Rw5G021390

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
28768697 .. 28775944
7248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021390.1

Sequence Viewer

Length: 3021 bp
ATGAAGATGGCAAGTAGAGATAAGATGATCATGATGCTCATGATATTGGTTTTCTGCTTCATATGCATAAACTCGGTCAAAGTTGAAGCACAGTCTGCAACTCTTATTGCTTCAGAAGTGGAAGCTCTGAAAGAAATAGCTACACAAATAGGAAAGAAGGATTGGAACTTTAGCGTCGACCCTTGCAGCAATGACACGAGCTGGGCCACCCCAATATCTGCTGCCAGGCCTCTGTTCAACAACACTGTCACCTGCAACTGCTCCTTCTCTGATGGTGCATGCCACGTCACCAACATCTTTCTTAAAGGGCAAGACCTTGCTGGTGTGCTTCCACCGTCTATTGCAAAGTTACCCTACCTGATAAATGTCGATTTCACAAGGAACTACCTAAATGGCAGCATACCGCGAGAATGGGCATCGACGAAGTTGCAATATCTGTCCATTACTGTGAACAACTTATCTGGACCAATCCCAAGCTACCTGGGAAACATTACCACTCTGACTTATCTGAGCATAGAGAATAACATGTTCTCAGGAACTGTTCCTCCTGAGCTTGGAAACTTGGTTAACTTGCAGAATCTTATTCTTAGTGCAAACAATCTCACAGGAGAATTGCCGGCGGCTCTTATGAATCTGACCAAGTTAACAGAACTGAGGATTAGCAGCAACAACTTCACTGGAAGAATGCCCGACTTTTTTCGAAGTTGGAATCAACTTCAGAAATTAGAGATCCAAGCTAGTGGCCTACAAGGTCCCATTCCATCTAGCATTTCTGTCTTGAGTAATTTAACAGAACTAAGGATCAGCGACTTAAATGGAGGGGGTTCAGTATTTCCAAACTTGAGCAATATGATAAGCTTGCAAAGATTAATGCTCAGGAGCTGTAACTTATCTGGACCTATTCCTTCTGATTTATCAGCAATGTCACAGTTGAAAACATTAGATCTAAGCTTCAACAGATTGGAGGGGAGCATTCCTGATTTGGCAGATCTGACACCCTTGCAGAACTTGTATCTAACAAGCAACTTGCTTACTGGATCTATTCCAGACTGGATCAAGAGCAGAGATAATCGCTACGAGATAGATGTTTCTTACAATAATTTTTCGGAGAGCTCTGAGTCACCTTCTTGTACAGAAAACCTGAACGTGTTCAAAAGCTTTTCTGCACATGATAACTCATTATATGCGGAGTGCCTGAAGAGCTCTCCATGTCCAAAAGATCAGTACTCATTGCATATCAATTGTGGTGGTAAAGCAACCACCATTGGAGGAATCAACTTTGAAGCGGATCAAGACCCAGGAGGTGCAGCACATTTTGTTCCTTCAGGGCCTAGCTGGGGATTCAGTAGCACTGGACATTTCTGGGATGTTAACACCACCTCTAATGACTACATAGCAACTAATATATCTATACTCGGGATGAACAACTCTGAGTTGTACACAGATGCACGCCTCTCTCCTCTTTCTCTCACGTATTATGGACGCTGCTTCGGCAGTGGAAATTATACTGTGAAGCTTTACTTTTCGGAGATTATAATCAGAGGCAATAGATCTTTTTCTAGTCTTGGAAGACGGATATTCGATGTTTATATTCAGGAGAAGTTAGTGTTGAAGGATTTCGACATTGAAAAGGATGCCCAAGGGGTTGATAAGCCAGTCATCTGGGAATTTAAAGCAGTTGAGGTTAAGAAGAAAACTTTAGAGATCCGATTTCATTGGTCTGGGAAAGGGACAACAGCTTCCCCAAACAGAGGAGTATATGGTCCCCTTATTTCAGCTCTCTCTATAGAATCAGAGTTCAAGCCTCCTCATGATAGCAAGACATGGGTATTTATTGTGGTGGGAGCTTCGGTTTTGTGCCTCATTCTGTTGATTTTAAGCATTCTTTGGTGGAGAGGCTGTCTGGATAAGAAGACATCAAGAGAAGAAGCTCTGAGAGGACTGGATCTGCAAACTGGCTTTTTCACGTTCAAGCAAATAAAAGCTGCCACTAATAACTTTGATCCTGTAAACAAAATTGGGGAAGGTGGTTTTGGATCTGTGTACAAGGGAATACTACTGGATGGTACTATAATTGCAGTAAAGCAATTATCTGCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAACGAAATAGGCATGATTTCTGGTTTACAGCATCCAAATGTCGTGAGATTGTATGGATGTTGTATTGAAGCAAATCAGTTACTTTTGGTATATGAATACATGGAGAACAATAGCCTTGCACATGCTTTGTTTGGTCCAGAGGGAGGTCTGGACTGGCCTACGAGGCAGAAAATATGCATAGGCATAGCAAAAGGTCTGGCATTTTTGCATGAGGAATCAGCACTGAAGGTTGTCCACAGAGATATTAAATCTACGAATGTATTACTGGACCAAGACCTTAACGCTAAGATCTCAGACTTTGGTCTGGCCAAGCTTGACGAAGAAGAGAATACCCACATTAGCACCAGAGTTGCTGGAACTATAGGATACATGGCGCCTGAATATGCACTATGGGGTTATTTAACATACAAAGCAGATGTATACAGTTTTGGTGTTGTCGCATTGGAAATTGTTGTTGGAAAGAACAACATGAAATTTCGAGCAGATGAGAACTTTGTAGGCCTTGTGGATTGGGCCCTTGTTTTACAACAAAAAGGGAATCTAATGGAGCTGGTGGATCCAAGGCTGGGGTCCGATTTCAGCAAGGAAGAGGCAATTAGAATGGTCAAAGTAGCTCTGCTATGCACCAATCCGGCACCAGCACTTAGGCCTACGATGTCATCAGTAGTGAGTATGCTTGAAGGGAGGAGTGCTGTTCCTGAATTGATTATGGATCCAAGTATCTATGGTGATGAGACGAGGTTGACAGCCTTGAGGGACCGGTTTGAGAAGTTTGCAGCAGAAGACAGCTCATCAAGTGGAACTCAGAGCCTCTTGCGTGGATCAGATGCAACATCGATTGGTTGTTCTGCTACTGCTACATCTTCAGATCTCCACAAAGTTAGTCCTACTTAG

Protein Analysis

1006

Amino Acids

110.58

Weight (kDa)

5.72

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 159 - 268 3e-12 Leucine-rich repeat region
Malectin PF11721 410 - 594 4.4e-35 Malectin domain
Pkinase PF00069 670 - 931 3.7e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 671 - 934 1.8e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1535
AarI CACCTGC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 260
AccB1I GGYRCC 2 cut(s) 2500, 2761
AccI GTMKAC 2 cut(s) 177, 2547
AccII CGCG 1 cut(s) 406
AciI CCGC 4 cut(s) 404, 620, 1187, 1286
AcoI YGGCCR 1 cut(s) 2433
AcsI RAATTY 3 cut(s) 1667, 2120, 2600
AcuI CTGAAG 6 cut(s) 96, 701, 1217, 1308, 2372, 2976
AcyI GRCGYC 1 cut(s) 2501
AfaI GTAC 5 cut(s) 1132, 1226, 1439, 2045, 2068
AfiI CCNNNNNNNGG 5 cut(s) 554, 1337, 1751, 2270, 2693
AflIII ACRYGT 2 cut(s) 525, 1146
AgeI ACCGGT 1 cut(s) 2886
AjiI CACGTC 1 cut(s) 286
AjnI CCWGG 3 cut(s) 224, 480, 1297
AjuI GAANNNNNNNTTGG 6 cut(s) 145, 177, 2016, 2048, 2565, 2597
AloI GAACNNNNNNTCC 2 cut(s) 529, 561
Alw21I GWGCWC 2 cut(s) 1115, 1205
Alw26I GTCTC 1 cut(s) 2855
