Rh5AG235400

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
28525622 .. 28526189
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG235400.1

Sequence Viewer

Length: 432 bp
ATGAAATTTCGACCAAATGAGAATTTTGTAGGCCTTGTGGATTGGGCTCTTGTTTTACAACAAAAAGAGAGTTTAGTGGAACTGGTGGATCCAAGGTTAGGATTGGATTTCAGTAACGAAGAGGCGGTTAGAATGGCCAAAGTAGCTCTGCTGTGCATCAATCCAGCAGCGGCACTTAGGCCTACCATGTCTGCAGTCGTGAGTATGCTTGAAGGGCGAACCCCTGTCGATGAAATGATTATGGATCCAAGTATATATAGTGAAGAAATGAGGTTTACAGCCTTGAGAAATCCGTTTGAGCAGATTGCAGAAGAGAGTGCAGGTGGAACAAAGACCTTGATACATTCATCAGATGCATCATGGAATGGTTCTTCTGCTCCTACAACATCTTCAGATCTCTATAAAGTCAGTCCTAGTTGTGAGGAAAAGTAG

Protein Analysis

143

Amino Acids

15.74

Weight (kDa)

4.64

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 311
AciI CCGC 2 cut(s) 125, 170
AclWI GGATC 4 cut(s) 83, 96, 239, 252
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 2 cut(s) 5, 22
AcuI CTGAAG 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
AlwI GGATC 4 cut(s) 83, 96, 239, 252
AoxI GGCC 3 cut(s) 31, 135, 179
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 2 cut(s) 5, 22
BalI TGGCCA 1 cut(s) 137
BamHI GGATCC 2 cut(s) 88, 244
BanII GRGCYC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 179
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 311
BglII AGATCT 1 cut(s) 394
BisI GCNGC 2 cut(s) 168, 171
BlsI GCNGC 2 cut(s) 169, 172
BmiI GGNNCC 2 cut(s) 90, 246
BmsI GCATC 3 cut(s) 165, 343, 365
BpuEI CTTGAG 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 3 cut(s) 33, 137, 181
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 3 cut(s) 33, 137, 181
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 3 cut(s) 88, 244, 394
BspACI CCGC 2 cut(s) 125, 170
BspANI GGCC 3 cut(s) 33, 137, 181
BspLI GGNNCC 2 cut(s) 90, 246
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 4 cut(s) 83, 96, 239, 252
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 3 cut(s) 88, 244, 394
BssT1I CCWWGG 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 114, 306
BstDEI CTNAG 1 cut(s) 176
BstKTI GATC 3 cut(s) 91, 247, 397
BstMBI GATC 3 cut(s) 88, 244, 394
BstMWI GCNNNNNNNGC 2 cut(s) 143, 214
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 179
BstX2I RGATCY 3 cut(s) 88, 244, 394
BstYI RGATCY 3 cut(s) 88, 244, 394
BsuRI GGCC 3 cut(s) 33, 137, 181
BveI ACCTGC 1 cut(s) 311
CviAII CATG 2 cut(s) 187, 360
CviJI RGCY 6 cut(s) 33, 47, 137, 146, 181, 281
CviKI_1 RGCY 6 cut(s) 33, 47, 137, 146, 181, 281
DdeI CTNAG 1 cut(s) 176
DpnI GATC 3 cut(s) 90, 246, 396
DpnII GATC 3 cut(s) 88, 244, 394
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 114, 306
EarI CTCTTC 2 cut(s) 114, 306
Eco130I CCWWGG 1 cut(s) 92
Eco147I AGGCCT 2 cut(s) 33, 181
Eco24I GRGCYC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 2 cut(s) 190, 363
FaiI YATR 8 cut(s) 188, 206, 242, 254, 256, 258, 361, 402
FatI CATG 2 cut(s) 186, 359
Fnu4HI GCNGC 2 cut(s) 168, 171
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 168, 171
FspBI CTAG 1 cut(s) 414
GluI GCNGC 2 cut(s) 168, 171
HaeIII GGCC 3 cut(s) 33, 137, 181
Hin1II CATG 2 cut(s) 190, 363
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 352, 394
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 5 cut(s) 156, 194, 308, 320, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 214
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 190, 363
Kzo9I GATC 3 cut(s) 88, 244, 394
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 4 cut(s) 68, 177, 237, 306
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 3 cut(s) 165, 343, 365
MaeI CTAG 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 113
MalI GATC 3 cut(s) 90, 246, 396
MboI GATC 3 cut(s) 88, 244, 394
MboII GAAGA 5 cut(s) 131, 275, 323, 363, 381
MflI RGATCY 3 cut(s) 88, 244, 394
MhlI GDGCHC 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 2 cut(s) 5, 22
MluNI TGGCCA 1 cut(s) 137
MnlI CCTC 3 cut(s) 115, 264, 415
Mox20I TGGCCA 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 358
MscI TGGCCA 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 143, 214
NdeII GATC 3 cut(s) 88, 244, 394
NlaIII CATG 2 cut(s) 190, 363
NlaIV GGNNCC 2 cut(s) 90, 246
NsiI ATGCAT 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 311
PceI AGGCCT 2 cut(s) 33, 181
PkrI GCNGC 2 cut(s) 169, 172
PspN4I GGNNCC 2 cut(s) 90, 246
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 3 cut(s) 88, 244, 394
SatI GCNGC 2 cut(s) 168, 171
Sau3AI GATC 3 cut(s) 88, 244, 394
SduI GDGCHC 1 cut(s) 49
SetI ASST 5 cut(s) 98, 148, 275, 325, 338
SfaNI GCATC 3 cut(s) 165, 343, 365
SfcI CTRYAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 2 cut(s) 5, 22
SseBI AGGCCT 2 cut(s) 33, 181
SsiI CCGC 2 cut(s) 125, 170
SspMI CTAG 1 cut(s) 414
StuI AGGCCT 2 cut(s) 33, 181
StyI CCWWGG 1 cut(s) 92
TaqI TCGA 2 cut(s) 10, 228
TasI AATT 2 cut(s) 5, 22
TauI GCSGC 1 cut(s) 173
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 17, 246, 336
TspGWI ACGGA 1 cut(s) 282
XapI RAATTY 2 cut(s) 5, 22
XspI CTAG 1 cut(s) 414
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.