Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

8635347 .. 8643730

Gene Structure 8384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG094400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAATGCCAACTGGGTTGTGCAGAAAAATGGGACTCATCAATAGTCAAAAACCCATCTTCTTTAGCTATGTTGCTGTGCTTATTGTGCTTGTTTGCGTTGTACCCATCAATTCTCAAGCACAATCTGGGACTCTTGCACCTGATGAAGCAATTGGTTCAGAAGTATTTCCCAACAGAACAACTCGGTGAATTATTGGATGGTAGTTTTATTGCCGTTAAGCAACTTTCTTCAAAATCAAAGCAGGGAAATCGTGAATTCGTGAATGAAATAGGCATGATGTCTGCATTACAACACCCAAATCTTGTTAAACTGTATGGATGTTGCACGGAAGGAAATCAGTTATTCTTGGTCTACGAATACATGGAGAACAATAGCCTATCACATACTTTATTTGGTTCGGAGGAAGGCCTACGGAAATTGGACTGGCCTACAAGGCAGAAAATATGTCTGGACGAAGAGGAGCAAACCCATATTAGCACCAGAGTTGCTGGAACTATAGGATACATGGCGCCAGAGTATGCTTTATGGGGCTATTTAACCGATAAGGCAGATGTATACAGTTTTGGTGTTGTAGCATTGGAACTGGTATCTGGGAAAAACAACATCAAATATCGGCCAAATGAAAATTTTGTATGCCTTCTAGATTGGGCCCTTGTTTTACAACAAAAAGGAAATCTAATGGAGCTGGTGGATCCAAAGTTGGGTTCTGGGTTCAACGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

242

Amino Acids

27.33

Weight (kDa)

