Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

65331914 .. 65338235

Gene Structure 6322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1992 bp

ATGATACCAGTTGGGCCACCCCACCGTCTGATGATAGGCCTCTATACGACAACACTCTCACCTGCAATTGCTCCAATGGTGTATGCCACGTCACCAAGATGGCAAGATCTTGCTGGTGTACTTCCACCATCTATTGCAAAGTTATCCTACCTGACAGCAGTTGATTTCACAAGAAACTTCCTCAGCGGTAACATGCCAAACGAATGGGGTTCTAGTTCTACAAATTTGGAATACCTGGTACACTGCAGGTCTGTTTCTGTGAACAACTTATCAGGCCCAATCCCTGCATTCTTGGGAAACATTACCTCTCTGAGATACACTGCTGCTTATGATGAAGAATATGTTTTCAGGAGCTTAGAGAATAACTTATTTGATGGAACTCTTCCTTATGCGCTTTGGAATTTGGGTAACTTGGAGACTCTCATTCTCAGTGCAAACAGTCTCTCAGGAGAGTTGCCGGTGGGTCTCTCTAAACTGACTAAACTAACAGAACTAGATCTCAGCTTCAATGGATTGTTAGGAGAAATCCCCGACTCTTTTGGAACTCTGCCCTCCTTGCAGTACTTGTATCTGACAAGTAATGCCCTCACTGGGTCTATTCCAGACTGGATCATGAGCAGAGATAGTCGCTTCCACATAGATATTTCTTACAACGATCTTTCAGAGACTGAAGCACATTATCAATACTCATTGCATATAAATTGTGGTGGGAAAAACACCACCATTGGAGAAATCAACTTTGAAGGTGATCAAGTCCCAGGAGGTGCATCAGAGTTCGTTGCTGCTGGAGCTAATTGGGGATTCAGTAGCACTGGACATTTTTGGGATACTGAATTCACCTCTCAAAACTACATTGAAAATAATGTATCTATACCTGGAATGTACAACTCTGAGTTGTACACAAATGCACGCATCTCACCTCTTTCTCTCACATACTACGTACGCTGTTTGGCAAATGGAAACTATAGTGTGGAGCTTCACTTTGCAGAGATAATAATCAGAGGCAACAGATCTTTTCAGAGTCTTGGAAGACGGAAATTTGATGTTTATATCCAGCAAATTAAAGTTGCTACTAACAATTTTGATCTGGTAAACAAAATTGGGGAAGGTGGTTTTGGGTCTGTCTACAAGGGGGTATTATTGGATGGTACAGTAGTTGCGGTTAAGCAACTATCTTCAAAATCGAAGCAGGGAAATCGTGAATTTGTGAACGAAATAGGCATGATATCTAGTTTGCAACATCCAAATCTTGTTAGATTGTATGGATCCTGTATTGAAGCAAATGAACTACTGTTGGTTTATGAATATATGGAAAACAATAGCCTTGCACAAGCTTTGTTTGCACTTAAGGTTGTACATAGGGACATCAAAACAACGAATGTGCTATTGGACCAAGACCTTAATGCTAAGATCTCGGATTTTGGTCTGGCCAAGCTTGATGAAGAAGAGAACACCCACATTAGCACCAGAGTTGCTGGAACTATAGGATACATGGCGCCAGAATATGCACTATGGGGTTATTTAACCTTCAAAGCAGATGTCTTCAGTTTTGGTGTTGTTGCATTAGAAATAGTTGCCGGAAAAAACAACATGAAATTTCGACCAAATGAGAATTTTGTAGGCCTTGTGGATTGGGCTCTTGTTTTACAACAAAAAGAGAGTTTAGTGGAACTGGTGGATCCAAGGTTAGGATTGGATTTCAGTAACGAAGAGGCGGATAGAATGGCCAAAGTAGCTTTGCTGTGCATCAATCCGGCAGCGGCACTTAGGCCTACCATGTCTGCAGTCGTGAGTATGCTTGAAGGGCGAACCCCTGTCGATGAAATGATTATGGATCCAAGTATATATAGTGAAGAAATGAGGTTAACAGCCCTAAGAAATCCGTTTGAGCAGATTGCAGAAGAGAGTGCAGGTGGAACAAAGAGCTTGATACATTCATCAGATGCATCATGGAATGGTTCTTCTGCTCCTACAACATCTTCAGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

663

Amino Acids

73.06

Weight (kDa)

4.87

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	161 - 220	1.1e-08	Leucine rich repeat
Malectin	PF11721	230 - 371	2.3e-24	Malectin domain