AlwNI CAGNNNCTG 2 cut(s) 539, 882
Ama87I CYCGRG 1 cut(s) 1415
AoxI GGCC 9 cut(s) 204, 227, 742, 1328, 2282, 2433, 2626, 2640, 2774
ApaI GGGCCC 1 cut(s) 2644
ApeKI GCWGC 8 cut(s) 186, 221, 396, 663, 1307, 1485, 1985, 2903
ApoI RAATTY 3 cut(s) 1667, 2120, 2600
AseI ATTAAT 1 cut(s) 869
AsiGI ACCGGT 1 cut(s) 2886
Asp700I GAANNNNTTC 2 cut(s) 1148, 1616
AspLEI GCGC 1 cut(s) 2503
AsuHPI GGTGA 4 cut(s) 241, 280, 1113, 2867
AsuII TTCGAA 1 cut(s) 700
AvaI CYCGRG 1 cut(s) 1415
AvaII GGWCC 8 cut(s) 464, 752, 896, 1763, 2261, 2395, 2697, 2884
BaeGI GKGCMC 1 cut(s) 2644
BalI TGGCCA 1 cut(s) 2435
BamHI GGATCC 2 cut(s) 2683, 2839
BanI GGYRCC 2 cut(s) 2500, 2761
BanII GRGCYC 3 cut(s) 1115, 1205, 2644
BauI CACGAG 1 cut(s) 196
BbsI GAAGAC 3 cut(s) 1576, 1919, 2916
Bbv12I GWGCWC 2 cut(s) 1115, 1205
BbvI GCAGC 8 cut(s) 198, 208, 408, 675, 1319, 1472, 1972, 2915
BccI CCATC 3 cut(s) 266, 769, 2057
BcgI CGANNNNNNTGC 4 cut(s) 409, 443, 2096, 2130
BciT130I CCWGG 3 cut(s) 226, 482, 1299
BciVI GTATCC 1 cut(s) 2486
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 2855
BfaI CTAG 4 cut(s) 738, 765, 1332, 1560
BfmI CTRYAG 2 cut(s) 1785, 2487
BfoI RGCGCY 1 cut(s) 2504
BfuAI ACCTGC 1 cut(s) 260
BfuI GTATCC 1 cut(s) 2486
BglI GCCNNNNNGGC 1 cut(s) 2290
BglII AGATCT 5 cut(s) 943, 988, 1550, 2415, 2995
BisI GCNGC 9 cut(s) 187, 222, 397, 621, 664, 1308, 1486, 1986, 2904
BlsI GCNGC 9 cut(s) 188, 223, 398, 622, 665, 1309, 1487, 1987, 2905
BmcAI AGTACT 1 cut(s) 1226
Bme1390I CCNGG 3 cut(s) 226, 482, 1299
Bme18I GGWCC 8 cut(s) 464, 752, 896, 1763, 2261, 2395, 2697, 2884
BmeT110I CYCGRG 1 cut(s) 1415
BmgBI CACGTC 1 cut(s) 286
BmiI GGNNCC 9 cut(s) 754, 1765, 2502, 2642, 2685, 2698, 2763, 2841, 2885
BmrFI CCNGG 3 cut(s) 226, 482, 1299
BmsI GCATC 6 cut(s) 24, 425, 1435, 1624, 2167, 2944
BoxI GACNNNNGTC 1 cut(s) 2427
BpiI GAAGAC 3 cut(s) 1576, 1919, 2916
Bpu10I CCTNAGC 2 cut(s) 549, 875
Bpu14I TTCGAA 1 cut(s) 700
BpuEI CTTGAG 3 cut(s) 799, 862, 2899
Bsa29I ATCGAT 1 cut(s) 2963
BsaAI YACGTR 1 cut(s) 1473
BsaBI GATNNNNATC 1 cut(s) 1535
BsaHI GRCGYC 1 cut(s) 2501
BsaJI CCNNGG 4 cut(s) 481, 1297, 1639, 2687
BsaWI WCCGGW 1 cut(s) 2886
BsaXI ACNNNNNCTCC 6 cut(s) 529, 559, 1836, 1866, 1885, 1915
