	GGYRCC	1 cut(s)	298
BspTNI	GGTCTC	2 cut(s)	192, 565
BsrDI	GCAATG	2 cut(s)	108, 525
BsrI	ACTGG	2 cut(s)	83, 642
BssMI	GATC	2 cut(s)	481, 655
BssNI	GRCGYC	1 cut(s)	299
BssSI	CACGAG	1 cut(s)	623
Bst2BI	CACGAG	1 cut(s)	623
Bst4CI	ACNGT	1 cut(s)	757
Bst6I	CTCTTC	3 cut(s)	240, 507, 748
BstACI	GRCGYC	1 cut(s)	299
BstC8I	GCNNGC	4 cut(s)	42, 123, 599, 666
BstDEI	CTNAG	1 cut(s)	593
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	553
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	2 cut(s)	484, 658
BstMAI	GTCTC	4 cut(s)	159, 192, 565, 709
BstMBI	GATC	2 cut(s)	481, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 730
BstNSI	RCATGY	1 cut(s)	601
BstSFI	CTRYAG	2 cut(s)	285, 585
BstV1I	GCAGC	1 cut(s)	599
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	5 cut(s)	82, 233, 609, 733, 740
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	4 cut(s)	42, 123, 599, 666
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	731
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	6 cut(s)	134, 295, 407, 598, 695, 761
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	593
DinI	GGCGCC	1 cut(s)	300
DpnI	GATC	2 cut(s)	483, 657
DpnII	GATC	2 cut(s)	481, 655
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	3 cut(s)	240, 507, 748
EarI	CTCTTC	3 cut(s)	240, 507, 748
Eco147I	AGGCCT	1 cut(s)	740
Eco31I	GGTCTC	2 cut(s)	192, 565
Eco57I	CTGAAG	1 cut(s)	664
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EgeI	GGCGCC	1 cut(s)	300
EheI	GGCGCC	1 cut(s)	300
FaeI	CATG	6 cut(s)	137, 298, 410, 601, 698, 764
FatI	CATG	6 cut(s)	133, 294, 406, 597, 694, 760
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	1 cut(s)	588
FokI	GGATG	1 cut(s)	540
Fsp4HI	GCNGC	1 cut(s)	588
FspBI	CTAG	5 cut(s)	122, 191, 431, 476, 665
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	625
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	5 cut(s)	82, 233, 609, 733, 740
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	6 cut(s)	137, 298, 410, 601, 698, 764
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	3 cut(s)	140, 494, 674
HphI	GGTGA	1 cut(s)	552
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	220, 683
Hpy188III	TCNNGA	4 cut(s)	53, 431, 623, 695
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	3 cut(s)	437, 599, 688
HpyCH4III	ACNGT	1 cut(s)	757
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	6 cut(s)	20, 113, 133, 451, 549, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 730
HpyF3I	CTNAG	1 cut(s)	593
HpySE526I	ACGT	1 cut(s)	393
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	6 cut(s)	137, 298, 410, 601, 698, 764
HspAI	GCGC	1 cut(s)	299
KasI	GGCGCC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	2 cut(s)	481, 655
LmnI	GCTCC	2 cut(s)	472, 644
Lsp1109I	GCAGC	1 cut(s)	599
MaeI	CTAG	5 cut(s)	122, 191, 431, 476, 665
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	2 cut(s)	483, 657
MboI	GATC	2 cut(s)	481, 655
MboII	GAAGA	5 cut(s)	68, 257, 265, 524, 735
MflI	RGATCY	1 cut(s)	481
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	5 cut(s)	46, 71, 153, 398, 415
MluNI	TGGCCA	1 cut(s)	233
Mly113I	GGCGCC	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	8 cut(s)	110, 130, 241, 508, 730, 735, 751, 757
Mox20I	TGGCCA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	5 cut(s)	204, 326, 531, 629, 777
MslI	CAYNNNNRTG	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	88, 730
NarI	GGCGCC	1 cut(s)	299
NdeII	GATC	2 cut(s)	481, 655
NheI	GCTAGC	2 cut(s)	121, 664
NlaIII	CATG	6 cut(s)	137, 298, 410, 601, 698, 764
NlaIV	GGNNCC	2 cut(s)	300, 483
NmeAIII	GCCGAG	1 cut(s)	635
NmuCI	GTSAC	1 cut(s)	320
NspI	RCATGY	1 cut(s)	601
PaeI	GCATGC	1 cut(s)	601
PagI	TCATGA	1 cut(s)	694
PceI	AGGCCT	1 cut(s)	740
PfeI	GAWTC	2 cut(s)	140, 494
PkrI	GCNGC	1 cut(s)	589
PleI	GAGTC	1 cut(s)	682
PluTI	GGCGCC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	682
PspN4I	GGNNCC	2 cut(s)	300, 483
PspPI	GGNCC	1 cut(s)	731
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	5 cut(s)	204, 326, 531, 629, 777
SatI	GCNGC	1 cut(s)	588
Sau3AI	GATC	2 cut(s)	481, 655
Sau96I	GGNCC	1 cut(s)	731
SchI	GAGTC	1 cut(s)	683
SfcI	CTRYAG	2 cut(s)	285, 585
SfoI	GGCGCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	726, 748
SmoI	CTYRAG	2 cut(s)	726, 748
SphI	GCATGC	1 cut(s)	601
Sse9I	AATT	5 cut(s)	46, 71, 153, 398, 415
SseBI	AGGCCT	1 cut(s)	740
SspDI	GGCGCC	1 cut(s)	298
SspMI	CTAG	5 cut(s)	122, 191, 431, 476, 665
StuI	AGGCCT	1 cut(s)	740
TaaI	ACNGT	1 cut(s)	757
TaiI	ACGT	1 cut(s)	396
TasI	AATT	5 cut(s)	46, 71, 153, 398, 415
TfiI	GAWTC	2 cut(s)	140, 494
Tru1I	TTAA	5 cut(s)	204, 326, 531, 629, 777
Tru9I	TTAA	5 cut(s)	204, 326, 531, 629, 777
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	1 cut(s)	153
XagI	CCTNNNNNAGG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	430
XceI	RCATGY	1 cut(s)	601
XspI	CTAG	5 cut(s)	122, 191, 431, 476, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.