Pkinase	PF00069	362 - 446	6.5e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	363 - 446	1.2e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	446 - 537	2.2e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	449 - 600	2.3e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	70, 1901
Acc36I	ACCTGC	3 cut(s)	70, 237, 1901
AccB1I	GGYRCC	1 cut(s)	1495
AccI	GTMKAC	1 cut(s)	1125
AciI	CCGC	4 cut(s)	186, 1160, 1715, 1760
AclWI	GGATC	7 cut(s)	617, 1260, 1273, 1673, 1686, 1829, 1842
AcoI	YGGCCR	2 cut(s)	1428, 1725
AcsI	RAATTY	7 cut(s)	223, 400, 833, 1037, 1202, 1595, 1612
AcuI	CTGAAG	3 cut(s)	690, 1528, 1965
AcyI	GRCGYC	1 cut(s)	1496
AfaI	GTAC	8 cut(s)	120, 240, 563, 884, 899, 942, 1150, 1356
AfiI	CCNNNNNNNGG	2 cut(s)	591, 1688
AflII	CTTAAG	1 cut(s)	1346
AgsI	TTSAA	7 cut(s)	508, 743, 857, 1179, 1277, 1531, 1802
AjiI	CACGTC	1 cut(s)	90
AjnI	CCWGG	3 cut(s)	234, 757, 874
AjuI	GAANNNNNNNTTGG	4 cut(s)	1098, 1130, 1370, 1402
AluBI	AGCT	8 cut(s)	354, 504, 791, 976, 1334, 1435, 1736, 1926
AluI	AGCT	8 cut(s)	354, 504, 791, 976, 1334, 1435, 1736, 1926
Alw26I	GTCTC	4 cut(s)	410, 446, 470, 659
AlwI	GGATC	7 cut(s)	617, 1260, 1273, 1673, 1686, 1829, 1842
AlwNI	CAGNNNCTG	1 cut(s)	668
AoxI	GGCC	7 cut(s)	14, 37, 274, 1428, 1621, 1725, 1769
ApeKI	GCWGC	3 cut(s)	323, 782, 1757
ApoI	RAATTY	7 cut(s)	223, 400, 833, 1037, 1202, 1595, 1612
ArsI	GACNNNNNNTTYG	2 cut(s)	1524, 1556
AspLEI	GCGC	2 cut(s)	394, 1498
AspS9I	GGNCC	3 cut(s)	14, 275, 1390
AsuHPI	GGTGA	5 cut(s)	51, 84, 758, 829, 909
AvaII	GGWCC	1 cut(s)	1390
BaeI	ACNNNNGTAYC	2 cut(s)	1140, 1173
BalI	TGGCCA	2 cut(s)	1430, 1727
BamHI	GGATCC	3 cut(s)	1265, 1678, 1834
BanI	GGYRCC	1 cut(s)	1495
BanII	GRGCYC	1 cut(s)	1639
BbsI	GAAGAC	2 cut(s)	1036, 1534
BbvCI	CCTCAGC	1 cut(s)	182
BbvI	GCAGC	3 cut(s)	310, 769, 1769
BccI	CCATC	4 cut(s)	93, 136, 368, 1139
BcgI	CGANNNNNNTGC	2 cut(s)	1178, 1212
BciT130I	CCWGG	3 cut(s)	236, 759, 876
BciVI	GTATCC	2 cut(s)	820, 1481
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	4 cut(s)	410, 446, 470, 659
BfaI	CTAG	3 cut(s)	213, 494, 1230
BfmI	CTRYAG	4 cut(s)	244, 964, 1482, 1782
BfoI	RGCGCY	1 cut(s)	1499
BfrI	CTTAAG	1 cut(s)	1346
BfuAI	ACCTGC	3 cut(s)	70, 237, 1901
BfuI	GTATCC	2 cut(s)	820, 1481
BglII	AGATCT	5 cut(s)	106, 496, 1010, 1410, 1984
BisI	GCNGC	4 cut(s)	324, 783, 1758, 1761
BlsI	GCNGC	4 cut(s)	325, 784, 1759, 1762
BmcAI	AGTACT	1 cut(s)	563
Bme1390I	CCNGG	3 cut(s)	236, 759, 876
Bme18I	GGWCC	1 cut(s)	1390
BmgBI	CACGTC	1 cut(s)	90
BmgT120I	GGNCC	3 cut(s)	14, 275, 1390