Bsc4I CCNNNNNNNGG 5 cut(s) 554, 1337, 1751, 2270, 2693
Bse118I RCCGGY 2 cut(s) 616, 2886
Bse3DI GCAATG 3 cut(s) 196, 927, 1229
Bse8I GATNNNNATC 1 cut(s) 1535
BseBI CCWGG 3 cut(s) 226, 482, 1299
BseCI ATCGAT 1 cut(s) 2963
BseDI CCNNGG 4 cut(s) 481, 1297, 1639, 2687
BseGI GGATG 6 cut(s) 1372, 1425, 1639, 2068, 2158, 2189
BseJI GATNNNNATC 1 cut(s) 1535
BseLI CCNNNNNNNGG 5 cut(s) 554, 1337, 1751, 2270, 2693
BseMI GCAATG 3 cut(s) 196, 927, 1229
BseRI GAGGAG 4 cut(s) 1449, 1767, 1797, 2827
BseSI GKGCMC 1 cut(s) 2644
BseXI GCAGC 8 cut(s) 198, 208, 408, 675, 1319, 1472, 1972, 2915
BseYI CCCAGC 3 cut(s) 201, 1335, 2692
BsgI GTGCAG 2 cut(s) 1149, 1326
Bsh1236I CGCG 1 cut(s) 406
BshFI GGCC 9 cut(s) 206, 229, 744, 1330, 2284, 2435, 2628, 2642, 2776
BshNI GGYRCC 2 cut(s) 2500, 2761
BshTI ACCGGT 1 cut(s) 2886
BshVI ATCGAT 1 cut(s) 2963
BsiHKAI GWGCWC 2 cut(s) 1115, 1205
BsiHKCI CYCGRG 1 cut(s) 1415
BsiSI CCGG 3 cut(s) 617, 2759, 2887
BslFI GGGAC 4 cut(s) 738, 1744, 1749, 2897
BslI CCNNNNNNNGG 5 cut(s) 554, 1337, 1751, 2270, 2693
BsmAI GTCTC 1 cut(s) 2855
BsmBI CGTCTC 1 cut(s) 2855
BsmFI GGGAC 4 cut(s) 738, 1744, 1749, 2897
BsmI GAATGC 3 cut(s) 690, 972, 1881
BsnI GGCC 9 cut(s) 206, 229, 744, 1330, 2284, 2435, 2628, 2642, 2776
BsoBI CYCGRG 1 cut(s) 1415
Bsp119I TTCGAA 1 cut(s) 700
Bsp120I GGGCCC 1 cut(s) 2640
Bsp1286I GDGCHC 3 cut(s) 1115, 1205, 2644
Bsp1407I TGTACA 3 cut(s) 1130, 1437, 2043
BspACI CCGC 4 cut(s) 404, 620, 1187, 1286
BspANI GGCC 9 cut(s) 206, 229, 744, 1330, 2284, 2435, 2628, 2642, 2776
BspDI ATCGAT 1 cut(s) 2963
BspFNI CGCG 1 cut(s) 406
BspHI TCATGA 3 cut(s) 30, 39, 1810
BspLI GGNNCC 9 cut(s) 754, 1765, 2502, 2642, 2685, 2698, 2763, 2841, 2885
BspMI ACCTGC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 1193
BspT104I TTCGAA 1 cut(s) 700
BspT107I GGYRCC 2 cut(s) 2500, 2761
BsrDI GCAATG 3 cut(s) 196, 927, 1229
BsrFI RCCGGY 2 cut(s) 616, 2886
BsrGI TGTACA 3 cut(s) 1130, 1437, 2043
BssAI RCCGGY 2 cut(s) 616, 2886
BssECI CCNNGG 4 cut(s) 481, 1297, 1639, 2687
BssNAI GTATAC 1 cut(s) 2548
BssNI GRCGYC 1 cut(s) 2501
BssSI CACGAG 1 cut(s) 196
BssT1I CCWWGG 2 cut(s) 1639, 2687
Bst1107I GTATAC 1 cut(s) 2548
