Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

24294880 .. 24302523

Gene Structure 7644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTGGACTCGCAGCAGAAGGTCCGAAGTATGACAAAGAGAAACTTGTATGGAAGGATTTTGACATCGTAAAGGAAGCACCAGGGGTTGATAAGGTAGTCATTAAGGTAACAAAGACAGTTCAAGTTACAAACAAAACTCTAGAGATTCGGTTTCATTGGTCCGGGAAAGGCACAACAGCATCACCTAGTAGAGGAATCTATGGTCCCCTTATATCAGCCATTTCTATAGAGCTCTCGTTCCGAGGACCGGATCTGCAGATCGGTTTTTTCACCTTGAGGCAAATTAAAGCTGCCACTAATAACTTTGATCCTTTAAACAAAATAGGAGAAGGTGGTTTTGGTCCCGTATACAAGCCAACTTCCAACCAAAGAGGAGGTACGAAGATTACCCAAATAAGTGGCCTAAAAAAATATGGTGGCCGAGCTTATGTATTGTCTGCGCACTGCCAATCACCAATTGAAAACACCTCCGGCACGGACGGAACACGTAGCCACTCATCAACACAAATCCTTCCACCAGAGCTTTTGGAAGTTGCACGAGTTTACAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

185

Amino Acids

20.15

Weight (kDa)

