Rroxscaffold_1G00046140

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
65277826 .. 65285701
7876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046140.1

Sequence Viewer

Length: 3021 bp
ATGGCAAGTAGAGATAAGATGATCATGATGCTCATGATATTGGTTTTGTGCTTCATATGCATAGACTCAGTCGAAGTTGAAGCACAGTCTGCAACTCTTATTGCTTCAGAAGTGGAAGCTCTGAAAGAAATAGCTACACAAATAGGAAAGAAGGATTGGAACTTTAGCGTCGACCCTTGCAGCAATGACACAAGCTGGGCCACCCCAATATCTGCTGCCAGGCCTCTGTTCAACAACACTGTCACCTGCAACTGCTCCTTCTCCGATGGTGCATGCCACGTCACCAACATCTTTCTTAAAGGGCAAGACCTTGCTGGTGTGCTTCCACCGTCTATTGCAAAGTTACCCTACCTGATAAATGTCGATTTCACAAGGAACTACCTAAATGGCAGCATACCGCAAGAATGGGCATCGACAAAGTTGCAATATCTGTCCATTACAGTGAACAACTTATCTGGACCAATCCCAAGCTACCTGGGAAACATTGCCACTCTAACTTATCTGAGCATAGAGAATAACATGTTCTCAGGAACTGTTCCTCCTGAGCTTGGAAACTTGGTTAACTTGCAGAATCTTATTCTTAGTGCAAACAATCTCACAGGAGAATTGCCGGCGGCTCTTATGAATCTGACTAAGTTAACAGAACTGAGGATTAGCAGCAACAACTTCACTGGAAGAATGCCCGACTTTTTTCAAAGTTGGAATCAACTTCAGAAATTAGAGATCCAAGCTAGTGGTCTACAAGGCCCCATTCCATCTAGCATTTCTGTCTTGAGTAATTTAACAGAACTAAGGATCAGCGACTTAAATGGAGGGGGTTCAGTATTTCCAAACTTGAGCAATATGATAAGCTTGCAAAGATTAATGCTCAGGAGCTGTAACTTATCTGGACCTATTCCTTCTGATTTATCAGCAATGTCACAGTTGAAAACATTAGATCTAAGCTTCAACAGATTGGAGGGGAGCATTCCTGATTTGGCAGATCTGACACCCTTGCAGAACTTGTATCTAACAAGCAACTTGCTTACTGGATCTATTCCAGACTGGATCAAGAGCAGAGATAATCGCTACGAGATAGATGTTTCTTACAATAATTTTTCTGAGAGCTCTGAGTCACCTTCTTGTACAGAAAACCTGAACGTGTTCAAAAGCTTTTCTGCACATGATAACTCATTATATGCAGAGTGCCTGAAGAGCTCTCCATGTCCAAAAGATCAGTACTCATTGCATATCAATTGTGGTGGTAAAGCAACCACCATTGGAGGAATCAACTTTGAAGCGGATCAAGACCCAGGAGGTGCAGCACATTTTGTTCCTTCAGGGCCTAGCTGGGGATTCAGTAGCACTGGACATTTCTGGGATGTTAACACCACCTCTAAAGACTACATATCAACTAATATATCTATACTCGGGATGAACAACTCTGAGTTGTACACAGATGCACGCCTTTCTCCTCTTTCTCTCACGTATTATGGACGCTGCTTCGGCAGTGGAAATTATACTGTGAAGCTTTACTTTTCGGAGATTATAATCAGAGGCAATAGATCTTTTTCTAGTCTCGGAAGACGGATATTCGATGTTTATATTCAGGAGAAGCTAGTGTTGAAGGATTTCGACATTGAAAAGGATGCCCAAGGGGTTGATAAGCCAGACGTGAAGGAATTTAAAGCAGTTGAGGTTAAGAAGAAAACTTTAGAGATCCGATTTCATTGGTCTGGGAAAGGGACAACAGCTTCCCCTAAGAGAGGAGTATATGGTCCCCTTATTTCAGCTATCTCTATAGAATCAGAGTTCAAGCCTCCTCATGATAGCAAGACATGGGTATTTATTGTGGTGGGAGCTTCGGTTTTGTGCCTCATTCTGTTGATTTTAAGCATTCTTTGGTGGAGAGGCTGTCTGGATAAGAAGACATCAAGAGAAGAAGCTCTGAGAGGACTGGATCTGCAAACTGGCTTTTTCACCGTCAAGCAAATAAAAGCTGCCACTAATAACTTTGATCCTGTAAACAAAATTGGGGAAGGTGGTTTTGGATCTGTGTACAAGGGAATACTACTGGATGGTACTATAATTGCAGTAAAGCAATTATCTGCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAACGAAATAGGCATGATTTCTGGTTTACAGCATCCAAATGTCGTGAGATTGTATGGATGTTGTATTGAAGCAAATCAGTTACTTTTGGTATATGAATACATGGAGAACAATAGCCTTGCACATGCTTTGTTTGGTCCAGAGGGAGGTCTGGACTGGCCTACGAGGCAGAAAATATGCATAGGCATAGCAAAAGGTCTGGCATTTTTGCATGAGGAATCAGCACTGAAGGTTGTCCACAGAGATATTAAATCTACGAATGTATTACTGGACCAAGACCTTAACGCTAAGATCTCAGACTTTGGTCTGGCCAAGCTTGACGAAGAAGACAATACCCACATTAGCACCAGAGTTGCTGGAACTATAGGATACATGGCGCCTGAATATGCACTATGGGGTTATTTAACATACAAAGCAGATGTATACAGTTTTGGTGTTGTCGCATTGGAAATTGTTGTTGGAAAGAACAACATGAAATTTCGAGCAGATGAGAACTTTGTAGGCCTTGTGGATTGGGCCCTTGTTTTACAACAAAAAGGGAATCTAATGGAGCTGGTGGATCCAAGGCTGGGGTCCGATTTCAGCAAGGAAGAGGCAATTAGAATGGTCAAAGTAGCTCTGCTATGCACCAATCCGGCGCCAGCACTTAGGCCTGCGATGTCTGCAGTAGTGAGTATGCTTGAAGGGAGGAGCGTTGTTCCTGAATTGATTATGGATCCAAGTATCTATGGTGATGAGACGAGGTTGACAGCCTTGAGGGACCGGTTTGAGAAGTTTGCAGCAGAAGACAGCTCATCAAGTGGAACTCAGAGCTTCTTGCGTGGATCAGATGCAACATCGATTGGTTGTTCTGCTACTGCTACATCTTCAGATCTCTACAAAGTTAGTCCTACTTCTTGGTAA

Protein Analysis

1006

Amino Acids

110.44

Weight (kDa)

5.45

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 157 - 266 3.2e-12 Leucine-rich repeat region
Malectin PF11721 408 - 592 9.1e-36 Malectin domain
Pkinase PF00069 668 - 867 1.3e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 669 - 931 2.7e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1529
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 254
AccB1I GGYRCC 2 cut(s) 2494, 2755
AccI GTMKAC 3 cut(s) 171, 739, 2541
AciI CCGC 3 cut(s) 398, 614, 1280
AcoI YGGCCR 1 cut(s) 2427
AcsI RAATTY 3 cut(s) 1661, 2114, 2594
AcuI CTGAAG 6 cut(s) 90, 695, 1211, 1302, 2366, 2970
AcyI GRCGYC 2 cut(s) 2495, 2756
AfaI GTAC 5 cut(s) 1126, 1220, 1433, 2039, 2062
AfiI CCNNNNNNNGG 5 cut(s) 548, 1331, 1745, 2264, 2687
AflIII ACRYGT 2 cut(s) 519, 1140
AgeI ACCGGT 1 cut(s) 2880
AjiI CACGTC 2 cut(s) 280, 1654
AjnI CCWGG 3 cut(s) 218, 474, 1291
AjuI GAANNNNNNNTTGG 6 cut(s) 139, 171, 2010, 2042, 2559, 2591
AloI GAACNNNNNNTCC 2 cut(s) 523, 555
Alw21I GWGCWC 2 cut(s) 1109, 1199
Alw26I GTCTC 2 cut(s) 1562, 2849
AlwNI CAGNNNCTG 2 cut(s) 533, 876
