Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

14125516 .. 14130983

Gene Structure 5468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGACAAGGTCCAAGGGCTTCTATGCCGCGAGAGGCGCCGAAGGCAACCGAAGAAATCACCGTCCCGTAAGCCGCCGACGACTCCTTACTCCTCTATGACACCATCGGCTTTAGCTCCTCCTTTGCTTCAGCCCCTTCGTTGTCGCCATTTGGCACCATCCTCTATTCTTCCTCTTCGTTCTACACCGACTCCTCGCTCTATTCCTCCTCCTCATCCTCTTGGTTCTTCGAATCCGCGAACTCAACACCTCGTCCTCCATCTTTTTCGAGTCGAGCCAGCTCTTGTTCCTCCTCTTCGTTCTACGCCTCCTCTTCGCTCTATTCCTCCTCTTCATCATCTTGGTTCTTCGAATCCAAGCGAACTCGACGCCTTTTCTTTCTTCGACGGTGACGCCGTGATGGACCGACGGTGCGCGGTGAGTCCGGGTTTCGAGAAACTTGTATGGAAGGATTTTGACATCGTAAAGGAAGCACCAGGGGTTGATAAGGTAGTCATTAAGGTAACAAAGGCAGTTCAAGTTACAAACAAAACTCTAGAGATTCGGTTTCATTGGTCCGGGAAAGGCACAACAGCATCACCTAGTAGAGGAATCTATGGTCCCCTTATATCAGCCATTTCTATAGAGCTCGGTAATCTTCTCGAATTTGCATACACACTTGGTCTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

223

Amino Acids

24.61

Weight (kDa)