Bst2BI CACGAG 1 cut(s) 196
Bst2UI CCWGG 3 cut(s) 226, 482, 1299
Bst4CI ACNGT 8 cut(s) 93, 247, 336, 448, 541, 930, 1510, 2552
Bst6I CTCTTC 3 cut(s) 1193, 2445, 2709
BstACI GRCGYC 1 cut(s) 2501
BstAPI GCANNNNNTGC 1 cut(s) 95
BstAUI TGTACA 3 cut(s) 1130, 1437, 2043
BstBAI YACGTR 1 cut(s) 1473
BstBI TTCGAA 1 cut(s) 700
BstC8I GCNNGC 4 cut(s) 280, 618, 860, 1450
BstF5I GGATG 6 cut(s) 1372, 1425, 1639, 2068, 2158, 2189
BstFNI CGCG 1 cut(s) 406
BstH2I RGCGCY 1 cut(s) 2504
BstHHI GCGC 1 cut(s) 2503
BstMAI GTCTC 1 cut(s) 2855
BstMWI GCNNNNNNNGC 5 cut(s) 63, 95, 1200, 1491, 2290
BstNI CCWGG 3 cut(s) 226, 482, 1299
BstNSI RCATGY 3 cut(s) 282, 529, 2252
BstPAI GACNNNNGTC 1 cut(s) 2427
BstSCI CCNGG 3 cut(s) 224, 480, 1297
BstSFI CTRYAG 2 cut(s) 1785, 2487
BstSLI GKGCMC 1 cut(s) 2644
BstUI CGCG 1 cut(s) 406
BstV1I GCAGC 8 cut(s) 198, 208, 408, 675, 1319, 1472, 1972, 2915
BstV2I GAAGAC 3 cut(s) 1576, 1919, 2916
BstXI CCANNNNNNTGG 2 cut(s) 740, 1662
BstZ17I GTATAC 1 cut(s) 2548
Bsu15I ATCGAT 1 cut(s) 2963
BsuI GTATCC 1 cut(s) 2486
BsuRI GGCC 9 cut(s) 206, 229, 744, 1330, 2284, 2435, 2628, 2642, 2776
BsuTUI ATCGAT 1 cut(s) 2963
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 6 cut(s) 1372, 1425, 1639, 2068, 2158, 2189
BtsI GCAGTG 1 cut(s) 1501
BtsIMutI CAGTG 5 cut(s) 243, 675, 1350, 1501, 2348
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 4 cut(s) 280, 618, 860, 1450
CaiI CAGNNNCTG 2 cut(s) 539, 882
CciI TCATGA 3 cut(s) 30, 39, 1810
CfoI GCGC 1 cut(s) 2503
Cfr10I RCCGGY 2 cut(s) 616, 2886
ClaI ATCGAT 1 cut(s) 2963
CseI GACGC 2 cut(s) 163, 1491
Csp6I GTAC 5 cut(s) 1131, 1225, 1438, 2044, 2067
CspAI ACCGGT 1 cut(s) 2886
CspCI CAANNNNNGTGG 2 cut(s) 1228, 1263
CviQI GTAC 5 cut(s) 1131, 1225, 1438, 2044, 2067
DinI GGCGCC 1 cut(s) 2502
DraI TTTAAA 1 cut(s) 1672
EaeI YGGCCR 1 cut(s) 2433
Eam1104I CTCTTC 3 cut(s) 1193, 2445, 2709
EarI CTCTTC 3 cut(s) 1193, 2445, 2709
Ecl136II GAGCTC 2 cut(s) 1113, 1203
Eco130I CCWWGG 2 cut(s) 1639, 2687
Eco147I AGGCCT 3 cut(s) 229, 2628, 2776
Eco24I GRGCYC 3 cut(s) 1115, 1205, 2644
Eco47I GGWCC 8 cut(s) 464, 752, 896, 1763, 2261, 2395, 2697, 2884
Eco53kI GAGCTC 2 cut(s) 1113, 1203