Ama87I CYCGRG 1 cut(s) 1409
AoxI GGCC 9 cut(s) 198, 221, 745, 1322, 2276, 2427, 2620, 2634, 2768
ApaI GGGCCC 1 cut(s) 2638
ApeKI GCWGC 8 cut(s) 180, 215, 390, 657, 1301, 1479, 1979, 2897
ApoI RAATTY 3 cut(s) 1661, 2114, 2594
AseI ATTAAT 1 cut(s) 863
AsiGI ACCGGT 1 cut(s) 2880
Asp700I GAANNNNTTC 2 cut(s) 1142, 1610
AspLEI GCGC 2 cut(s) 2497, 2758
AsuHPI GGTGA 5 cut(s) 235, 274, 1107, 1951, 2861
AvaI CYCGRG 1 cut(s) 1409
AvaII GGWCC 7 cut(s) 458, 890, 1757, 2255, 2389, 2691, 2878
BaeGI GKGCMC 1 cut(s) 2638
BalI TGGCCA 1 cut(s) 2429
BamHI GGATCC 2 cut(s) 2677, 2833
BanI GGYRCC 2 cut(s) 2494, 2755
BanII GRGCYC 3 cut(s) 1109, 1199, 2638
BbsI GAAGAC 4 cut(s) 1570, 1913, 2451, 2910
Bbv12I GWGCWC 2 cut(s) 1109, 1199
BbvI GCAGC 8 cut(s) 192, 202, 402, 669, 1313, 1466, 1966, 2909
BccI CCATC 3 cut(s) 260, 763, 2051
BcgI CGANNNNNNTGC 4 cut(s) 403, 437, 2090, 2124
BciT130I CCWGG 3 cut(s) 220, 476, 1293
BciVI GTATCC 1 cut(s) 2480
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 2 cut(s) 1562, 2849
BfaI CTAG 5 cut(s) 732, 759, 1326, 1554, 1598
BfmI CTRYAG 3 cut(s) 1779, 2481, 2781
BfoI RGCGCY 2 cut(s) 2498, 2759
BfuAI ACCTGC 1 cut(s) 254
BfuI GTATCC 1 cut(s) 2480
BglI GCCNNNNNGGC 1 cut(s) 2284
BglII AGATCT 5 cut(s) 937, 982, 1544, 2409, 2989
BisI GCNGC 9 cut(s) 181, 216, 391, 615, 658, 1302, 1480, 1980, 2898
BlsI GCNGC 9 cut(s) 182, 217, 392, 616, 659, 1303, 1481, 1981, 2899
BmcAI AGTACT 1 cut(s) 1220
Bme1390I CCNGG 3 cut(s) 220, 476, 1293
Bme18I GGWCC 7 cut(s) 458, 890, 1757, 2255, 2389, 2691, 2878
BmeT110I CYCGRG 1 cut(s) 1409
BmgBI CACGTC 2 cut(s) 280, 1654
BmiI GGNNCC 9 cut(s) 748, 1759, 2496, 2636, 2679, 2692, 2757, 2835, 2879
BmrFI CCNGG 3 cut(s) 220, 476, 1293
BmsI GCATC 6 cut(s) 18, 419, 1429, 1618, 2161, 2938
BoxI GACNNNNGTC 1 cut(s) 2421
BpiI GAAGAC 4 cut(s) 1570, 1913, 2451, 2910
Bpu10I CCTNAGC 2 cut(s) 543, 869
BpuEI CTTGAG 3 cut(s) 793, 856, 2893
Bsa29I ATCGAT 1 cut(s) 2957
BsaAI YACGTR 1 cut(s) 1467
BsaBI GATNNNNATC 1 cut(s) 1529
BsaHI GRCGYC 2 cut(s) 2495, 2756
BsaJI CCNNGG 4 cut(s) 475, 1291, 1633, 2681
BsaWI WCCGGW 1 cut(s) 2880
BsaXI ACNNNNNCTCC 6 cut(s) 523, 553, 1830, 1860, 1879, 1909
Bsc4I CCNNNNNNNGG 5 cut(s) 548, 1331, 1745, 2264, 2687