BmiI	GGNNCC	4 cut(s)	1267, 1497, 1680, 1836
BmrFI	CCNGG	3 cut(s)	236, 759, 876
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	5 cut(s)	776, 921, 1755, 1933, 1955
BmuI	ACTGGG	1 cut(s)	600
BpiI	GAAGAC	2 cut(s)	1036, 1534
BpmI	CTGGAG	1 cut(s)	807
Bpu10I	CCTNAGC	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	940
BsaBI	GATNNNNATC	1 cut(s)	995
BsaHI	GRCGYC	1 cut(s)	1496
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	757, 1682
Bsc4I	CCNNNNNNNGG	2 cut(s)	591, 1688
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	5 cut(s)	8, 595, 611, 817, 1677
Bse3DI	GCAATG	1 cut(s)	689
Bse8I	GATNNNNATC	1 cut(s)	995
BseBI	CCWGG	3 cut(s)	236, 759, 876
BseDI	CCNNGG	2 cut(s)	757, 1682
BseGI	GGATG	2 cut(s)	1150, 1240
BseJI	GATNNNNATC	1 cut(s)	995
BseLI	CCNNNNNNNGG	2 cut(s)	591, 1688
BseMI	GCAATG	1 cut(s)	689
BseMII	CTCAG	6 cut(s)	196, 302, 442, 459, 514, 882
BseNI	ACTGG	5 cut(s)	8, 595, 611, 817, 1677
BseXI	GCAGC	3 cut(s)	310, 769, 1769
BsgI	GTGCAG	1 cut(s)	1929
BshFI	GGCC	7 cut(s)	16, 39, 276, 1430, 1623, 1727, 1771
BshNI	GGYRCC	1 cut(s)	1495
BsiSI	CCGG	3 cut(s)	458, 1578, 1754
BsiWI	CGTACG	1 cut(s)	940
BslFI	GGGAC	2 cut(s)	740, 1376
BslI	CCNNNNNNNGG	2 cut(s)	591, 1688
BsmAI	GTCTC	4 cut(s)	410, 446, 470, 659
BsmFI	GGGAC	2 cut(s)	740, 1376
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	7 cut(s)	16, 39, 276, 1430, 1623, 1727, 1771
Bso31I	GGTCTC	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	1639
Bsp1407I	TGTACA	3 cut(s)	882, 897, 1354
BspACI	CCGC	4 cut(s)	186, 1160, 1715, 1760
BspANI	GGCC	7 cut(s)	16, 39, 276, 1430, 1623, 1727, 1771
BspCNI	CTCAG	6 cut(s)	195, 303, 441, 458, 513, 883
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	4 cut(s)	1267, 1497, 1680, 1836
BspMAI	CTGCAG	2 cut(s)	248, 1786
BspMI	ACCTGC	3 cut(s)	70, 237, 1901
BspPI	GGATC	7 cut(s)	617, 1260, 1273, 1673, 1686, 1829, 1842
BspT107I	GGYRCC	1 cut(s)	1495
BspTI	CTTAAG	1 cut(s)	1346
BspTNI	GGTCTC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	689
BsrFI	RCCGGY	1 cut(s)	457
BsrGI	TGTACA	3 cut(s)	882, 897, 1354
BsrI	ACTGG	5 cut(s)	8, 595, 611, 817, 1677
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	757, 1682
BssNI	GRCGYC	1 cut(s)	1496
BssT1I	CCWWGG	1 cut(s)	1682
Bst2UI	CCWGG	3 cut(s)	236, 759, 876
Bst4CI	ACNGT	4 cut(s)	26, 440, 1153, 1293
Bst6I	CTCTTC	4 cut(s)	387, 1440, 1704, 1896
BstACI	GRCGYC	1 cut(s)	1496
BstAFI	CTTAAG	1 cut(s)	1346
BstAUI	TGTACA	3 cut(s)	882, 897, 1354
BstBAI	YACGTR	1 cut(s)	940
BstC8I	GCNNGC	1 cut(s)	910