9.74

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	14 - 75	6.6e-10	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	351
AclWI	GGATC	2 cut(s)	261, 305
AcoI	YGGCCR	1 cut(s)	421
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	2 cut(s)	194, 250
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	2 cut(s)	125, 464
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	4 cut(s)	235, 293, 428, 526
AluI	AGCT	4 cut(s)	235, 293, 428, 526
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	261, 305
AoxI	GGCC	2 cut(s)	403, 421
ApeKI	GCWGC	2 cut(s)	14, 293
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	5 cut(s)	23, 162, 206, 248, 344
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	177, 265, 447
AvaII	GGWCC	5 cut(s)	23, 162, 206, 248, 344
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	26, 280
BciT130I	CCWGG	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	166
BfaI	CTAG	2 cut(s)	143, 189
BfmI	CTRYAG	2 cut(s)	228, 257
BisI	GCNGC	2 cut(s)	15, 294
BlsI	GCNGC	2 cut(s)	16, 295
Bme1390I	CCNGG	2 cut(s)	84, 166
Bme18I	GGWCC	5 cut(s)	23, 162, 206, 248, 344
BmgT120I	GGNCC	5 cut(s)	23, 162, 206, 248, 344
BmiI	GGNNCC	2 cut(s)	208, 346
BmrFI	CCNGG	2 cut(s)	84, 166
BmsI	GCATC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	166
BsaAI	YACGTR	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	83, 244
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 250
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	83, 244
BseLI	CCNNNNNNNGG	2 cut(s)	194, 250
BseRI	GAGGAG	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	26, 280
BshFI	GGCC	2 cut(s)	405, 423
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	165, 251, 474
BslFI	GGGAC	2 cut(s)	192, 330
BslI	CCNNNNNNNGG	2 cut(s)	194, 250
BsmFI	GGGAC	2 cut(s)	192, 330
BsnI	GGCC	2 cut(s)	405, 423
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	253, 261, 310
BspANI	GGCC	2 cut(s)	405, 423
BspLI	GGNNCC	2 cut(s)	208, 346
BspMAI	CTGCAG	1 cut(s)	261
BspPI	GGATC	2 cut(s)	261, 305
BssECI	CCNNGG	2 cut(s)	83, 244
BssMI	GATC	3 cut(s)	253, 261, 310
BssNAI	GTATAC	1 cut(s)	352
BssSI	CACGAG	1 cut(s)	540
Bst1107I	GTATAC	1 cut(s)	352
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	121
BstBAI	YACGTR	1 cut(s)	491
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	3 cut(s)	256, 264, 313
BstMBI	GATC	3 cut(s)	253, 261, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	82, 164
BstSFI	CTRYAG	2 cut(s)	228, 257
BstV1I	GCAGC	2 cut(s)	26, 280
BstX2I	RGATCY	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	253
BstZ17I	GTATAC	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	405, 423
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	445
CfoI	GCGC	1 cut(s)	445
Cfr13I	GGNCC	5 cut(s)	23, 162, 206, 248, 344
Csp6I	GTAC	1 cut(s)	381
CviQI	GTAC	1 cut(s)	381
DpnI	GATC	3 cut(s)	255, 263, 312
DpnII	GATC	3 cut(s)	253, 261, 310
DraI	TTTAAA	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	421
Ecl136II	GAGCTC	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	5 cut(s)	23, 162, 206, 248, 344
Eco53kI	GAGCTC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	237
FaiI	YATR	8 cut(s)	33, 52, 204, 215, 230, 352, 417, 432
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	2 cut(s)	192, 330
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	15, 294
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	15, 294
FspBI	CTAG	2 cut(s)	143, 189
FspI	TGCGCA	1 cut(s)	444
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	2 cut(s)	15, 294
HaeIII	GGCC	2 cut(s)	405, 423
HapII	CCGG	3 cut(s)	165, 251, 474
HhaI	GCGC	1 cut(s)	445
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HinfI	GANTC	3 cut(s)	9, 148, 198
HpaII	CCGG	3 cut(s)	165, 251, 474
HphI	GGTGA	3 cut(s)	177, 265, 447
Hpy166II	GTNNAC	2 cut(s)	352, 547
Hpy188I	TCNGA	2 cut(s)	27, 245
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	2 cut(s)	352, 547
HpyAV	CCTTC	4 cut(s)	14, 49, 326, 524
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	2 cut(s)	259, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	490
HspAI	GCGC	1 cut(s)	443
Kzo9I	GATC	3 cut(s)	253, 261, 310
LpnPI	CCDG	6 cut(s)	69, 96, 178, 264, 487, 534
Lsp1109I	GCAGC	2 cut(s)	26, 280
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	143, 189
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	2 cut(s)	109, 127
MalI	GATC	3 cut(s)	255, 263, 312
MboI	GATC	3 cut(s)	253, 261, 310
MboII	GAAGA	1 cut(s)	397
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	285, 459
MlyI	GAGTC	1 cut(s)	3
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	6 cut(s)	188, 239, 273, 368, 371, 481
MseI	TTAA	3 cut(s)	105, 288, 317
MspI	CCGG	3 cut(s)	165, 251, 474
MspR9I	CCNGG	2 cut(s)	84, 166
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	3 cut(s)	253, 261, 310
NlaIV	GGNNCC	2 cut(s)	208, 346
NmeAIII	GCCGAG	1 cut(s)	449
NsbI	TGCGCA	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	148, 198
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	16, 295
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
Ppu21I	YACGTR	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	208, 346
PspPI	GGNCC	5 cut(s)	23, 162, 206, 248, 344
PstI	CTGCAG	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	105, 288, 317
SatI	GCNGC	2 cut(s)	15, 294
Sau3AI	GATC	3 cut(s)	253, 261, 310
Sau96I	GGNCC	5 cut(s)	23, 162, 206, 248, 344
SchI	GAGTC	1 cut(s)	3
ScrFI	CCNGG	2 cut(s)	84, 166
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	191
SfcI	CTRYAG	2 cut(s)	228, 257
SinI	GGWCC	5 cut(s)	23, 162, 206, 248, 344
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	2 cut(s)	285, 459
SspMI	CTAG	2 cut(s)	143, 189
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	82, 164
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	493
TasI	AATT	2 cut(s)	285, 459
TfiI	GAWTC	2 cut(s)	148, 198
Tru1I	TTAA	3 cut(s)	105, 288, 317
Tru9I	TTAA	3 cut(s)	105, 288, 317
TscAI	CASTG	1 cut(s)	452
TseI	GCWGC	2 cut(s)	14, 293
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	2 cut(s)	494, 498
TspRI	CASTG	1 cut(s)	452
VpaK11BI	GGWCC	5 cut(s)	23, 162, 206, 248, 344
XagI	CCTNNNNNAGG	1 cut(s)	192
XbaI	TCTAGA	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	2 cut(s)	143, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.