Bse118I RCCGGY 2 cut(s) 610, 2880
Bse1I ACTGG 9 cut(s) 676, 1033, 1049, 1351, 1941, 1954, 2058, 2279, 2391
Bse3DI GCAATG 4 cut(s) 190, 483, 921, 1223
Bse8I GATNNNNATC 1 cut(s) 1529
BseBI CCWGG 3 cut(s) 220, 476, 1293
BseCI ATCGAT 1 cut(s) 2957
BseDI CCNNGG 4 cut(s) 475, 1291, 1633, 2681
BseGI GGATG 6 cut(s) 1366, 1419, 1633, 2062, 2152, 2183
BseJI GATNNNNATC 1 cut(s) 1529
BseLI CCNNNNNNNGG 5 cut(s) 548, 1331, 1745, 2264, 2687
BseMI GCAATG 4 cut(s) 190, 483, 921, 1223
BseNI ACTGG 9 cut(s) 676, 1033, 1049, 1351, 1941, 1954, 2058, 2279, 2391
BseRI GAGGAG 4 cut(s) 1443, 1761, 1791, 2821
BseSI GKGCMC 1 cut(s) 2638
BseXI GCAGC 8 cut(s) 192, 202, 402, 669, 1313, 1466, 1966, 2909
BseYI CCCAGC 3 cut(s) 195, 1329, 2686
BsgI GTGCAG 2 cut(s) 1143, 1320
BshFI GGCC 9 cut(s) 200, 223, 747, 1324, 2278, 2429, 2622, 2636, 2770
BshNI GGYRCC 2 cut(s) 2494, 2755
BshTI ACCGGT 1 cut(s) 2880
BshVI ATCGAT 1 cut(s) 2957
BsiHKAI GWGCWC 2 cut(s) 1109, 1199
BsiHKCI CYCGRG 1 cut(s) 1409
BsiSI CCGG 3 cut(s) 611, 2753, 2881
BslFI GGGAC 3 cut(s) 1738, 1743, 2891
BslI CCNNNNNNNGG 5 cut(s) 548, 1331, 1745, 2264, 2687
BsmAI GTCTC 2 cut(s) 1562, 2849
BsmBI CGTCTC 1 cut(s) 2849
BsmFI GGGAC 3 cut(s) 1738, 1743, 2891
BsmI GAATGC 3 cut(s) 684, 966, 1875
BsnI GGCC 9 cut(s) 200, 223, 747, 1324, 2278, 2429, 2622, 2636, 2770
BsoBI CYCGRG 1 cut(s) 1409
Bsp120I GGGCCC 1 cut(s) 2634
Bsp1286I GDGCHC 3 cut(s) 1109, 1199, 2638
Bsp1407I TGTACA 3 cut(s) 1124, 1431, 2037
BspACI CCGC 3 cut(s) 398, 614, 1280
BspANI GGCC 9 cut(s) 200, 223, 747, 1324, 2278, 2429, 2622, 2636, 2770
BspDI ATCGAT 1 cut(s) 2957
BspHI TCATGA 3 cut(s) 24, 33, 1804
BspLI GGNNCC 9 cut(s) 748, 1759, 2496, 2636, 2679, 2692, 2757, 2835, 2879
BspMAI CTGCAG 1 cut(s) 2785
BspMI ACCTGC 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 1187
BspT107I GGYRCC 2 cut(s) 2494, 2755
BsrDI GCAATG 4 cut(s) 190, 483, 921, 1223
BsrFI RCCGGY 2 cut(s) 610, 2880
BsrGI TGTACA 3 cut(s) 1124, 1431, 2037
BsrI ACTGG 9 cut(s) 676, 1033, 1049, 1351, 1941, 1954, 2058, 2279, 2391
BssAI RCCGGY 2 cut(s) 610, 2880
BssECI CCNNGG 4 cut(s) 475, 1291, 1633, 2681
BssNAI GTATAC 1 cut(s) 2542
BssNI GRCGYC 2 cut(s) 2495, 2756
BssT1I CCWWGG 2 cut(s) 1633, 2681