BstF5I	GGATG	2 cut(s)	1150, 1240
BstH2I	RGCGCY	1 cut(s)	1499
BstHHI	GCGC	2 cut(s)	394, 1498
BstMAI	GTCTC	4 cut(s)	410, 446, 470, 659
BstMWI	GCNNNNNNNGC	5 cut(s)	556, 788, 1340, 1733, 1804
BstNI	CCWGG	3 cut(s)	236, 759, 876
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	3 cut(s)	234, 757, 874
BstSFI	CTRYAG	4 cut(s)	244, 964, 1482, 1782
BstSNI	TACGTA	1 cut(s)	940
BstV1I	GCAGC	3 cut(s)	310, 769, 1769
BstV2I	GAAGAC	2 cut(s)	1036, 1534
BstX2I	RGATCY	8 cut(s)	106, 496, 1010, 1265, 1410, 1678, 1834, 1984
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	8 cut(s)	106, 496, 1010, 1265, 1410, 1678, 1834, 1984
BsuI	GTATCC	2 cut(s)	820, 1481
BsuRI	GGCC	7 cut(s)	16, 39, 276, 1430, 1623, 1727, 1771
BtrI	CACGTC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	1150, 1240
BtsI	GCAGTG	2 cut(s)	241, 318
BtsIMutI	CAGTG	5 cut(s)	241, 318, 436, 588, 810
BveI	ACCTGC	3 cut(s)	70, 237, 1901
Cac8I	GCNNGC	1 cut(s)	910
CaiI	CAGNNNCTG	1 cut(s)	668
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	2 cut(s)	394, 1498
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	3 cut(s)	14, 275, 1390
CsiI	ACCWGGT	1 cut(s)	234
Csp6I	GTAC	8 cut(s)	119, 239, 562, 883, 898, 941, 1149, 1355
CviAII	CATG	7 cut(s)	193, 613, 1222, 1492, 1591, 1777, 1950
CviQI	GTAC	8 cut(s)	119, 239, 562, 883, 898, 941, 1149, 1355
DinI	GGCGCC	1 cut(s)	1497
EaeI	YGGCCR	2 cut(s)	1428, 1725
Eam1104I	CTCTTC	4 cut(s)	387, 1440, 1704, 1896
EarI	CTCTTC	4 cut(s)	387, 1440, 1704, 1896
EciI	GGCGGA	1 cut(s)	1730
Eco105I	TACGTA	1 cut(s)	940
Eco130I	CCWWGG	1 cut(s)	1682
Eco147I	AGGCCT	3 cut(s)	39, 1623, 1771
Eco24I	GRGCYC	1 cut(s)	1639
Eco31I	GGTCTC	1 cut(s)	470
Eco32I	GATATC	1 cut(s)	1227
Eco47I	GGWCC	1 cut(s)	1390
Eco57I	CTGAAG	3 cut(s)	690, 1528, 1965
EcoRI	GAATTC	1 cut(s)	833
EcoRII	CCWGG	3 cut(s)	234, 757, 874
EcoRV	GATATC	1 cut(s)	1227
EcoT14I	CCWWGG	1 cut(s)	1682
EcoT22I	ATGCAT	1 cut(s)	1948
EcoT38I	GRGCYC	1 cut(s)	1639
EgeI	GGCGCC	1 cut(s)	1497
EheI	GGCGCC	1 cut(s)	1497
ErhI	CCWWGG	1 cut(s)	1682
FaeI	CATG	7 cut(s)	196, 616, 1225, 1495, 1594, 1780, 1953
FaqI	GGGAC	2 cut(s)	740, 1376
FatI	CATG	7 cut(s)	192, 612, 1221, 1491, 1590, 1776, 1949
FbaI	TGATCA	1 cut(s)	748
FblI	GTMKAC	1 cut(s)	1125
Fnu4HI	GCNGC	4 cut(s)	324, 783, 1758, 1761
FokI	GGATG	2 cut(s)	1157, 1227
FriOI	GRGCYC	1 cut(s)	1639
Fsp4HI	GCNGC	4 cut(s)	324, 783, 1758, 1761
FspBI	CTAG	3 cut(s)	213, 494, 1230
GlaI	GCGC	2 cut(s)	393, 1497
GluI	GCNGC	4 cut(s)	324, 783, 1758, 1761
GsuI	CTGGAG	1 cut(s)	807