Eco57I CTGAAG 6 cut(s) 96, 701, 1217, 1308, 2372, 2976
Eco88I CYCGRG 1 cut(s) 1415
EcoICRI GAGCTC 2 cut(s) 1113, 1203
EcoO109I RGGNCCY 3 cut(s) 752, 1328, 2641
EcoRII CCWGG 3 cut(s) 224, 480, 1297
EcoT14I CCWWGG 2 cut(s) 1639, 2687
EcoT22I ATGCAT 2 cut(s) 68, 2306
EcoT38I GRGCYC 3 cut(s) 1115, 1205, 2644
EgeI GGCGCC 1 cut(s) 2502
EheI GGCGCC 1 cut(s) 2502
ErhI CCWWGG 2 cut(s) 1639, 2687
Esp3I CGTCTC 1 cut(s) 2855
FalI AAGNNNNNCTT 2 cut(s) 1505, 1537
FaqI GGGAC 4 cut(s) 738, 1744, 1749, 2897
FauNDI CATATG 1 cut(s) 62
FbaI TGATCA 1 cut(s) 27
FblI GTMKAC 2 cut(s) 177, 2547
Fnu4HI GCNGC 9 cut(s) 187, 222, 397, 621, 664, 1308, 1486, 1986, 2904
FokI GGATG 6 cut(s) 1379, 1432, 1646, 2075, 2145, 2196
FriOI GRGCYC 3 cut(s) 1115, 1205, 2644
Fsp4HI GCNGC 9 cut(s) 187, 222, 397, 621, 664, 1308, 1486, 1986, 2904
FspBI CTAG 4 cut(s) 738, 765, 1332, 1560
GlaI GCGC 1 cut(s) 2502
GluI GCNGC 9 cut(s) 187, 222, 397, 621, 664, 1308, 1486, 1986, 2904
GsaI CCCAGC 3 cut(s) 205, 1339, 2696
HaeII RGCGCY 1 cut(s) 2504
HaeIII GGCC 9 cut(s) 206, 229, 744, 1330, 2284, 2435, 2628, 2642, 2776
HapII CCGG 3 cut(s) 617, 2759, 2887
HgaI GACGC 2 cut(s) 163, 1491
HhaI GCGC 1 cut(s) 2503
Hin1I GRCGYC 1 cut(s) 2501
Hin6I GCGC 1 cut(s) 2501
HinP1I GCGC 1 cut(s) 2501
HincII GTYRAC 5 cut(s) 178, 568, 645, 1372, 2871
HindII GTYRAC 5 cut(s) 178, 568, 645, 1372, 2871
HindIII AAGCTT 5 cut(s) 856, 949, 1156, 1514, 2438
HinfI GANTC 9 cut(s) 577, 631, 709, 1118, 1272, 1341, 1790, 2342, 2665
HpaI GTTAAC 3 cut(s) 568, 645, 1372
HpaII CCGG 3 cut(s) 617, 2759, 2887
HphI GGTGA 4 cut(s) 241, 280, 1113, 2867
Hpy99I CGWCG 2 cut(s) 179, 424
HpyAV CCTTC 9 cut(s) 151, 274, 915, 1134, 1332, 1606, 2018, 2347, 2801
HpyCH4III ACNGT 8 cut(s) 93, 247, 336, 448, 541, 930, 1510, 2552
HpyCH4IV ACGT 4 cut(s) 285, 1146, 1472, 1967
HpyF10VI GCNNNNNNNGC 5 cut(s) 63, 95, 1200, 1491, 2290
HpySE526I ACGT 4 cut(s) 285, 1146, 1472, 1967
Hsp92I GRCGYC 1 cut(s) 2501
HspAI GCGC 1 cut(s) 2501
KasI GGCGCC 1 cut(s) 2500
KroI GCCGGC 1 cut(s) 616
KroNI GCCGGC 1 cut(s) 618
Ksp22I TGATCA 1 cut(s) 27
KspAI GTTAAC 3 cut(s) 568, 645, 1372
LguI GCTCTTC 1 cut(s) 1193
LmnI GCTCC 5 cut(s) 266, 879, 969, 1844, 2674