Bst1107I GTATAC 1 cut(s) 2542
Bst2UI CCWGG 3 cut(s) 220, 476, 1293
Bst4CI ACNGT 9 cut(s) 87, 241, 330, 442, 535, 924, 1504, 1963, 2546
Bst6I CTCTTC 2 cut(s) 1187, 2703
BstACI GRCGYC 2 cut(s) 2495, 2756
BstAPI GCANNNNNTGC 1 cut(s) 89
BstAUI TGTACA 3 cut(s) 1124, 1431, 2037
BstBAI YACGTR 1 cut(s) 1467
BstC8I GCNNGC 6 cut(s) 274, 612, 854, 1444, 2760, 2772
BstENI CCTNNNNNAGG 1 cut(s) 1743
BstF5I GGATG 6 cut(s) 1366, 1419, 1633, 2062, 2152, 2183
BstH2I RGCGCY 2 cut(s) 2498, 2759
BstHHI GCGC 2 cut(s) 2497, 2758
BstMAI GTCTC 2 cut(s) 1562, 2849
BstMWI GCNNNNNNNGC 6 cut(s) 57, 89, 1194, 1485, 2284, 2780
BstNI CCWGG 3 cut(s) 220, 476, 1293
BstNSI RCATGY 3 cut(s) 276, 523, 2246
BstPAI GACNNNNGTC 1 cut(s) 2421
BstSCI CCNGG 3 cut(s) 218, 474, 1291
BstSFI CTRYAG 3 cut(s) 1779, 2481, 2781
BstSLI GKGCMC 1 cut(s) 2638
BstV1I GCAGC 8 cut(s) 192, 202, 402, 669, 1313, 1466, 1966, 2909
BstV2I GAAGAC 4 cut(s) 1570, 1913, 2451, 2910
BstXI CCANNNNNNTGG 1 cut(s) 734
BstZ17I GTATAC 1 cut(s) 2542
Bsu15I ATCGAT 1 cut(s) 2957
BsuI GTATCC 1 cut(s) 2480
BsuRI GGCC 9 cut(s) 200, 223, 747, 1324, 2278, 2429, 2622, 2636, 2770
BsuTUI ATCGAT 1 cut(s) 2957
BtgZI GCGATG 1 cut(s) 2789
BtrI CACGTC 2 cut(s) 280, 1654
BtsCI GGATG 6 cut(s) 1366, 1419, 1633, 2062, 2152, 2183
BtsI GCAGTG 1 cut(s) 1495
BtsIMutI CAGTG 6 cut(s) 237, 447, 669, 1344, 1495, 2342
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 6 cut(s) 274, 612, 854, 1444, 2760, 2772
CaiI CAGNNNCTG 2 cut(s) 533, 876
CciI TCATGA 3 cut(s) 24, 33, 1804
CfoI GCGC 2 cut(s) 2497, 2758
Cfr10I RCCGGY 2 cut(s) 610, 2880
ClaI ATCGAT 1 cut(s) 2957
CseI GACGC 2 cut(s) 157, 1485
Csp6I GTAC 5 cut(s) 1125, 1219, 1432, 2038, 2061
CspAI ACCGGT 1 cut(s) 2880
CspCI CAANNNNNGTGG 2 cut(s) 1222, 1257
CviQI GTAC 5 cut(s) 1125, 1219, 1432, 2038, 2061
DinI GGCGCC 2 cut(s) 2496, 2757
DraI TTTAAA 1 cut(s) 1666
EaeI YGGCCR 1 cut(s) 2427
Eam1104I CTCTTC 2 cut(s) 1187, 2703
EarI CTCTTC 2 cut(s) 1187, 2703
Ecl136II GAGCTC 2 cut(s) 1107, 1197
Eco130I CCWWGG 2 cut(s) 1633, 2681
Eco147I AGGCCT 3 cut(s) 223, 2622, 2770
Eco24I GRGCYC 3 cut(s) 1109, 1199, 2638
Eco47I GGWCC 7 cut(s) 458, 890, 1757, 2255, 2389, 2691, 2878
Eco53kI GAGCTC 2 cut(s) 1107, 1197