HaeII	RGCGCY	1 cut(s)	1499
HaeIII	GGCC	7 cut(s)	16, 39, 276, 1430, 1623, 1727, 1771
HapII	CCGG	3 cut(s)	458, 1578, 1754
HhaI	GCGC	2 cut(s)	394, 1498
Hin1I	GRCGYC	1 cut(s)	1496
Hin1II	CATG	7 cut(s)	196, 616, 1225, 1495, 1594, 1780, 1953
Hin6I	GCGC	2 cut(s)	392, 1496
HinP1I	GCGC	2 cut(s)	392, 1496
HincII	GTYRAC	1 cut(s)	1866
HindII	GTYRAC	1 cut(s)	1866
HindIII	AAGCTT	2 cut(s)	1332, 1433
HinfI	GANTC	4 cut(s)	418, 533, 801, 1021
HpaI	GTTAAC	1 cut(s)	1866
HpaII	CCGG	3 cut(s)	458, 1578, 1754
HphI	GGTGA	5 cut(s)	51, 84, 758, 829, 909
Hpy166II	GTNNAC	8 cut(s)	119, 241, 262, 900, 1093, 1126, 1210, 1866
Hpy188III	TCNNGA	6 cut(s)	349, 447, 602, 613, 1199, 1789
Hpy8I	GTNNAC	8 cut(s)	119, 241, 262, 900, 1093, 1126, 1210, 1866
HpyAV	CCTTC	4 cut(s)	737, 1100, 1537, 1796
HpyCH4III	ACNGT	4 cut(s)	26, 440, 1153, 1293
HpyCH4IV	ACGT	2 cut(s)	89, 939
HpyF10VI	GCNNNNNNNGC	5 cut(s)	556, 788, 1340, 1733, 1804
HpySE526I	ACGT	2 cut(s)	89, 939
Hsp92I	GRCGYC	1 cut(s)	1496
Hsp92II	CATG	7 cut(s)	196, 616, 1225, 1495, 1594, 1780, 1953
HspAI	GCGC	2 cut(s)	392, 1496
KasI	GGCGCC	1 cut(s)	1495
Ksp22I	TGATCA	1 cut(s)	748
KspAI	GTTAAC	1 cut(s)	1866
LmnI	GCTCC	5 cut(s)	76, 351, 788, 973, 1972
Lsp1109I	GCAGC	3 cut(s)	310, 769, 1769
LweI	GCATC	5 cut(s)	776, 921, 1755, 1933, 1955
MabI	ACCWGGT	1 cut(s)	234
MaeI	CTAG	3 cut(s)	213, 494, 1230
MaeII	ACGT	2 cut(s)	89, 939
MaeIII	GTNAC	4 cut(s)	90, 188, 407, 1703
MfeI	CAATTG	1 cut(s)	66
MflI	RGATCY	8 cut(s)	106, 496, 1010, 1265, 1410, 1678, 1834, 1984
MhlI	GDGCHC	1 cut(s)	1639
MlsI	TGGCCA	2 cut(s)	1430, 1727
MluNI	TGGCCA	2 cut(s)	1430, 1727
Mly113I	GGCGCC	1 cut(s)	1496
MlyI	GAGTC	3 cut(s)	412, 527, 1030
Mox20I	TGGCCA	2 cut(s)	1430, 1727
Mph1103I	ATGCAT	1 cut(s)	1948
MscI	TGGCCA	2 cut(s)	1430, 1727
MseI	TTAA	6 cut(s)	1062, 1164, 1347, 1401, 1523, 1865
MslI	CAYNNNNRTG	1 cut(s)	97
Msp20I	TGGCCA	2 cut(s)	1430, 1727
MspA1I	CMGCKG	2 cut(s)	186, 1760
MspCI	CTTAAG	1 cut(s)	1346
MspI	CCGG	3 cut(s)	458, 1578, 1754
MspR9I	CCNGG	3 cut(s)	236, 759, 876
MunI	CAATTG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	3 cut(s)	236, 759, 876
MwoI	GCNNNNNNNGC	5 cut(s)	556, 788, 1340, 1733, 1804
NarI	GGCGCC	1 cut(s)	1496
NlaIII	CATG	7 cut(s)	196, 616, 1225, 1495, 1594, 1780, 1953
NlaIV	GGNNCC	4 cut(s)	1267, 1497, 1680, 1836
NmuCI	GTSAC	1 cut(s)	90
NsiI	ATGCAT	1 cut(s)	1948
NspI	RCATGY	1 cut(s)	196
PagI	TCATGA	1 cut(s)	612
PaqCI	CACCTGC	2 cut(s)	70, 1901
PceI	AGGCCT	3 cut(s)	39, 1623, 1771