Lsp1109I GCAGC 8 cut(s) 198, 208, 408, 675, 1319, 1472, 1972, 2915
LweI GCATC 6 cut(s) 24, 425, 1435, 1624, 2167, 2944
MaeI CTAG 4 cut(s) 738, 765, 1332, 1560
MaeII ACGT 4 cut(s) 285, 1146, 1472, 1967
MaeIII GTNAC 7 cut(s) 247, 286, 348, 884, 924, 1119, 2205
MfeI CAATTG 1 cut(s) 1240
MhlI GDGCHC 3 cut(s) 1115, 1205, 2644
MlsI TGGCCA 1 cut(s) 2435
MluNI TGGCCA 1 cut(s) 2435
Mly113I GGCGCC 1 cut(s) 2501
MlyI GAGTC 1 cut(s) 1127
MmeI TCCRAC 2 cut(s) 686, 2563
Mox20I TGGCCA 1 cut(s) 2435
Mph1103I ATGCAT 2 cut(s) 68, 2306
MroNI GCCGGC 1 cut(s) 616
MroXI GAANNNNTTC 2 cut(s) 1148, 1616
MscI TGGCCA 1 cut(s) 2435
MslI CAYNNNNRTG 2 cut(s) 446, 2163
Msp20I TGGCCA 1 cut(s) 2435
MspI CCGG 3 cut(s) 617, 2759, 2887
MspR9I CCNGG 3 cut(s) 226, 482, 1299
MunI CAATTG 1 cut(s) 1240
Mva1269I GAATGC 3 cut(s) 690, 972, 1881
MvaI CCWGG 3 cut(s) 226, 482, 1299
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 5 cut(s) 63, 95, 1200, 1491, 2290
NaeI GCCGGC 1 cut(s) 618
NarI GGCGCC 1 cut(s) 2501
NdeI CATATG 1 cut(s) 62
NgoMIV GCCGGC 1 cut(s) 616
NlaIV GGNNCC 9 cut(s) 754, 1765, 2502, 2642, 2685, 2698, 2763, 2841, 2885
NmuCI GTSAC 4 cut(s) 247, 286, 924, 1119
NsiI ATGCAT 2 cut(s) 68, 2306
NspI RCATGY 3 cut(s) 282, 529, 2252
NspV TTCGAA 1 cut(s) 700
PaeI GCATGC 1 cut(s) 282
PagI TCATGA 3 cut(s) 30, 39, 1810
PaqCI CACCTGC 1 cut(s) 260
PceI AGGCCT 3 cut(s) 229, 2628, 2776
PciI ACATGT 1 cut(s) 525
PciSI GCTCTTC 1 cut(s) 1193
PctI GAATGC 3 cut(s) 690, 972, 1881
PdiI GCCGGC 1 cut(s) 618
PdmI GAANNNNTTC 2 cut(s) 1148, 1616
PfeI GAWTC 8 cut(s) 577, 631, 709, 1272, 1341, 1790, 2342, 2665
PinAI ACCGGT 1 cut(s) 2886
PkrI GCNGC 9 cut(s) 188, 223, 398, 622, 665, 1309, 1487, 1987, 2905
PleI GAGTC 1 cut(s) 1126
PluTI GGCGCC 1 cut(s) 2504
PpsI GAGTC 1 cut(s) 1126
Ppu21I YACGTR 1 cut(s) 1473
PpuMI RGGWCCY 1 cut(s) 752
PscI ACATGT 1 cut(s) 525
PshAI GACNNNNGTC 1 cut(s) 2427
PshBI ATTAAT 1 cut(s) 869
PsiI TTATAA 1 cut(s) 1535
Psp124BI GAGCTC 2 cut(s) 1115, 1205
Psp5II RGGWCCY 1 cut(s) 752
Psp6I CCWGG 3 cut(s) 224, 480, 1297
PspFI CCCAGC 3 cut(s) 201, 1335, 2692
PspGI CCWGG 3 cut(s) 224, 480, 1297
PspN4I GGNNCC 9 cut(s) 754, 1765, 2502, 2642, 2685, 2698, 2763, 2841, 2885
PspOMI GGGCCC 1 cut(s) 2640