Eco57I CTGAAG 6 cut(s) 90, 695, 1211, 1302, 2366, 2970
Eco88I CYCGRG 1 cut(s) 1409
EcoICRI GAGCTC 2 cut(s) 1107, 1197
EcoNI CCTNNNNNAGG 1 cut(s) 1743
EcoO109I RGGNCCY 3 cut(s) 746, 1322, 2635
EcoRII CCWGG 3 cut(s) 218, 474, 1291
EcoT14I CCWWGG 2 cut(s) 1633, 2681
EcoT22I ATGCAT 2 cut(s) 62, 2300
EcoT38I GRGCYC 3 cut(s) 1109, 1199, 2638
EgeI GGCGCC 2 cut(s) 2496, 2757
EheI GGCGCC 2 cut(s) 2496, 2757
ErhI CCWWGG 2 cut(s) 1633, 2681
Esp3I CGTCTC 1 cut(s) 2849
FalI AAGNNNNNCTT 2 cut(s) 1499, 1531
FaqI GGGAC 3 cut(s) 1738, 1743, 2891
FauNDI CATATG 1 cut(s) 56
FbaI TGATCA 1 cut(s) 21
FblI GTMKAC 3 cut(s) 171, 739, 2541
Fnu4HI GCNGC 9 cut(s) 181, 216, 391, 615, 658, 1302, 1480, 1980, 2898
FokI GGATG 6 cut(s) 1373, 1426, 1640, 2069, 2139, 2190
FriOI GRGCYC 3 cut(s) 1109, 1199, 2638
Fsp4HI GCNGC 9 cut(s) 181, 216, 391, 615, 658, 1302, 1480, 1980, 2898
FspBI CTAG 5 cut(s) 732, 759, 1326, 1554, 1598
GlaI GCGC 2 cut(s) 2496, 2757
GluI GCNGC 9 cut(s) 181, 216, 391, 615, 658, 1302, 1480, 1980, 2898
GsaI CCCAGC 3 cut(s) 199, 1333, 2690
HaeII RGCGCY 2 cut(s) 2498, 2759
HaeIII GGCC 9 cut(s) 200, 223, 747, 1324, 2278, 2429, 2622, 2636, 2770
HapII CCGG 3 cut(s) 611, 2753, 2881
HgaI GACGC 2 cut(s) 157, 1485
HhaI GCGC 2 cut(s) 2497, 2758
Hin1I GRCGYC 2 cut(s) 2495, 2756
Hin6I GCGC 2 cut(s) 2495, 2756
HinP1I GCGC 2 cut(s) 2495, 2756
HincII GTYRAC 5 cut(s) 172, 562, 639, 1366, 2865
HindII GTYRAC 5 cut(s) 172, 562, 639, 1366, 2865
HindIII AAGCTT 5 cut(s) 850, 943, 1150, 1508, 2432
HpaI GTTAAC 3 cut(s) 562, 639, 1366
HpaII CCGG 3 cut(s) 611, 2753, 2881
HphI GGTGA 5 cut(s) 235, 274, 1107, 1951, 2861
Hpy99I CGWCG 1 cut(s) 173
HpyCH4III ACNGT 9 cut(s) 87, 241, 330, 442, 535, 924, 1504, 1963, 2546
HpyCH4IV ACGT 4 cut(s) 279, 1140, 1466, 1653
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 89, 1194, 1485, 2284, 2780
HpySE526I ACGT 4 cut(s) 279, 1140, 1466, 1653
Hsp92I GRCGYC 2 cut(s) 2495, 2756
HspAI GCGC 2 cut(s) 2495, 2756
KasI GGCGCC 2 cut(s) 2494, 2755
KroI GCCGGC 1 cut(s) 610
KroNI GCCGGC 1 cut(s) 612
Ksp22I TGATCA 1 cut(s) 21
KspAI GTTAAC 3 cut(s) 562, 639, 1366
LguI GCTCTTC 1 cut(s) 1187
LmnI GCTCC 6 cut(s) 260, 873, 963, 1838, 2668, 2808