PctI	GAATGC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	801
Pfl23II	CGTACG	1 cut(s)	940
PkrI	GCNGC	4 cut(s)	325, 784, 1759, 1762
PleI	GAGTC	3 cut(s)	412, 527, 1029
PluTI	GGCGCC	1 cut(s)	1499
PpsI	GAGTC	3 cut(s)	412, 527, 1029
Ppu21I	YACGTR	1 cut(s)	940
Psp6I	CCWGG	3 cut(s)	234, 757, 874
PspGI	CCWGG	3 cut(s)	234, 757, 874
PspLI	CGTACG	1 cut(s)	940
PspN4I	GGNNCC	4 cut(s)	1267, 1497, 1680, 1836
PspPI	GGNCC	3 cut(s)	14, 275, 1390
PstI	CTGCAG	2 cut(s)	248, 1786
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	8 cut(s)	106, 496, 1010, 1265, 1410, 1678, 1834, 1984
RsaI	GTAC	8 cut(s)	120, 240, 563, 884, 899, 942, 1150, 1356
RsaNI	GTAC	8 cut(s)	119, 239, 562, 883, 898, 941, 1149, 1355
RseI	CAYNNNNRTG	1 cut(s)	97
SaqAI	TTAA	6 cut(s)	1062, 1164, 1347, 1401, 1523, 1865
SatI	GCNGC	4 cut(s)	324, 783, 1758, 1761
Sau96I	GGNCC	3 cut(s)	14, 275, 1390
ScaI	AGTACT	1 cut(s)	563
SchI	GAGTC	3 cut(s)	412, 527, 1030
ScrFI	CCNGG	3 cut(s)	236, 759, 876
SduI	GDGCHC	1 cut(s)	1639
SexAI	ACCWGGT	1 cut(s)	234
SfaNI	GCATC	5 cut(s)	776, 921, 1755, 1933, 1955
SfcI	CTRYAG	4 cut(s)	244, 964, 1482, 1782
SfoI	GGCGCC	1 cut(s)	1497
SinI	GGWCC	1 cut(s)	1390
SmiMI	CAYNNNNRTG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	1346
SmoI	CTYRAG	1 cut(s)	1346
SnaBI	TACGTA	1 cut(s)	940
SseBI	AGGCCT	3 cut(s)	39, 1623, 1771
SsiI	CCGC	4 cut(s)	186, 1160, 1715, 1760
SspDI	GGCGCC	1 cut(s)	1495
SspMI	CTAG	3 cut(s)	213, 494, 1230
StuI	AGGCCT	3 cut(s)	39, 1623, 1771
StyD4I	CCNGG	3 cut(s)	234, 757, 874
StyI	CCWWGG	1 cut(s)	1682
TaaI	ACNGT	4 cut(s)	26, 440, 1153, 1293
TaiI	ACGT	2 cut(s)	92, 942
TaqI	TCGA	3 cut(s)	1184, 1600, 1818
TatI	WGTACW	5 cut(s)	118, 561, 882, 897, 1354
TauI	GCSGC	1 cut(s)	1763
TfiI	GAWTC	1 cut(s)	801
Tru1I	TTAA	6 cut(s)	1062, 1164, 1347, 1401, 1523, 1865
Tru9I	TTAA	6 cut(s)	1062, 1164, 1347, 1401, 1523, 1865
TscAI	CASTG	5 cut(s)	248, 325, 436, 595, 817
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	3 cut(s)	323, 782, 1757
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	7 cut(s)	348, 1299, 1317, 1455, 1607, 1836, 1926
TspGWI	ACGGA	2 cut(s)	1048, 1872
TspRI	CASTG	5 cut(s)	248, 325, 436, 595, 817
Vha464I	CTTAAG	1 cut(s)	1346
VpaK11BI	GGWCC	1 cut(s)	1390
XapI	RAATTY	7 cut(s)	223, 400, 833, 1037, 1202, 1595, 1612
XceI	RCATGY	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	1125
XspI	CTAG	3 cut(s)	213, 494, 1230
ZrmI	AGTACT	1 cut(s)	563
Zsp2I	ATGCAT	1 cut(s)	1948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.