Rh5CG103800

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
8388817 .. 8394296
5480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG103800.1

Sequence Viewer

Length: 216 bp
ATGAGGATGTCAGCCTTGAGACAACAGTTTGATCAAATTGTAAATGACAGCTCAATTCGATCTCAAACGAGCTACACTGATTCTCAGAGCCACCTTCGTTCATCAGATGTACCATGGACTGGTTCTTCGGCAGAAGCTGCTGCAGGTGCTGCATTTAACTTCACTACAAATACAGCATCAAATCTTAACATGCTCGAAGGATCTGAGAATAACTAA

Protein Analysis

71

Amino Acids

7.7

Weight (kDa)

4.65

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 119
AclWI GGATC 1 cut(s) 208
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 119
AluBI AGCT 3 cut(s) 51, 72, 137
AluI AGCT 3 cut(s) 51, 72, 137
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 208
AlwNI CAGNNNCTG 2 cut(s) 137, 149
ApeKI GCWGC 3 cut(s) 137, 140, 149
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
BbvI GCAGC 3 cut(s) 124, 127, 136
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 13
BfmI CTRYAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 3 cut(s) 138, 141, 150
BlsI GCNGC 3 cut(s) 139, 142, 151
BmsI GCATC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 2 cut(s) 98, 195
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 3 cut(s) 124, 127, 136
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 13
Bsp143I GATC 3 cut(s) 31, 59, 200
Bsp19I CCATGG 1 cut(s) 113
BspCNI CTCAG 2 cut(s) 97, 196
BspMAI CTGCAG 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 1 cut(s) 208
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 3 cut(s) 31, 59, 200
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 27
BstAPI GCANNNNNTGC 2 cut(s) 137, 149
BstDEI CTNAG 2 cut(s) 84, 204
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 3 cut(s) 34, 62, 203
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 3 cut(s) 31, 59, 200
BstMWI GCNNNNNNNGC 3 cut(s) 137, 146, 149
BstNSI RCATGY 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 3 cut(s) 124, 127, 136
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 134
CaiI CAGNNNCTG 2 cut(s) 137, 149
Csp6I GTAC 1 cut(s) 110
CviAII CATG 2 cut(s) 114, 190
CviJI RGCY 5 cut(s) 14, 51, 72, 90, 137
CviKI_1 RGCY 5 cut(s) 14, 51, 72, 90, 137
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 2 cut(s) 84, 204
DpnI GATC 3 cut(s) 33, 61, 202
DpnII GATC 3 cut(s) 31, 59, 200
Eco130I CCWWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 2 cut(s) 117, 193
FaiI YATR 2 cut(s) 115, 191
FatI CATG 2 cut(s) 113, 189
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 138, 141, 150
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 3 cut(s) 138, 141, 150
FspEI CC 9 cut(s) 28, 100, 104, 105, 107, 113, 126, 129, 183
GluI GCNGC 3 cut(s) 138, 141, 150
Hin1II CATG 2 cut(s) 117, 193
HinfI GANTC 1 cut(s) 80
Hpy188I TCNGA 3 cut(s) 87, 106, 205
HpyAV CCTTC 2 cut(s) 104, 191
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 143, 152
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 146, 149
HpyF3I CTNAG 2 cut(s) 84, 204
Hsp92II CATG 2 cut(s) 117, 193
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 3 cut(s) 31, 59, 200
LpnPI CCDG 2 cut(s) 105, 129
Lsp1109I GCAGC 3 cut(s) 124, 127, 136
LweI GCATC 1 cut(s) 185
MalI GATC 3 cut(s) 33, 61, 202
MboI GATC 3 cut(s) 31, 59, 200
MboII GAAGA 1 cut(s) 117
MflI RGATCY 1 cut(s) 200
MluCI AATT 2 cut(s) 36, 54
MseI TTAA 2 cut(s) 156, 186
MwoI GCNNNNNNNGC 3 cut(s) 137, 146, 149
NcoI CCATGG 1 cut(s) 113
NdeII GATC 3 cut(s) 31, 59, 200
NlaIII CATG 2 cut(s) 117, 193
NspI RCATGY 1 cut(s) 193
PaqCI CACCTGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 3 cut(s) 139, 142, 151
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 2 cut(s) 137, 149
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 156, 186
SatI GCNGC 3 cut(s) 138, 141, 150
Sau3AI GATC 3 cut(s) 31, 59, 200
SetI ASST 5 cut(s) 53, 74, 96, 139, 148
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 141
SgeI CNNG 7 cut(s) 28, 81, 126, 132, 156, 202, 206
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 36, 54
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 58, 195
TasI AATT 2 cut(s) 36, 54
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 2 cut(s) 156, 186
Tru9I TTAA 2 cut(s) 156, 186
TscAI CASTG 1 cut(s) 82
TseI GCWGC 3 cut(s) 137, 140, 149
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 1 cut(s) 82
Van91I CCANNNNNTGG 1 cut(s) 119
XceI RCATGY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.