Lsp1109I GCAGC 8 cut(s) 192, 202, 402, 669, 1313, 1466, 1966, 2909
LweI GCATC 6 cut(s) 18, 419, 1429, 1618, 2161, 2938
MaeI CTAG 5 cut(s) 732, 759, 1326, 1554, 1598
MaeII ACGT 4 cut(s) 279, 1140, 1466, 1653
MaeIII GTNAC 7 cut(s) 241, 280, 342, 878, 918, 1113, 2199
MfeI CAATTG 1 cut(s) 1234
MhlI GDGCHC 3 cut(s) 1109, 1199, 2638
MlsI TGGCCA 1 cut(s) 2429
MluNI TGGCCA 1 cut(s) 2429
Mly113I GGCGCC 2 cut(s) 2495, 2756
MlyI GAGTC 2 cut(s) 59, 1121
MmeI TCCRAC 2 cut(s) 680, 2557
Mox20I TGGCCA 1 cut(s) 2429
Mph1103I ATGCAT 2 cut(s) 62, 2300
MroNI GCCGGC 1 cut(s) 610
MroXI GAANNNNTTC 2 cut(s) 1142, 1610
MscI TGGCCA 1 cut(s) 2429
MslI CAYNNNNRTG 2 cut(s) 440, 2157
Msp20I TGGCCA 1 cut(s) 2429
MspI CCGG 3 cut(s) 611, 2753, 2881
MspR9I CCNGG 3 cut(s) 220, 476, 1293
MunI CAATTG 1 cut(s) 1234
Mva1269I GAATGC 3 cut(s) 684, 966, 1875
MvaI CCWGG 3 cut(s) 220, 476, 1293
MwoI GCNNNNNNNGC 6 cut(s) 57, 89, 1194, 1485, 2284, 2780
NaeI GCCGGC 1 cut(s) 612
NarI GGCGCC 2 cut(s) 2495, 2756
NdeI CATATG 1 cut(s) 56
NgoMIV GCCGGC 1 cut(s) 610
NlaIV GGNNCC 9 cut(s) 748, 1759, 2496, 2636, 2679, 2692, 2757, 2835, 2879
NmuCI GTSAC 4 cut(s) 241, 280, 918, 1113
NsiI ATGCAT 2 cut(s) 62, 2300
NspI RCATGY 3 cut(s) 276, 523, 2246
PaeI GCATGC 1 cut(s) 276
PagI TCATGA 3 cut(s) 24, 33, 1804
PaqCI CACCTGC 1 cut(s) 254
PceI AGGCCT 3 cut(s) 223, 2622, 2770
PciI ACATGT 1 cut(s) 519
PciSI GCTCTTC 1 cut(s) 1187
PctI GAATGC 3 cut(s) 684, 966, 1875
PdiI GCCGGC 1 cut(s) 612
PdmI GAANNNNTTC 2 cut(s) 1142, 1610
PfeI GAWTC 8 cut(s) 571, 625, 703, 1266, 1335, 1784, 2336, 2659
PflFI GACNNNGTC 1 cut(s) 68
PinAI ACCGGT 1 cut(s) 2880
PkrI GCNGC 9 cut(s) 182, 217, 392, 616, 659, 1303, 1481, 1981, 2899
PleI GAGTC 2 cut(s) 59, 1120
PluTI GGCGCC 2 cut(s) 2498, 2759
PpsI GAGTC 2 cut(s) 59, 1120
Ppu21I YACGTR 1 cut(s) 1467
PscI ACATGT 1 cut(s) 519
PshAI GACNNNNGTC 1 cut(s) 2421
PshBI ATTAAT 1 cut(s) 863
PsiI TTATAA 1 cut(s) 1529
Psp124BI GAGCTC 2 cut(s) 1109, 1199
Psp6I CCWGG 3 cut(s) 218, 474, 1291
PspFI CCCAGC 3 cut(s) 195, 1329, 2686
PspGI CCWGG 3 cut(s) 218, 474, 1291
PspN4I GGNNCC 9 cut(s) 748, 1759, 2496, 2636, 2679, 2692, 2757, 2835, 2879
PspOMI GGGCCC 1 cut(s) 2634
PstI CTGCAG 1 cut(s) 2785
PstNI CAGNNNCTG 2 cut(s) 533, 876