10.28

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	146 - 206	2.2e-09	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	36, 154
AccII	CGCG	3 cut(s)	30, 238, 416
AciI	CCGC	4 cut(s)	28, 74, 236, 416
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	3 cut(s)	37, 369, 393
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	3 cut(s)	116, 281, 628
AluI	AGCT	3 cut(s)	116, 281, 628
Alw21I	GWGCWC	1 cut(s)	630
ApoI	RAATTY	1 cut(s)	644
AspLEI	GCGC	2 cut(s)	39, 416
AspS9I	GGNCC	4 cut(s)	10, 403, 555, 599
AsuC2I	CCSGG	2 cut(s)	426, 559
AsuHPI	GGTGA	4 cut(s)	51, 401, 430, 570
AsuII	TTCGAA	2 cut(s)	230, 350
AvaII	GGWCC	4 cut(s)	10, 403, 555, 599
BanI	GGYRCC	2 cut(s)	36, 154
BanII	GRGCYC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	630
BccI	CCATC	4 cut(s)	112, 166, 267, 394
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	2 cut(s)	426, 559
BfaI	CTAG	2 cut(s)	536, 582
BfmI	CTRYAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	40
BisI	GCNGC	2 cut(s)	28, 74
BlsI	GCNGC	2 cut(s)	29, 75
Bme1390I	CCNGG	3 cut(s)	426, 477, 559
Bme18I	GGWCC	4 cut(s)	10, 403, 555, 599
BmgT120I	GGNCC	4 cut(s)	10, 403, 555, 599
BmiI	GGNNCC	3 cut(s)	38, 156, 601
BmrFI	CCNGG	3 cut(s)	426, 477, 559
BmsI	GCATC	1 cut(s)	584
Bpu14I	TTCGAA	2 cut(s)	230, 350
BpuMI	CCSGG	2 cut(s)	426, 559
BsaHI	GRCGYC	3 cut(s)	37, 369, 393
BsaJI	CCNNGG	2 cut(s)	13, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	13, 476
BseGI	GGATG	2 cut(s)	158, 214
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseRI	GAGGAG	8 cut(s)	82, 108, 183, 198, 201, 282, 300, 318
Bsh1236I	CGCG	3 cut(s)	30, 238, 416
BshNI	GGYRCC	2 cut(s)	36, 154
BsiHKAI	GWGCWC	1 cut(s)	630
BsiSI	CCGG	2 cut(s)	425, 558
BslFI	GGGAC	2 cut(s)	49, 585
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmFI	GGGAC	2 cut(s)	49, 585
Bsp119I	TTCGAA	2 cut(s)	230, 350
Bsp1286I	GDGCHC	1 cut(s)	630
BspACI	CCGC	4 cut(s)	28, 74, 236, 416
BspFNI	CGCG	3 cut(s)	30, 238, 416
BspLI	GGNNCC	3 cut(s)	38, 156, 601
BspT104I	TTCGAA	2 cut(s)	230, 350
BspT107I	GGYRCC	2 cut(s)	36, 154
BssECI	CCNNGG	2 cut(s)	13, 476
BssNI	GRCGYC	3 cut(s)	37, 369, 393
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	63, 389, 411
Bst6I	CTCTTC	4 cut(s)	180, 300, 318, 336
BstACI	GRCGYC	3 cut(s)	37, 369, 393
BstBI	TTCGAA	2 cut(s)	230, 350
BstC8I	GCNNGC	1 cut(s)	279
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	158, 214
BstFNI	CGCG	3 cut(s)	30, 238, 416
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	2 cut(s)	39, 416
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 43
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	3 cut(s)	424, 475, 557
BstSFI	CTRYAG	1 cut(s)	621
BstUI	CGCG	3 cut(s)	30, 238, 416
BtsCI	GGATG	2 cut(s)	158, 214
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	2 cut(s)	39, 416
Cfr13I	GGNCC	4 cut(s)	10, 403, 555, 599
CseI	GACGC	2 cut(s)	377, 401
CviJI	RGCY	9 cut(s)	19, 73, 110, 116, 133, 277, 281, 614, 628
CviKI_1	RGCY	9 cut(s)	19, 73, 110, 116, 133, 277, 281, 614, 628
DinI	GGCGCC	1 cut(s)	38
Eam1104I	CTCTTC	4 cut(s)	180, 300, 318, 336
EarI	CTCTTC	4 cut(s)	180, 300, 318, 336
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	630
Eco47I	GGWCC	4 cut(s)	10, 403, 555, 599
Eco53kI	GAGCTC	1 cut(s)	628
Eco57I	CTGAAG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	628
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	630
EgeI	GGCGCC	1 cut(s)	38
EheI	GGCGCC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	13
FaiI	YATR	7 cut(s)	25, 98, 445, 597, 608, 623, 652
FaqI	GGGAC	2 cut(s)	49, 585
Fnu4HI	GCNGC	2 cut(s)	28, 74
FokI	GGATG	2 cut(s)	145, 201
FriOI	GRGCYC	1 cut(s)	630
Fsp4HI	GCNGC	2 cut(s)	28, 74
FspBI	CTAG	2 cut(s)	536, 582
GlaI	GCGC	2 cut(s)	38, 415
GluI	GCNGC	2 cut(s)	28, 74
HaeII	RGCGCY	1 cut(s)	40
HapII	CCGG	2 cut(s)	425, 558
HgaI	GACGC	2 cut(s)	377, 401
HhaI	GCGC	2 cut(s)	39, 416
Hin1I	GRCGYC	3 cut(s)	37, 369, 393
Hin6I	GCGC	2 cut(s)	37, 414
HinP1I	GCGC	2 cut(s)	37, 414
HinfI	GANTC	8 cut(s)	82, 190, 232, 270, 352, 421, 541, 591
HpaII	CCGG	2 cut(s)	425, 558
HphI	GGTGA	4 cut(s)	51, 401, 430, 570
Hpy188III	TCNNGA	3 cut(s)	433, 536, 641
Hpy99I	CGWCG	4 cut(s)	82, 371, 389, 411
HpyAV	CCTTC	3 cut(s)	36, 146, 442
HpyCH4III	ACNGT	3 cut(s)	63, 389, 411
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 43
Hsp92I	GRCGYC	3 cut(s)	37, 369, 393
HspAI	GCGC	2 cut(s)	37, 414
KasI	GGCGCC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	5 cut(s)	291, 438, 462, 489, 571
LweI	GCATC	1 cut(s)	584
MaeI	CTAG	2 cut(s)	536, 582
MaeIII	GTNAC	3 cut(s)	389, 502, 520
MhlI	GDGCHC	1 cut(s)	630
MluCI	AATT	1 cut(s)	644
Mly113I	GGCGCC	1 cut(s)	37
MlyI	GAGTC	4 cut(s)	76, 184, 279, 430
MseI	TTAA	1 cut(s)	498
MspI	CCGG	2 cut(s)	425, 558
MspR9I	CCNGG	3 cut(s)	426, 477, 559
MvaI	CCWGG	1 cut(s)	477
MvnI	CGCG	3 cut(s)	30, 238, 416
MwoI	GCNNNNNNNGC	2 cut(s)	36, 43
NarI	GGCGCC	1 cut(s)	37
NciI	CCSGG	2 cut(s)	426, 559
NlaIV	GGNNCC	3 cut(s)	38, 156, 601
NmuCI	GTSAC	1 cut(s)	389
NspV	TTCGAA	2 cut(s)	230, 350
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	4 cut(s)	232, 352, 541, 591
PflFI	GACNNNGTC	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	29, 75
PleI	GAGTC	4 cut(s)	76, 184, 278, 429
PluTI	GGCGCC	1 cut(s)	40
PpsI	GAGTC	4 cut(s)	76, 184, 278, 429
Psp124BI	GAGCTC	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	3 cut(s)	38, 156, 601
PspPI	GGNCC	4 cut(s)	10, 403, 555, 599
PsyI	GACNNNGTC	1 cut(s)	8
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	28, 74
Sau96I	GGNCC	4 cut(s)	10, 403, 555, 599
SchI	GAGTC	4 cut(s)	76, 184, 279, 430
ScrFI	CCNGG	3 cut(s)	426, 477, 559
SduI	GDGCHC	1 cut(s)	630
SetI	ASST	8 cut(s)	12, 118, 252, 283, 492, 504, 583, 630
SfaNI	GCATC	1 cut(s)	584
SfcI	CTRYAG	1 cut(s)	621
SfoI	GGCGCC	1 cut(s)	38
SfuI	TTCGAA	2 cut(s)	230, 350
SinI	GGWCC	4 cut(s)	10, 403, 555, 599
Sse9I	AATT	1 cut(s)	644
SsiI	CCGC	4 cut(s)	28, 74, 236, 416
SspDI	GGCGCC	1 cut(s)	36
SspMI	CTAG	2 cut(s)	536, 582
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	3 cut(s)	424, 475, 557
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	3 cut(s)	63, 389, 411
TaqI	TCGA	8 cut(s)	230, 268, 273, 350, 366, 384, 432, 642
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	1 cut(s)	644
TauI	GCSGC	2 cut(s)	30, 76
TfiI	GAWTC	4 cut(s)	232, 352, 541, 591
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	2 cut(s)	323, 539
Tth111I	GACNNNGTC	1 cut(s)	8
VpaK11BI	GGWCC	4 cut(s)	10, 403, 555, 599
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	1 cut(s)	644
XbaI	TCTAGA	1 cut(s)	535
XspI	CTAG	2 cut(s)	536, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.