5.33

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	67 - 131	6.2e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	71 - 136	3.4e-14	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	153 - 214	2.5e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	158 - 204	7e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	511
AccI	GTMKAC	2 cut(s)	354, 558
AclWI	GGATC	2 cut(s)	689, 702
AcoI	YGGCCR	1 cut(s)	617
AcsI	RAATTY	2 cut(s)	257, 628
AcyI	GRCGYC	1 cut(s)	512
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	2 cut(s)	234, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	691, 723
AluBI	AGCT	2 cut(s)	68, 688
AluI	AGCT	2 cut(s)	68, 688
AlwI	GGATC	2 cut(s)	689, 702
AoxI	GGCC	4 cut(s)	409, 428, 617, 651
ApaI	GGGCCC	1 cut(s)	655
ApoI	RAATTY	2 cut(s)	257, 628
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	2 cut(s)	651, 652
AsuHPI	GGTGA	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	655
BamHI	GGATCC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	655
BccI	CCATC	3 cut(s)	64, 115, 194
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciVI	GTATCC	1 cut(s)	497
BfaI	CTAG	1 cut(s)	644
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	497
BglI	GCCNNNNNGGC	1 cut(s)	436
BmgT120I	GGNCC	2 cut(s)	651, 652
BmiI	GGNNCC	3 cut(s)	513, 653, 696
BmrI	ACTGGG	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse1I	ACTGG	3 cut(s)	18, 431, 591
BseGI	GGATG	2 cut(s)	205, 326
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseNI	ACTGG	3 cut(s)	18, 431, 591
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	655
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	4 cut(s)	411, 430, 619, 653
BshNI	GGYRCC	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	47, 144
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmFI	GGGAC	2 cut(s)	47, 144
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	4 cut(s)	411, 430, 619, 653
Bsp120I	GGGCCC	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	1 cut(s)	694
BspANI	GGCC	4 cut(s)	411, 430, 619, 653
BspLI	GGNNCC	3 cut(s)	513, 653, 696
BspPI	GGATC	2 cut(s)	689, 702
BspT107I	GGYRCC	1 cut(s)	511
BsrI	ACTGG	3 cut(s)	18, 431, 591
BssMI	GATC	1 cut(s)	694
BssNAI	GTATAC	1 cut(s)	559
BssNI	GRCGYC	1 cut(s)	512
Bst1107I	GTATAC	1 cut(s)	559
Bst4CI	ACNGT	2 cut(s)	315, 563
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	512
BstF5I	GGATG	2 cut(s)	205, 326
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	1 cut(s)	697
BstMBI	GATC	1 cut(s)	694
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 436
BstSFI	CTRYAG	1 cut(s)	498
BstSLI	GKGCMC	1 cut(s)	655
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BstZ17I	GTATAC	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	4 cut(s)	411, 430, 619, 653
BtsCI	GGATG	2 cut(s)	205, 326
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	651, 652
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	3 cut(s)	277, 364, 508
CviJI	RGCY	8 cut(s)	68, 378, 411, 430, 534, 619, 653, 688
CviKI_1	RGCY	8 cut(s)	68, 378, 411, 430, 534, 619, 653, 688
CviQI	GTAC	1 cut(s)	103
DinI	GGCGCC	1 cut(s)	513
DpnI	GATC	1 cut(s)	696
DpnII	GATC	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	617
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	655
EcoO109I	RGGNCCY	1 cut(s)	652
EcoRI	GAATTC	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	655
EgeI	GGCGCC	1 cut(s)	513
EheI	GGCGCC	1 cut(s)	513
FaeI	CATG	3 cut(s)	280, 367, 511
FaqI	GGGAC	2 cut(s)	47, 144
FatI	CATG	3 cut(s)	276, 363, 507
FblI	GTMKAC	2 cut(s)	354, 558
FokI	GGATG	2 cut(s)	212, 333
FriOI	GRGCYC	1 cut(s)	655
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	4 cut(s)	411, 430, 619, 653
HhaI	GCGC	1 cut(s)	514
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	3 cut(s)	280, 367, 511
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HinfI	GANTC	2 cut(s)	35, 132
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	355, 559
Hpy188I	TCNGA	2 cut(s)	162, 403
Hpy188III	TCNNGA	4 cut(s)	254, 262, 452, 644
Hpy8I	GTNNAC	2 cut(s)	355, 559
HpyAV	CCTTC	3 cut(s)	326, 401, 650
HpyCH4III	ACNGT	2 cut(s)	315, 563
HpyCH4V	TGCA	4 cut(s)	23, 139, 287, 327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 436
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	3 cut(s)	280, 367, 511
HspAI	GCGC	1 cut(s)	512
KasI	GGCGCC	1 cut(s)	511
Kzo9I	GATC	1 cut(s)	694
LmnI	GCTCC	2 cut(s)	463, 685
MaeI	CTAG	1 cut(s)	644
MalI	GATC	1 cut(s)	696
MboI	GATC	1 cut(s)	694
MboII	GAAGA	3 cut(s)	51, 222, 470
MfeI	CAATTG	1 cut(s)	152
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	655
MluCI	AATT	6 cut(s)	111, 152, 191, 257, 419, 628
Mly113I	GGCGCC	1 cut(s)	512
MlyI	GAGTC	2 cut(s)	29, 126
MnlI	CCTC	3 cut(s)	397, 454, 715
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	3 cut(s)	219, 309, 539
MunI	CAATTG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	87, 436
NarI	GGCGCC	1 cut(s)	512
NdeII	GATC	1 cut(s)	694
NlaIII	CATG	3 cut(s)	280, 367, 511
NlaIV	GGNNCC	3 cut(s)	513, 653, 696
PceI	AGGCCT	1 cut(s)	411
PctI	GAATGC	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	167
PleI	GAGTC	2 cut(s)	29, 126
PluTI	GGCGCC	1 cut(s)	515
PpsI	GAGTC	2 cut(s)	29, 126
PspN4I	GGNNCC	3 cut(s)	513, 653, 696
PspOMI	GGGCCC	1 cut(s)	651
PspPI	GGNCC	2 cut(s)	651, 652
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	219, 309, 539
Sau3AI	GATC	1 cut(s)	694
Sau96I	GGNCC	2 cut(s)	651, 652
SchI	GAGTC	2 cut(s)	29, 126
SduI	GDGCHC	1 cut(s)	655
SetI	ASST	3 cut(s)	70, 144, 690
SfcI	CTRYAG	1 cut(s)	498
SfoI	GGCGCC	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	6 cut(s)	111, 152, 191, 257, 419, 628
SseBI	AGGCCT	1 cut(s)	411
SspDI	GGCGCC	1 cut(s)	511
SspMI	CTAG	1 cut(s)	644
StuI	AGGCCT	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	315, 563
TasI	AATT	6 cut(s)	111, 152, 191, 257, 419, 628
Tru1I	TTAA	3 cut(s)	219, 309, 539
Tru9I	TTAA	3 cut(s)	219, 309, 539
TspDTI	ATGAA	3 cut(s)	161, 282, 639
TspGWI	ACGGA	2 cut(s)	344, 430
XapI	RAATTY	2 cut(s)	257, 628
XbaI	TCTAGA	1 cut(s)	643
XmiI	GTMKAC	2 cut(s)	354, 558
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.