PspPPI RGGWCCY 1 cut(s) 752
PstNI CAGNNNCTG 2 cut(s) 539, 882
RsaI GTAC 5 cut(s) 1132, 1226, 1439, 2045, 2068
RsaNI GTAC 5 cut(s) 1131, 1225, 1438, 2044, 2067
RseI CAYNNNNRTG 2 cut(s) 446, 2163
SacI GAGCTC 2 cut(s) 1115, 1205
SalI GTCGAC 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 1193
SatI GCNGC 9 cut(s) 187, 222, 397, 621, 664, 1308, 1486, 1986, 2904
ScaI AGTACT 1 cut(s) 1226
SchI GAGTC 1 cut(s) 1127
ScrFI CCNGG 3 cut(s) 226, 482, 1299
SduI GDGCHC 3 cut(s) 1115, 1205, 2644
SfaNI GCATC 6 cut(s) 24, 425, 1435, 1624, 2167, 2944
SfcI CTRYAG 2 cut(s) 1785, 2487
SfoI GGCGCC 1 cut(s) 2502
SfuI TTCGAA 1 cut(s) 700
SinI GGWCC 8 cut(s) 464, 752, 896, 1763, 2261, 2395, 2697, 2884
SmiMI CAYNNNNRTG 2 cut(s) 446, 2163
SmlI CTYRAG 3 cut(s) 778, 841, 2878
SmoI CTYRAG 3 cut(s) 778, 841, 2878
SphI GCATGC 1 cut(s) 282
SseBI AGGCCT 3 cut(s) 229, 2628, 2776
SsiI CCGC 4 cut(s) 404, 620, 1187, 1286
SspDI GGCGCC 1 cut(s) 2500
SspMI CTAG 4 cut(s) 738, 765, 1332, 1560
SstI GAGCTC 2 cut(s) 1115, 1205
StuI AGGCCT 3 cut(s) 229, 2628, 2776
StyD4I CCNGG 3 cut(s) 224, 480, 1297
StyI CCWWGG 2 cut(s) 1639, 2687
TaaI ACNGT 8 cut(s) 93, 247, 336, 448, 541, 930, 1510, 2552
TaiI ACGT 4 cut(s) 288, 1149, 1475, 1970
TaqI TCGA 8 cut(s) 177, 369, 419, 700, 1581, 1620, 2605, 2963
TaqII GACCGA 1 cut(s) 64
TatI WGTACW 4 cut(s) 1130, 1224, 1437, 2043
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 8 cut(s) 577, 631, 709, 1272, 1341, 1790, 2342, 2665
TscAI CASTG 5 cut(s) 250, 682, 1357, 1501, 2355
TseFI GTSAC 4 cut(s) 247, 286, 924, 1119
TseI GCWGC 8 cut(s) 186, 221, 396, 663, 1307, 1485, 1985, 2903
Tsp45I GTSAC 4 cut(s) 247, 286, 924, 1119
TspDTI ATGAA 7 cut(s) 17, 49, 644, 1436, 1703, 2235, 2612
TspGWI ACGGA 1 cut(s) 1588
TspRI CASTG 5 cut(s) 250, 682, 1357, 1501, 2355
VpaK11BI GGWCC 8 cut(s) 464, 752, 896, 1763, 2261, 2395, 2697, 2884
VspI ATTAAT 1 cut(s) 869
XapI RAATTY 3 cut(s) 1667, 2120, 2600
XceI RCATGY 3 cut(s) 282, 529, 2252
XmiI GTMKAC 2 cut(s) 177, 2547
XmnI GAANNNNTTC 2 cut(s) 1148, 1616
XspI CTAG 4 cut(s) 738, 765, 1332, 1560
ZrmI AGTACT 1 cut(s) 1226
Zsp2I ATGCAT 2 cut(s) 68, 2306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.