PsyI GACNNNGTC 1 cut(s) 68
RsaI GTAC 5 cut(s) 1126, 1220, 1433, 2039, 2062
RsaNI GTAC 5 cut(s) 1125, 1219, 1432, 2038, 2061
RseI CAYNNNNRTG 2 cut(s) 440, 2157
SacI GAGCTC 2 cut(s) 1109, 1199
SalI GTCGAC 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 1187
SatI GCNGC 9 cut(s) 181, 216, 391, 615, 658, 1302, 1480, 1980, 2898
ScaI AGTACT 1 cut(s) 1220
SchI GAGTC 2 cut(s) 59, 1121
ScrFI CCNGG 3 cut(s) 220, 476, 1293
SduI GDGCHC 3 cut(s) 1109, 1199, 2638
SfaNI GCATC 6 cut(s) 18, 419, 1429, 1618, 2161, 2938
SfcI CTRYAG 3 cut(s) 1779, 2481, 2781
SfoI GGCGCC 2 cut(s) 2496, 2757
SinI GGWCC 7 cut(s) 458, 890, 1757, 2255, 2389, 2691, 2878
SmiMI CAYNNNNRTG 2 cut(s) 440, 2157
SmlI CTYRAG 3 cut(s) 772, 835, 2872
SmoI CTYRAG 3 cut(s) 772, 835, 2872
SphI GCATGC 1 cut(s) 276
SseBI AGGCCT 3 cut(s) 223, 2622, 2770
SsiI CCGC 3 cut(s) 398, 614, 1280
SspDI GGCGCC 2 cut(s) 2494, 2755
SspMI CTAG 5 cut(s) 732, 759, 1326, 1554, 1598
SstI GAGCTC 2 cut(s) 1109, 1199
StuI AGGCCT 3 cut(s) 223, 2622, 2770
StyD4I CCNGG 3 cut(s) 218, 474, 1291
StyI CCWWGG 2 cut(s) 1633, 2681
TaaI ACNGT 9 cut(s) 87, 241, 330, 442, 535, 924, 1504, 1963, 2546
TaiI ACGT 4 cut(s) 282, 1143, 1469, 1656
TaqI TCGA 8 cut(s) 72, 171, 363, 413, 1575, 1614, 2599, 2957
TatI WGTACW 4 cut(s) 1124, 1218, 1431, 2037
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 8 cut(s) 571, 625, 703, 1266, 1335, 1784, 2336, 2659
TscAI CASTG 6 cut(s) 244, 447, 676, 1351, 1495, 2349
TseFI GTSAC 4 cut(s) 241, 280, 918, 1113
TseI GCWGC 8 cut(s) 180, 215, 390, 657, 1301, 1479, 1979, 2897
Tsp45I GTSAC 4 cut(s) 241, 280, 918, 1113
TspDTI ATGAA 6 cut(s) 43, 638, 1430, 1697, 2229, 2606
TspGWI ACGGA 1 cut(s) 1582
TspRI CASTG 6 cut(s) 244, 447, 676, 1351, 1495, 2349
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 7 cut(s) 458, 890, 1757, 2255, 2389, 2691, 2878
VspI ATTAAT 1 cut(s) 863
XagI CCTNNNNNAGG 1 cut(s) 1743
XapI RAATTY 3 cut(s) 1661, 2114, 2594
XceI RCATGY 3 cut(s) 276, 523, 2246
XmiI GTMKAC 3 cut(s) 171, 739, 2541
XmnI GAANNNNTTC 2 cut(s) 1142, 1610
XspI CTAG 5 cut(s) 732, 759, 1326, 1554, 1598
ZrmI AGTACT 1 cut(s) 1220
Zsp2I ATGCAT 2 cut(s) 62, 2300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.